data_3SQ6
#
_model_server_result.job_id            tSPTGb0jqBCLpOOsfCWwMw 
_model_server_result.datetime_utc      '2024-11-28 13:26:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":300}' 
#
_entry.id    3SQ6 
#
_exptl.entry_id    3SQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              208.687 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EPIBATIDINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.65 
_cell.angle_gamma         90 
_cell.entry_id            3SQ6 
_cell.length_a            81.237 
_cell.length_b            141.069 
_cell.length_c            130.207 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,L,M,N,O,P,Q,R,S,T,U,V,W,X,IA,JA,KA,LA,MA 1 1 
F,G,H,I,J,K,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,NA,OA,PA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 O N N 
? 3 R N N 
? 3 U N N 
? 3 W N N 
? 3 Y N N 
? 3 AA N N 
? 3 CA N N 
? 3 FA N N 
? 3 HA N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n K NAG 1 K 1 NAG I 901 NAG 
2 n K NAG 2 K 2 NAG I 902 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 186 A CYS 186 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 C SG CYS 186 C CYS 186 1_555 C SG CYS 187 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 186 D CYS 186 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf10 E SG CYS 186 E CYS 186 1_555 E SG CYS 187 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf11 F SG CYS 125 F CYS 125 1_555 F SG CYS 138 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 F SG CYS 186 F CYS 186 1_555 F SG CYS 187 F CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf13 G SG CYS 125 G CYS 125 1_555 G SG CYS 138 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf14 G SG CYS 186 G CYS 186 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf15 H SG CYS 125 H CYS 125 1_555 H SG CYS 138 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 H SG CYS 186 H CYS 186 1_555 H SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf17 I SG CYS 125 I CYS 125 1_555 I SG CYS 138 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf18 I SG CYS 186 I CYS 186 1_555 I SG CYS 187 I CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf19 J SG CYS 125 J CYS 125 1_555 J SG CYS 138 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf20 J SG CYS 186 J CYS 186 1_555 J SG CYS 187 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 66 A ASN 66 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 108 A ASN 108 1_555 N C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 B ND2 ASN 66 B ASN 66 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale4 B ND2 ASN 108 B ASN 108 1_555 Q C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 C ND2 ASN 66 C ASN 66 1_555 S C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale6 C ND2 ASN 108 C ASN 108 1_555 T C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale7 D ND2 ASN 66 D ASN 66 1_555 V C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 E ND2 ASN 66 E ASN 66 1_555 X C1 NAG . E NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale9 F ND2 ASN 66 F ASN 66 1_555 Z C1 NAG . F NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale10 G ND2 ASN 108 G ASN 108 1_555 BA C1 NAG . G NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale11 H ND2 ASN 66 H ASN 66 1_555 DA C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale12 H ND2 ASN 108 H ASN 108 1_555 EA C1 NAG . H NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale13 I ND2 ASN 66 I ASN 66 1_555 GA C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale14 I ND2 ASN 108 I ASN 108 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale15 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
#
_chem_comp.formula           'C11 H13 Cl N2' 
_chem_comp.formula_weight    208.687 
_chem_comp.id                EPJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EPIBATIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (2R)-2-(6-CHLOROPYRIDIN-3-YL)-7-AZABICYCLO[2.2.1]HEPTANE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 EPJ sing 83 n n 
C1 C6 EPJ sing 84 n n 
C1 C7 EPJ sing 85 n n 
C1 H1 EPJ sing 86 n n 
C2 C3 EPJ sing 87 n n 
C2 H2C1 EPJ sing 88 n n 
C2 H2C2 EPJ sing 89 n n 
C3 C4 EPJ sing 90 n n 
C3 N1 EPJ sing 91 n n 
C3 H3 EPJ sing 92 n n 
C4 C5 EPJ sing 93 n n 
C4 H4C1 EPJ sing 94 n n 
C4 H4C2 EPJ sing 95 n n 
C5 C6 EPJ sing 96 n n 
C5 H5C1 EPJ sing 97 n n 
C5 H5C2 EPJ sing 98 n n 
C6 N1 EPJ sing 99 n n 
C6 H6 EPJ sing 100 n n 
N1 HA EPJ sing 101 n n 
C7 C8 EPJ doub 102 n y 
C7 C11 EPJ sing 103 n y 
C8 C9 EPJ sing 104 n y 
C8 H8 EPJ sing 105 n n 
C9 C10 EPJ doub 106 n y 
C9 H9 EPJ sing 107 n n 
C10 CL EPJ sing 108 n n 
C10 N2 EPJ sing 109 n y 
N2 C11 EPJ doub 110 n y 
C11 H11 EPJ sing 111 n n 
#
_atom_sites.entry_id                     3SQ6 
_atom_sites.fract_transf_matrix[1][1]    0.01231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002093 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 3 EPJ A 1 300 300 EPJ EPJ . 
M 4 NAG A 1 801 801 NAG NAG . 
N 4 NAG A 1 901 901 NAG NAG . 
O 3 EPJ B 1 300 300 EPJ EPJ . 
P 4 NAG B 1 801 801 NAG NAG . 
Q 4 NAG B 1 901 901 NAG NAG . 
R 3 EPJ C 1 300 300 EPJ EPJ . 
S 4 NAG C 1 801 801 NAG NAG . 
T 4 NAG C 1 901 901 NAG NAG . 
U 3 EPJ D 1 300 300 EPJ EPJ . 
V 4 NAG D 1 801 801 NAG NAG . 
W 3 EPJ E 1 300 300 EPJ EPJ . 
X 4 NAG E 1 801 801 NAG NAG . 
Y 3 EPJ F 1 300 300 EPJ EPJ . 
Z 4 NAG F 1 801 801 NAG NAG . 
AA 3 EPJ G 1 300 300 EPJ EPJ . 
BA 4 NAG G 1 901 901 NAG NAG . 
CA 3 EPJ H 1 300 300 EPJ EPJ . 
DA 4 NAG H 1 801 801 NAG NAG . 
EA 4 NAG H 1 901 901 NAG NAG . 
FA 3 EPJ I 1 300 300 EPJ EPJ . 
GA 4 NAG I 1 801 801 NAG NAG . 
HA 3 EPJ J 1 300 300 EPJ EPJ . 
IA 5 HOH A 1 205 1 HOH TIP . 
JA 5 HOH B 1 205 9 HOH TIP . 
KA 5 HOH C 1 205 14 HOH TIP . 
LA 5 HOH D 1 205 7 HOH TIP . 
LA 5 HOH D 2 206 16 HOH TIP . 
MA 5 HOH E 1 205 4 HOH TIP . 
MA 5 HOH E 2 206 5 HOH TIP . 
MA 5 HOH E 3 207 13 HOH TIP . 
NA 5 HOH F 1 205 8 HOH TIP . 
NA 5 HOH F 2 206 10 HOH TIP . 
NA 5 HOH F 3 207 11 HOH TIP . 
OA 5 HOH H 1 205 6 HOH TIP . 
OA 5 HOH H 2 206 15 HOH TIP . 
PA 5 HOH I 1 205 3 HOH TIP . 
PA 5 HOH I 2 206 12 HOH TIP . 
QA 5 HOH J 1 205 2 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EPJ . . . R 3 29.095 -25.156 1.995 1 44.51 ? C1 EPJ 300 C 1 
HETATM 2 C C2 EPJ . . . R 3 27.891 -25.464 1.045 1 40.19 ? C2 EPJ 300 C 1 
HETATM 3 C C3 EPJ . . . R 3 28.332 -24.771 -0.317 1 49.18 ? C3 EPJ 300 C 1 
HETATM 4 C C4 EPJ . . . R 3 29.388 -25.734 -0.961 1 43.5 ? C4 EPJ 300 C 1 
HETATM 5 C C5 EPJ . . . R 3 30.612 -25.452 -0.07 1 43.17 ? C5 EPJ 300 C 1 
HETATM 6 C C6 EPJ . . . R 3 30.058 -24.344 0.984 1 48.65 ? C6 EPJ 300 C 1 
HETATM 7 N N1 EPJ . . . R 3 29.127 -23.574 0.105 1 50.32 ? N1 EPJ 300 C 1 
HETATM 8 C C7 EPJ . . . R 3 28.524 -24.332 3.192 1 47.56 ? C7 EPJ 300 C 1 
HETATM 9 C C8 EPJ . . . R 3 27.74 -24.988 4.188 1 52.11 ? C8 EPJ 300 C 1 
HETATM 10 C C9 EPJ . . . R 3 27.214 -24.255 5.291 1 50.48 ? C9 EPJ 300 C 1 
HETATM 11 C C10 EPJ . . . R 3 27.475 -22.882 5.392 1 47.28 ? C10 EPJ 300 C 1 
HETATM 12 CL CL EPJ . . . R 3 26.839 -21.979 6.714 1 33.89 ? CL EPJ 300 C 1 
HETATM 13 N N2 EPJ . . . R 3 28.218 -22.268 4.452 1 54.47 ? N2 EPJ 300 C 1 
HETATM 14 C C11 EPJ . . . R 3 28.746 -22.938 3.369 1 55.93 ? C11 EPJ 300 C 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#