data_3SP3
#
_model_server_result.job_id            7LADeWbyoaiW33qG180eUA 
_model_server_result.datetime_utc      '2024-11-25 06:39:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":138}' 
#
_entry.id    3SP3 
#
_exptl.entry_id    3SP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SP3 
_cell.length_a            76.847 
_cell.length_b            76.847 
_cell.length_c            37.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    1 
_pdbx_entity_branch_link.entity_branch_list_num_2    2 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   FRU 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O2 
_pdbx_entity_branch_link.leaving_atom_id_2           HO2 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B GLC 1 B 1 GLC B 1 SUC 
2 n B FRU 2 B 2 FRU B 1 SUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 sing 
metalc ? metalc1 A O GLY 22 A GLY 22 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc2 A OD1 ASN 39 A ASN 39 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc3 A OE1 GLN 41 A GLN 41 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? 
metalc ? metalc4 A O GLY 49 A GLY 49 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc5 A OG1 THR 51 A THR 51 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc6 A OD2 ASP 66 A ASP 66 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc7 A OG1 THR 69 A THR 69 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? 
metalc ? metalc8 J NA NA . A NA 138 1_555 K O HOH . A HOH 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3SP3 
_atom_sites.fract_transf_matrix[1][1]    0.013013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026596 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 131 1 CL CL . 
D 3 CL A 1 132 2 CL CL . 
E 3 CL A 1 133 3 CL CL . 
F 3 CL A 1 134 4 CL CL . 
G 4 NA A 1 135 1 NA NA . 
H 4 NA A 1 136 2 NA NA . 
I 4 NA A 1 137 3 NA NA . 
J 4 NA A 1 138 4 NA NA . 
K 5 HOH A 1 139 1 HOH HOH . 
K 5 HOH A 2 140 2 HOH HOH . 
K 5 HOH A 3 141 3 HOH HOH . 
K 5 HOH A 4 142 4 HOH HOH . 
K 5 HOH A 5 143 5 HOH HOH . 
K 5 HOH A 6 144 6 HOH HOH . 
K 5 HOH A 7 145 7 HOH HOH . 
K 5 HOH A 8 146 8 HOH HOH . 
K 5 HOH A 9 147 9 HOH HOH . 
K 5 HOH A 10 148 10 HOH HOH . 
K 5 HOH A 11 149 11 HOH HOH . 
K 5 HOH A 12 150 12 HOH HOH . 
K 5 HOH A 13 151 13 HOH HOH . 
K 5 HOH A 14 152 14 HOH HOH . 
K 5 HOH A 15 153 15 HOH HOH . 
K 5 HOH A 16 154 16 HOH HOH . 
K 5 HOH A 17 155 17 HOH HOH . 
K 5 HOH A 18 156 18 HOH HOH . 
K 5 HOH A 19 157 19 HOH HOH . 
K 5 HOH A 20 158 20 HOH HOH . 
K 5 HOH A 21 159 21 HOH HOH . 
K 5 HOH A 22 160 22 HOH HOH . 
K 5 HOH A 23 161 23 HOH HOH . 
K 5 HOH A 24 162 24 HOH HOH . 
K 5 HOH A 25 163 25 HOH HOH . 
K 5 HOH A 26 164 26 HOH HOH . 
K 5 HOH A 27 165 27 HOH HOH . 
K 5 HOH A 28 166 28 HOH HOH . 
K 5 HOH A 29 167 29 HOH HOH . 
K 5 HOH A 30 168 30 HOH HOH . 
K 5 HOH A 31 169 31 HOH HOH . 
K 5 HOH A 32 170 32 HOH HOH . 
K 5 HOH A 33 171 33 HOH HOH . 
K 5 HOH A 34 172 34 HOH HOH . 
K 5 HOH A 35 173 35 HOH HOH . 
K 5 HOH A 36 174 36 HOH HOH . 
K 5 HOH A 37 175 37 HOH HOH . 
K 5 HOH A 38 176 38 HOH HOH . 
K 5 HOH A 39 177 39 HOH HOH . 
K 5 HOH A 40 178 40 HOH HOH . 
K 5 HOH A 41 179 41 HOH HOH . 
K 5 HOH A 42 180 42 HOH HOH . 
K 5 HOH A 43 181 43 HOH HOH . 
K 5 HOH A 44 182 44 HOH HOH . 
K 5 HOH A 45 183 45 HOH HOH . 
K 5 HOH A 46 184 46 HOH HOH . 
K 5 HOH A 47 185 47 HOH HOH . 
K 5 HOH A 48 186 48 HOH HOH . 
K 5 HOH A 49 187 49 HOH HOH . 
K 5 HOH A 50 188 50 HOH HOH . 
K 5 HOH A 51 189 51 HOH HOH . 
K 5 HOH A 52 190 52 HOH HOH . 
K 5 HOH A 53 191 53 HOH HOH . 
K 5 HOH A 54 192 54 HOH HOH . 
K 5 HOH A 55 193 55 HOH HOH . 
K 5 HOH A 56 194 56 HOH HOH . 
K 5 HOH A 57 195 57 HOH HOH . 
K 5 HOH A 58 196 58 HOH HOH . 
K 5 HOH A 59 197 59 HOH HOH . 
K 5 HOH A 60 198 60 HOH HOH . 
K 5 HOH A 61 199 61 HOH HOH . 
K 5 HOH A 62 200 62 HOH HOH . 
K 5 HOH A 63 201 63 HOH HOH . 
K 5 HOH A 64 202 64 HOH HOH . 
K 5 HOH A 65 203 65 HOH HOH . 
K 5 HOH A 66 204 66 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               16.514 
_atom_site.Cartn_y               -6.805 
_atom_site.Cartn_z               15.687 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           138 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#