data_3SQ6 # _model_server_result.job_id -p96ghg5zAZyP69iqM2Hag _model_server_result.datetime_utc '2024-11-08 12:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":300}' # _entry.id 3SQ6 # _exptl.entry_id 3SQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.687 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EPIBATIDINE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.65 _cell.angle_gamma 90 _cell.entry_id 3SQ6 _cell.length_a 81.237 _cell.length_b 141.069 _cell.length_c 130.207 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,L,M,N,O,P,Q,R,S,T,U,V,W,X,IA,JA,KA,LA,MA 1 1 F,G,H,I,J,K,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,NA,OA,PA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 O N N ? 3 R N N ? 3 U N N ? 3 W N N ? 3 Y N N ? 3 AA N N ? 3 CA N N ? 3 FA N N ? 3 HA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n K NAG 1 K 1 NAG I 901 NAG 2 n K NAG 2 K 2 NAG I 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 186 A CYS 186 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 186 C CYS 186 1_555 C SG CYS 187 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 D SG CYS 186 D CYS 186 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 E SG CYS 186 E CYS 186 1_555 E SG CYS 187 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 125 F CYS 125 1_555 F SG CYS 138 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 F SG CYS 186 F CYS 186 1_555 F SG CYS 187 F CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 G SG CYS 125 G CYS 125 1_555 G SG CYS 138 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf14 G SG CYS 186 G CYS 186 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 H SG CYS 125 H CYS 125 1_555 H SG CYS 138 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 H SG CYS 186 H CYS 186 1_555 H SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf17 I SG CYS 125 I CYS 125 1_555 I SG CYS 138 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf18 I SG CYS 186 I CYS 186 1_555 I SG CYS 187 I CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf19 J SG CYS 125 J CYS 125 1_555 J SG CYS 138 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf20 J SG CYS 186 J CYS 186 1_555 J SG CYS 187 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 66 A ASN 66 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 108 A ASN 108 1_555 N C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 B ND2 ASN 66 B ASN 66 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 B ND2 ASN 108 B ASN 108 1_555 Q C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 66 C ASN 66 1_555 S C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C ND2 ASN 108 C ASN 108 1_555 T C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale7 D ND2 ASN 66 D ASN 66 1_555 V C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 E ND2 ASN 66 E ASN 66 1_555 X C1 NAG . E NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale9 F ND2 ASN 66 F ASN 66 1_555 Z C1 NAG . F NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 G ND2 ASN 108 G ASN 108 1_555 BA C1 NAG . G NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 H ND2 ASN 66 H ASN 66 1_555 DA C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale12 H ND2 ASN 108 H ASN 108 1_555 EA C1 NAG . H NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale13 I ND2 ASN 66 I ASN 66 1_555 GA C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale14 I ND2 ASN 108 I ASN 108 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? # _chem_comp.formula 'C11 H13 Cl N2' _chem_comp.formula_weight 208.687 _chem_comp.id EPJ _chem_comp.mon_nstd_flag . _chem_comp.name EPIBATIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R)-2-(6-CHLOROPYRIDIN-3-YL)-7-AZABICYCLO[2.2.1]HEPTANE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPJ sing 83 n n C1 C6 EPJ sing 84 n n C1 C7 EPJ sing 85 n n C1 H1 EPJ sing 86 n n C2 C3 EPJ sing 87 n n C2 H2C1 EPJ sing 88 n n C2 H2C2 EPJ sing 89 n n C3 C4 EPJ sing 90 n n C3 N1 EPJ sing 91 n n C3 H3 EPJ sing 92 n n C4 C5 EPJ sing 93 n n C4 H4C1 EPJ sing 94 n n C4 H4C2 EPJ sing 95 n n C5 C6 EPJ sing 96 n n C5 H5C1 EPJ sing 97 n n C5 H5C2 EPJ sing 98 n n C6 N1 EPJ sing 99 n n C6 H6 EPJ sing 100 n n N1 HA EPJ sing 101 n n C7 C8 EPJ doub 102 n y C7 C11 EPJ sing 103 n y C8 C9 EPJ sing 104 n y C8 H8 EPJ sing 105 n n C9 C10 EPJ doub 106 n y C9 H9 EPJ sing 107 n n C10 CL EPJ sing 108 n n C10 N2 EPJ sing 109 n y N2 C11 EPJ doub 110 n y C11 H11 EPJ sing 111 n n # _atom_sites.entry_id 3SQ6 _atom_sites.fract_transf_matrix[1][1] 0.01231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 3 EPJ A 1 300 300 EPJ EPJ . M 4 NAG A 1 801 801 NAG NAG . N 4 NAG A 1 901 901 NAG NAG . O 3 EPJ B 1 300 300 EPJ EPJ . P 4 NAG B 1 801 801 NAG NAG . Q 4 NAG B 1 901 901 NAG NAG . R 3 EPJ C 1 300 300 EPJ EPJ . S 4 NAG C 1 801 801 NAG NAG . T 4 NAG C 1 901 901 NAG NAG . U 3 EPJ D 1 300 300 EPJ EPJ . V 4 NAG D 1 801 801 NAG NAG . W 3 EPJ E 1 300 300 EPJ EPJ . X 4 NAG E 1 801 801 NAG NAG . Y 3 EPJ F 1 300 300 EPJ EPJ . Z 4 NAG F 1 801 801 NAG NAG . AA 3 EPJ G 1 300 300 EPJ EPJ . BA 4 NAG G 1 901 901 NAG NAG . CA 3 EPJ H 1 300 300 EPJ EPJ . DA 4 NAG H 1 801 801 NAG NAG . EA 4 NAG H 1 901 901 NAG NAG . FA 3 EPJ I 1 300 300 EPJ EPJ . GA 4 NAG I 1 801 801 NAG NAG . HA 3 EPJ J 1 300 300 EPJ EPJ . IA 5 HOH A 1 205 1 HOH TIP . JA 5 HOH B 1 205 9 HOH TIP . KA 5 HOH C 1 205 14 HOH TIP . LA 5 HOH D 1 205 7 HOH TIP . LA 5 HOH D 2 206 16 HOH TIP . MA 5 HOH E 1 205 4 HOH TIP . MA 5 HOH E 2 206 5 HOH TIP . MA 5 HOH E 3 207 13 HOH TIP . NA 5 HOH F 1 205 8 HOH TIP . NA 5 HOH F 2 206 10 HOH TIP . NA 5 HOH F 3 207 11 HOH TIP . OA 5 HOH H 1 205 6 HOH TIP . OA 5 HOH H 2 206 15 HOH TIP . PA 5 HOH I 1 205 3 HOH TIP . PA 5 HOH I 2 206 12 HOH TIP . QA 5 HOH J 1 205 2 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPJ . . . HA 3 5.002 -23.13 80.304 1 47.28 ? C1 EPJ 300 J 1 HETATM 2 C C2 EPJ . . . HA 3 6.221 -22.952 81.28 1 41.43 ? C2 EPJ 300 J 1 HETATM 3 C C3 EPJ . . . HA 3 5.861 -21.63 82.021 1 42.18 ? C3 EPJ 300 J 1 HETATM 4 C C4 EPJ . . . HA 3 4.779 -22.046 83.067 1 40.96 ? C4 EPJ 300 J 1 HETATM 5 C C5 EPJ . . . HA 3 3.54 -22.199 82.164 1 39.07 ? C5 EPJ 300 J 1 HETATM 6 C C6 EPJ . . . HA 3 4.114 -21.855 80.689 1 42.89 ? C6 EPJ 300 J 1 HETATM 7 N N1 EPJ . . . HA 3 5.127 -20.815 80.998 1 40.7 ? N1 EPJ 300 J 1 HETATM 8 C C7 EPJ . . . HA 3 5.569 -23.128 78.859 1 43.87 ? C7 EPJ 300 J 1 HETATM 9 C C8 EPJ . . . HA 3 6.546 -24.095 78.48 1 50.31 ? C8 EPJ 300 J 1 HETATM 10 C C9 EPJ . . . HA 3 7.05 -24.128 77.162 1 48.24 ? C9 EPJ 300 J 1 HETATM 11 C C10 EPJ . . . HA 3 6.568 -23.202 76.249 1 48.41 ? C10 EPJ 300 J 1 HETATM 12 CL CL EPJ . . . HA 3 7.157 -23.216 74.627 1 37.61 ? CL EPJ 300 J 1 HETATM 13 N N2 EPJ . . . HA 3 5.64 -22.293 76.633 1 50.59 ? N2 EPJ 300 J 1 HETATM 14 C C11 EPJ . . . HA 3 5.139 -22.235 77.887 1 39.73 ? C11 EPJ 300 J 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #