data_3SPF
#
_model_server_result.job_id            cDB3cet2MzwEJKcxVx8DKQ 
_model_server_result.datetime_utc      '2024-11-04 20:35:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3spf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":210}' 
#
_entry.id    3SPF 
#
_exptl.entry_id    3SPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SPF 
_cell.length_a            103.748 
_cell.length_b            103.748 
_cell.length_c            35.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 206 n n 
C1 C2 GOL sing 207 n n 
C1 H11 GOL sing 208 n n 
C1 H12 GOL sing 209 n n 
O1 HO1 GOL sing 210 n n 
C2 O2 GOL sing 211 n n 
C2 C3 GOL sing 212 n n 
C2 H2 GOL sing 213 n n 
O2 HO2 GOL sing 214 n n 
C3 O3 GOL sing 215 n n 
C3 H31 GOL sing 216 n n 
C3 H32 GOL sing 217 n n 
O3 HO3 GOL sing 218 n n 
#
_atom_sites.entry_id                     3SPF 
_atom_sites.fract_transf_matrix[1][1]    0.009639 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 B50 A 1 501 501 B50 B50 . 
C 3 GOL A 1 209 2 GOL GOL . 
D 3 GOL A 1 210 3 GOL GOL . 
E 3 GOL A 1 211 6 GOL GOL . 
F 3 GOL A 1 212 7 GOL GOL . 
G 4 HOH A 1 26 26 HOH HOH . 
G 4 HOH A 2 27 27 HOH HOH . 
G 4 HOH A 3 28 28 HOH HOH . 
G 4 HOH A 4 29 29 HOH HOH . 
G 4 HOH A 5 30 30 HOH HOH . 
G 4 HOH A 6 31 31 HOH HOH . 
G 4 HOH A 7 32 32 HOH HOH . 
G 4 HOH A 8 33 33 HOH HOH . 
G 4 HOH A 9 34 34 HOH HOH . 
G 4 HOH A 10 35 35 HOH HOH . 
G 4 HOH A 11 36 36 HOH HOH . 
G 4 HOH A 12 37 37 HOH HOH . 
G 4 HOH A 13 38 38 HOH HOH . 
G 4 HOH A 14 39 39 HOH HOH . 
G 4 HOH A 15 40 40 HOH HOH . 
G 4 HOH A 16 41 41 HOH HOH . 
G 4 HOH A 17 42 42 HOH HOH . 
G 4 HOH A 18 43 43 HOH HOH . 
G 4 HOH A 19 44 44 HOH HOH . 
G 4 HOH A 20 45 45 HOH HOH . 
G 4 HOH A 21 46 46 HOH HOH . 
G 4 HOH A 22 47 47 HOH HOH . 
G 4 HOH A 23 48 48 HOH HOH . 
G 4 HOH A 24 49 49 HOH HOH . 
G 4 HOH A 25 50 50 HOH HOH . 
G 4 HOH A 26 51 51 HOH HOH . 
G 4 HOH A 27 52 52 HOH HOH . 
G 4 HOH A 28 53 53 HOH HOH . 
G 4 HOH A 29 54 54 HOH HOH . 
G 4 HOH A 30 55 55 HOH HOH . 
G 4 HOH A 31 56 56 HOH HOH . 
G 4 HOH A 32 57 57 HOH HOH . 
G 4 HOH A 33 58 58 HOH HOH . 
G 4 HOH A 34 59 59 HOH HOH . 
G 4 HOH A 35 60 60 HOH HOH . 
G 4 HOH A 36 61 61 HOH HOH . 
G 4 HOH A 37 62 62 HOH HOH . 
G 4 HOH A 38 65 65 HOH HOH . 
G 4 HOH A 39 213 1 HOH HOH . 
G 4 HOH A 40 214 2 HOH HOH . 
G 4 HOH A 41 215 3 HOH HOH . 
G 4 HOH A 42 216 4 HOH HOH . 
G 4 HOH A 43 217 5 HOH HOH . 
G 4 HOH A 44 218 6 HOH HOH . 
G 4 HOH A 45 219 7 HOH HOH . 
G 4 HOH A 46 220 8 HOH HOH . 
G 4 HOH A 47 221 9 HOH HOH . 
G 4 HOH A 48 222 10 HOH HOH . 
G 4 HOH A 49 223 11 HOH HOH . 
G 4 HOH A 50 224 12 HOH HOH . 
G 4 HOH A 51 225 13 HOH HOH . 
G 4 HOH A 52 226 14 HOH HOH . 
G 4 HOH A 53 227 15 HOH HOH . 
G 4 HOH A 54 228 16 HOH HOH . 
G 4 HOH A 55 229 17 HOH HOH . 
G 4 HOH A 56 230 18 HOH HOH . 
G 4 HOH A 57 231 19 HOH HOH . 
G 4 HOH A 58 232 20 HOH HOH . 
G 4 HOH A 59 233 21 HOH HOH . 
G 4 HOH A 60 234 22 HOH HOH . 
G 4 HOH A 61 235 23 HOH HOH . 
G 4 HOH A 62 236 24 HOH HOH . 
G 4 HOH A 63 237 25 HOH HOH . 
G 4 HOH A 64 238 66 HOH HOH . 
G 4 HOH A 65 239 67 HOH HOH . 
G 4 HOH A 66 240 68 HOH HOH . 
G 4 HOH A 67 241 71 HOH HOH . 
G 4 HOH A 68 242 72 HOH HOH . 
G 4 HOH A 69 243 73 HOH HOH . 
G 4 HOH A 70 244 74 HOH HOH . 
G 4 HOH A 71 245 75 HOH HOH . 
G 4 HOH A 72 246 79 HOH HOH . 
G 4 HOH A 73 247 80 HOH HOH . 
G 4 HOH A 74 248 81 HOH HOH . 
G 4 HOH A 75 249 82 HOH HOH . 
G 4 HOH A 76 250 85 HOH HOH . 
G 4 HOH A 77 251 86 HOH HOH . 
G 4 HOH A 78 252 87 HOH HOH . 
G 4 HOH A 79 253 89 HOH HOH . 
G 4 HOH A 80 254 90 HOH HOH . 
G 4 HOH A 81 255 91 HOH HOH . 
G 4 HOH A 82 256 94 HOH HOH . 
G 4 HOH A 83 257 95 HOH HOH . 
G 4 HOH A 84 258 96 HOH HOH . 
G 4 HOH A 85 259 101 HOH HOH . 
G 4 HOH A 86 260 103 HOH HOH . 
G 4 HOH A 87 261 104 HOH HOH . 
G 4 HOH A 88 262 106 HOH HOH . 
G 4 HOH A 89 263 112 HOH HOH . 
G 4 HOH A 90 264 114 HOH HOH . 
G 4 HOH A 91 265 116 HOH HOH . 
G 4 HOH A 92 266 117 HOH HOH . 
G 4 HOH A 93 267 119 HOH HOH . 
G 4 HOH A 94 268 124 HOH HOH . 
G 4 HOH A 95 269 125 HOH HOH . 
G 4 HOH A 96 270 126 HOH HOH . 
G 4 HOH A 97 271 127 HOH HOH . 
G 4 HOH A 98 272 128 HOH HOH . 
G 4 HOH A 99 273 140 HOH HOH . 
G 4 HOH A 100 274 141 HOH HOH . 
G 4 HOH A 101 275 142 HOH HOH . 
G 4 HOH A 102 276 145 HOH HOH . 
G 4 HOH A 103 277 146 HOH HOH . 
G 4 HOH A 104 278 147 HOH HOH . 
G 4 HOH A 105 279 148 HOH HOH . 
G 4 HOH A 106 280 149 HOH HOH . 
G 4 HOH A 107 281 151 HOH HOH . 
G 4 HOH A 108 282 156 HOH HOH . 
G 4 HOH A 109 283 157 HOH HOH . 
G 4 HOH A 110 284 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 36.094 12.725 4.703 1 68.42 ? C1 GOL 210 A 1 
HETATM 2 O O1 GOL . . . D 3 34.947 12.027 5.219 1 67.93 ? O1 GOL 210 A 1 
HETATM 3 C C2 GOL . . . D 3 36.504 13.924 5.579 1 68.04 ? C2 GOL 210 A 1 
HETATM 4 O O2 GOL . . . D 3 36.308 13.657 6.98 1 68.53 ? O2 GOL 210 A 1 
HETATM 5 C C3 GOL . . . D 3 35.71 15.161 5.145 1 68.03 ? C3 GOL 210 A 1 
HETATM 6 O O3 GOL . . . D 3 36.534 16.329 5.237 1 67.81 ? O3 GOL 210 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#