data_3SP6
#
_model_server_result.job_id            7RPw1s662sv66KKBNGWTBw 
_model_server_result.datetime_utc      '2024-10-31 00:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sp6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    3SP6 
#
_exptl.entry_id    3SP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              360.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5E)-5-[(3aS,4R,5R,6aS)-5-hydroxy-4-[(1E,3S,4R)-3-hydroxy-4-methyloct-1-en-6-yn-1-yl]hexahydropentalen-2(1H)-ylidene]pentanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.99 
_cell.angle_gamma         90 
_cell.entry_id            3SP6 
_cell.length_a            44.837 
_cell.length_b            60.973 
_cell.length_c            54.16 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H32 O4' 
_chem_comp.formula_weight    360.487 
_chem_comp.id                IL2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5E)-5-[(3aS,4R,5R,6aS)-5-hydroxy-4-[(1E,3S,4R)-3-hydroxy-4-methyloct-1-en-6-yn-1-yl]hexahydropentalen-2(1H)-ylidene]pentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 IL2 sing 152 n n 
C3 C1 IL2 sing 153 n n 
C1 C6 IL2 sing 154 n n 
C1 H1 IL2 sing 155 n n 
O1 C5 IL2 sing 156 n n 
O1 HO1 IL2 sing 157 n n 
C4 C2 IL2 sing 158 n n 
C7 C2 IL2 sing 159 n n 
C2 H2 IL2 sing 160 n n 
O2 C13 IL2 sing 161 n n 
O2 HO2 IL2 sing 162 n n 
C5 C3 IL2 sing 163 n n 
C3 C9 IL2 sing 164 n n 
C3 H3 IL2 sing 165 n n 
O3 C19 IL2 sing 166 n n 
O3 HO3 IL2 sing 167 n n 
C4 C5 IL2 sing 168 n n 
C4 H4 IL2 sing 169 n n 
C4 H4A IL2 sing 170 n n 
O4 C19 IL2 doub 171 n n 
C5 H5 IL2 sing 172 n n 
C8 C6 IL2 sing 173 n n 
C6 H6 IL2 sing 174 n n 
C6 H6A IL2 sing 175 n n 
C7 C8 IL2 sing 176 n n 
C7 H7 IL2 sing 177 n n 
C7 H7A IL2 sing 178 n n 
C8 C10 IL2 doub 179 e n 
C9 C11 IL2 doub 180 e n 
C9 H9 IL2 sing 181 n n 
C12 C10 IL2 sing 182 n n 
C10 H10 IL2 sing 183 n n 
C11 C13 IL2 sing 184 n n 
C11 H11 IL2 sing 185 n n 
C12 C14 IL2 sing 186 n n 
C12 H12 IL2 sing 187 n n 
C12 H12A IL2 sing 188 n n 
C13 C15 IL2 sing 189 n n 
C13 H13 IL2 sing 190 n n 
C16 C14 IL2 sing 191 n n 
C14 H14 IL2 sing 192 n n 
C14 H14A IL2 sing 193 n n 
C15 C18 IL2 sing 194 n n 
C15 C17 IL2 sing 195 n n 
C15 H15 IL2 sing 196 n n 
C19 C16 IL2 sing 197 n n 
C16 H16 IL2 sing 198 n n 
C16 H16A IL2 sing 199 n n 
C17 C20 IL2 sing 200 n n 
C17 H17 IL2 sing 201 n n 
C17 H17A IL2 sing 202 n n 
C18 H18 IL2 sing 203 n n 
C18 H18A IL2 sing 204 n n 
C18 H18B IL2 sing 205 n n 
C20 C21 IL2 trip 206 n n 
C21 C22 IL2 sing 207 n n 
C22 H22 IL2 sing 208 n n 
C22 H22A IL2 sing 209 n n 
C22 H22B IL2 sing 210 n n 
#
_atom_sites.entry_id                     3SP6 
_atom_sites.fract_transf_matrix[1][1]    0.022303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007675 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 IL2 A 1 901 901 IL2 IL2 . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 10 10 HOH HOH . 
D 4 HOH A 11 11 11 HOH HOH . 
D 4 HOH A 12 12 12 HOH HOH . 
D 4 HOH A 13 13 13 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 17 17 HOH HOH . 
D 4 HOH A 16 18 18 HOH HOH . 
D 4 HOH A 17 19 19 HOH HOH . 
D 4 HOH A 18 20 20 HOH HOH . 
D 4 HOH A 19 21 21 HOH HOH . 
D 4 HOH A 20 22 22 HOH HOH . 
D 4 HOH A 21 23 23 HOH HOH . 
D 4 HOH A 22 24 24 HOH HOH . 
D 4 HOH A 23 25 25 HOH HOH . 
D 4 HOH A 24 26 26 HOH HOH . 
D 4 HOH A 25 27 27 HOH HOH . 
D 4 HOH A 26 28 28 HOH HOH . 
D 4 HOH A 27 30 30 HOH HOH . 
D 4 HOH A 28 31 31 HOH HOH . 
D 4 HOH A 29 32 32 HOH HOH . 
D 4 HOH A 30 33 33 HOH HOH . 
D 4 HOH A 31 34 34 HOH HOH . 
D 4 HOH A 32 35 35 HOH HOH . 
D 4 HOH A 33 36 36 HOH HOH . 
D 4 HOH A 34 37 37 HOH HOH . 
D 4 HOH A 35 38 38 HOH HOH . 
D 4 HOH A 36 40 40 HOH HOH . 
D 4 HOH A 37 41 41 HOH HOH . 
D 4 HOH A 38 42 42 HOH HOH . 
D 4 HOH A 39 43 43 HOH HOH . 
D 4 HOH A 40 44 44 HOH HOH . 
D 4 HOH A 41 45 45 HOH HOH . 
D 4 HOH A 42 46 46 HOH HOH . 
D 4 HOH A 43 47 47 HOH HOH . 
D 4 HOH A 44 48 48 HOH HOH . 
D 4 HOH A 45 49 49 HOH HOH . 
D 4 HOH A 46 50 50 HOH HOH . 
D 4 HOH A 47 51 51 HOH HOH . 
D 4 HOH A 48 52 52 HOH HOH . 
D 4 HOH A 49 53 53 HOH HOH . 
D 4 HOH A 50 54 54 HOH HOH . 
D 4 HOH A 51 55 55 HOH HOH . 
D 4 HOH A 52 56 56 HOH HOH . 
D 4 HOH A 53 57 57 HOH HOH . 
D 4 HOH A 54 59 59 HOH HOH . 
D 4 HOH A 55 60 60 HOH HOH . 
D 4 HOH A 56 61 61 HOH HOH . 
D 4 HOH A 57 62 62 HOH HOH . 
D 4 HOH A 58 63 63 HOH HOH . 
D 4 HOH A 59 64 64 HOH HOH . 
D 4 HOH A 60 65 65 HOH HOH . 
D 4 HOH A 61 66 66 HOH HOH . 
D 4 HOH A 62 67 67 HOH HOH . 
D 4 HOH A 63 69 69 HOH HOH . 
D 4 HOH A 64 71 71 HOH HOH . 
D 4 HOH A 65 72 72 HOH HOH . 
D 4 HOH A 66 73 73 HOH HOH . 
D 4 HOH A 67 75 75 HOH HOH . 
D 4 HOH A 68 76 76 HOH HOH . 
D 4 HOH A 69 77 77 HOH HOH . 
D 4 HOH A 70 79 79 HOH HOH . 
D 4 HOH A 71 82 82 HOH HOH . 
D 4 HOH A 72 83 83 HOH HOH . 
D 4 HOH A 73 84 84 HOH HOH . 
D 4 HOH A 74 85 85 HOH HOH . 
D 4 HOH A 75 86 86 HOH HOH . 
D 4 HOH A 76 87 87 HOH HOH . 
D 4 HOH A 77 88 88 HOH HOH . 
D 4 HOH A 78 89 89 HOH HOH . 
D 4 HOH A 79 90 90 HOH HOH . 
D 4 HOH A 80 91 91 HOH HOH . 
D 4 HOH A 81 92 92 HOH HOH . 
D 4 HOH A 82 93 93 HOH HOH . 
D 4 HOH A 83 94 94 HOH HOH . 
D 4 HOH A 84 95 95 HOH HOH . 
D 4 HOH A 85 96 96 HOH HOH . 
D 4 HOH A 86 97 97 HOH HOH . 
D 4 HOH A 87 98 98 HOH HOH . 
D 4 HOH A 88 99 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IL2 . . . C 3 3.158 -1.087 30.094 1 40.29 ? C1 IL2 901 A 1 
HETATM 2 O O1 IL2 . . . C 3 3.503 1.859 27.92 1 44.29 ? O1 IL2 901 A 1 
HETATM 3 C C2 IL2 . . . C 3 2.929 -1.604 28.683 1 45.57 ? C2 IL2 901 A 1 
HETATM 4 O O2 IL2 . . . C 3 4.869 3.515 32.743 1 53.71 ? O2 IL2 901 A 1 
HETATM 5 C C3 IL2 . . . C 3 3.319 0.411 29.944 1 35.78 ? C3 IL2 901 A 1 
HETATM 6 O O3 IL2 . . . C 3 -2.13 -1.252 26.395 1 41.57 ? O3 IL2 901 A 1 
HETATM 7 C C4 IL2 . . . C 3 3.439 -0.546 27.716 1 41.76 ? C4 IL2 901 A 1 
HETATM 8 O O4 IL2 . . . C 3 -0.688 0.395 26.076 1 37.61 ? O4 IL2 901 A 1 
HETATM 9 C C5 IL2 . . . C 3 3.922 0.632 28.553 1 42.52 ? C5 IL2 901 A 1 
HETATM 10 C C6 IL2 . . . C 3 1.952 -1.463 30.943 1 49.53 ? C6 IL2 901 A 1 
HETATM 11 C C7 IL2 . . . C 3 1.432 -1.84 28.496 1 46.07 ? C7 IL2 901 A 1 
HETATM 12 C C8 IL2 . . . C 3 0.894 -1.654 29.889 1 43.15 ? C8 IL2 901 A 1 
HETATM 13 C C9 IL2 . . . C 3 4.146 0.958 31.082 1 39.48 ? C9 IL2 901 A 1 
HETATM 14 C C10 IL2 . . . C 3 -0.416 -1.619 30.146 1 41.21 ? C10 IL2 901 A 1 
HETATM 15 C C11 IL2 . . . C 3 3.502 1.707 31.973 1 45.02 ? C11 IL2 901 A 1 
HETATM 16 C C12 IL2 . . . C 3 -1.361 -1.815 28.989 1 41.25 ? C12 IL2 901 A 1 
HETATM 17 C C13 IL2 . . . C 3 4.154 2.34 33.179 1 49.52 ? C13 IL2 901 A 1 
HETATM 18 C C14 IL2 . . . C 3 -2.388 -0.696 28.991 1 39.83 ? C14 IL2 901 A 1 
HETATM 19 C C15 IL2 . . . C 3 3.037 2.771 34.134 1 43.87 ? C15 IL2 901 A 1 
HETATM 20 C C16 IL2 . . . C 3 -1.918 0.427 28.089 1 33.01 ? C16 IL2 901 A 1 
HETATM 21 C C17 IL2 . . . C 3 3.062 2.076 35.486 1 42.95 ? C17 IL2 901 A 1 
HETATM 22 C C18 IL2 . . . C 3 3.065 4.283 34.327 1 47.76 ? C18 IL2 901 A 1 
HETATM 23 C C19 IL2 . . . C 3 -1.555 -0.189 26.761 1 39.31 ? C19 IL2 901 A 1 
HETATM 24 C C20 IL2 . . . C 3 2.62 3.058 36.504 1 47.68 ? C20 IL2 901 A 1 
HETATM 25 C C21 IL2 . . . C 3 2.301 3.834 37.336 1 43.03 ? C21 IL2 901 A 1 
HETATM 26 C C22 IL2 . . . C 3 1.935 4.774 38.414 1 39.45 ? C22 IL2 901 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           26 
#