data_3SPF # _model_server_result.job_id WP1zpGZ5cVISfuYnHIgCFw _model_server_result.datetime_utc '2024-12-05 01:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3spf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":212}' # _entry.id 3SPF # _exptl.entry_id 3SPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SPF _cell.length_a 103.748 _cell.length_b 103.748 _cell.length_c 35.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 206 n n C1 C2 GOL sing 207 n n C1 H11 GOL sing 208 n n C1 H12 GOL sing 209 n n O1 HO1 GOL sing 210 n n C2 O2 GOL sing 211 n n C2 C3 GOL sing 212 n n C2 H2 GOL sing 213 n n O2 HO2 GOL sing 214 n n C3 O3 GOL sing 215 n n C3 H31 GOL sing 216 n n C3 H32 GOL sing 217 n n O3 HO3 GOL sing 218 n n # _atom_sites.entry_id 3SPF _atom_sites.fract_transf_matrix[1][1] 0.009639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B50 A 1 501 501 B50 B50 . C 3 GOL A 1 209 2 GOL GOL . D 3 GOL A 1 210 3 GOL GOL . E 3 GOL A 1 211 6 GOL GOL . F 3 GOL A 1 212 7 GOL GOL . G 4 HOH A 1 26 26 HOH HOH . G 4 HOH A 2 27 27 HOH HOH . G 4 HOH A 3 28 28 HOH HOH . G 4 HOH A 4 29 29 HOH HOH . G 4 HOH A 5 30 30 HOH HOH . G 4 HOH A 6 31 31 HOH HOH . G 4 HOH A 7 32 32 HOH HOH . G 4 HOH A 8 33 33 HOH HOH . G 4 HOH A 9 34 34 HOH HOH . G 4 HOH A 10 35 35 HOH HOH . G 4 HOH A 11 36 36 HOH HOH . G 4 HOH A 12 37 37 HOH HOH . G 4 HOH A 13 38 38 HOH HOH . G 4 HOH A 14 39 39 HOH HOH . G 4 HOH A 15 40 40 HOH HOH . G 4 HOH A 16 41 41 HOH HOH . G 4 HOH A 17 42 42 HOH HOH . G 4 HOH A 18 43 43 HOH HOH . G 4 HOH A 19 44 44 HOH HOH . G 4 HOH A 20 45 45 HOH HOH . G 4 HOH A 21 46 46 HOH HOH . G 4 HOH A 22 47 47 HOH HOH . G 4 HOH A 23 48 48 HOH HOH . G 4 HOH A 24 49 49 HOH HOH . G 4 HOH A 25 50 50 HOH HOH . G 4 HOH A 26 51 51 HOH HOH . G 4 HOH A 27 52 52 HOH HOH . G 4 HOH A 28 53 53 HOH HOH . G 4 HOH A 29 54 54 HOH HOH . G 4 HOH A 30 55 55 HOH HOH . G 4 HOH A 31 56 56 HOH HOH . G 4 HOH A 32 57 57 HOH HOH . G 4 HOH A 33 58 58 HOH HOH . G 4 HOH A 34 59 59 HOH HOH . G 4 HOH A 35 60 60 HOH HOH . G 4 HOH A 36 61 61 HOH HOH . G 4 HOH A 37 62 62 HOH HOH . G 4 HOH A 38 65 65 HOH HOH . G 4 HOH A 39 213 1 HOH HOH . G 4 HOH A 40 214 2 HOH HOH . G 4 HOH A 41 215 3 HOH HOH . G 4 HOH A 42 216 4 HOH HOH . G 4 HOH A 43 217 5 HOH HOH . G 4 HOH A 44 218 6 HOH HOH . G 4 HOH A 45 219 7 HOH HOH . G 4 HOH A 46 220 8 HOH HOH . G 4 HOH A 47 221 9 HOH HOH . G 4 HOH A 48 222 10 HOH HOH . G 4 HOH A 49 223 11 HOH HOH . G 4 HOH A 50 224 12 HOH HOH . G 4 HOH A 51 225 13 HOH HOH . G 4 HOH A 52 226 14 HOH HOH . G 4 HOH A 53 227 15 HOH HOH . G 4 HOH A 54 228 16 HOH HOH . G 4 HOH A 55 229 17 HOH HOH . G 4 HOH A 56 230 18 HOH HOH . G 4 HOH A 57 231 19 HOH HOH . G 4 HOH A 58 232 20 HOH HOH . G 4 HOH A 59 233 21 HOH HOH . G 4 HOH A 60 234 22 HOH HOH . G 4 HOH A 61 235 23 HOH HOH . G 4 HOH A 62 236 24 HOH HOH . G 4 HOH A 63 237 25 HOH HOH . G 4 HOH A 64 238 66 HOH HOH . G 4 HOH A 65 239 67 HOH HOH . G 4 HOH A 66 240 68 HOH HOH . G 4 HOH A 67 241 71 HOH HOH . G 4 HOH A 68 242 72 HOH HOH . G 4 HOH A 69 243 73 HOH HOH . G 4 HOH A 70 244 74 HOH HOH . G 4 HOH A 71 245 75 HOH HOH . G 4 HOH A 72 246 79 HOH HOH . G 4 HOH A 73 247 80 HOH HOH . G 4 HOH A 74 248 81 HOH HOH . G 4 HOH A 75 249 82 HOH HOH . G 4 HOH A 76 250 85 HOH HOH . G 4 HOH A 77 251 86 HOH HOH . G 4 HOH A 78 252 87 HOH HOH . G 4 HOH A 79 253 89 HOH HOH . G 4 HOH A 80 254 90 HOH HOH . G 4 HOH A 81 255 91 HOH HOH . G 4 HOH A 82 256 94 HOH HOH . G 4 HOH A 83 257 95 HOH HOH . G 4 HOH A 84 258 96 HOH HOH . G 4 HOH A 85 259 101 HOH HOH . G 4 HOH A 86 260 103 HOH HOH . G 4 HOH A 87 261 104 HOH HOH . G 4 HOH A 88 262 106 HOH HOH . G 4 HOH A 89 263 112 HOH HOH . G 4 HOH A 90 264 114 HOH HOH . G 4 HOH A 91 265 116 HOH HOH . G 4 HOH A 92 266 117 HOH HOH . G 4 HOH A 93 267 119 HOH HOH . G 4 HOH A 94 268 124 HOH HOH . G 4 HOH A 95 269 125 HOH HOH . G 4 HOH A 96 270 126 HOH HOH . G 4 HOH A 97 271 127 HOH HOH . G 4 HOH A 98 272 128 HOH HOH . G 4 HOH A 99 273 140 HOH HOH . G 4 HOH A 100 274 141 HOH HOH . G 4 HOH A 101 275 142 HOH HOH . G 4 HOH A 102 276 145 HOH HOH . G 4 HOH A 103 277 146 HOH HOH . G 4 HOH A 104 278 147 HOH HOH . G 4 HOH A 105 279 148 HOH HOH . G 4 HOH A 106 280 149 HOH HOH . G 4 HOH A 107 281 151 HOH HOH . G 4 HOH A 108 282 156 HOH HOH . G 4 HOH A 109 283 157 HOH HOH . G 4 HOH A 110 284 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 32.675 8.476 -27.159 1 66.58 ? C1 GOL 212 A 1 HETATM 2 O O1 GOL . . . F 3 32.612 7.345 -26.276 1 65.95 ? O1 GOL 212 A 1 HETATM 3 C C2 GOL . . . F 3 33.847 9.418 -26.833 1 66.18 ? C2 GOL 212 A 1 HETATM 4 O O2 GOL . . . F 3 33.989 9.579 -25.424 1 66.26 ? O2 GOL 212 A 1 HETATM 5 C C3 GOL . . . F 3 33.571 10.781 -27.477 1 66.26 ? C3 GOL 212 A 1 HETATM 6 O O3 GOL . . . F 3 34.614 11.709 -27.161 1 66.13 ? O3 GOL 212 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #