data_3SQ6 # _model_server_result.job_id cx8CoXPphdFHySe5Pisthg _model_server_result.datetime_utc '2024-11-24 20:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":801}' # _entry.id 3SQ6 # _exptl.entry_id 3SQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.65 _cell.angle_gamma 90 _cell.entry_id 3SQ6 _cell.length_a 81.237 _cell.length_b 141.069 _cell.length_c 130.207 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,L,M,N,O,P,Q,R,S,T,U,V,W,X,IA,JA,KA,LA,MA 1 1 F,G,H,I,J,K,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,NA,OA,PA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N ? 4 V N N ? 4 X N N ? 4 Z N N ? 4 BA N N ? 4 DA N N ? 4 EA N N ? 4 GA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n K NAG 1 K 1 NAG I 901 NAG 2 n K NAG 2 K 2 NAG I 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 186 A CYS 186 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 186 C CYS 186 1_555 C SG CYS 187 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 D SG CYS 186 D CYS 186 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 E SG CYS 186 E CYS 186 1_555 E SG CYS 187 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 125 F CYS 125 1_555 F SG CYS 138 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 F SG CYS 186 F CYS 186 1_555 F SG CYS 187 F CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 G SG CYS 125 G CYS 125 1_555 G SG CYS 138 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf14 G SG CYS 186 G CYS 186 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 H SG CYS 125 H CYS 125 1_555 H SG CYS 138 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 H SG CYS 186 H CYS 186 1_555 H SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf17 I SG CYS 125 I CYS 125 1_555 I SG CYS 138 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf18 I SG CYS 186 I CYS 186 1_555 I SG CYS 187 I CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf19 J SG CYS 125 J CYS 125 1_555 J SG CYS 138 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf20 J SG CYS 186 J CYS 186 1_555 J SG CYS 187 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 66 A ASN 66 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 108 A ASN 108 1_555 N C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 B ND2 ASN 66 B ASN 66 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 B ND2 ASN 108 B ASN 108 1_555 Q C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 66 C ASN 66 1_555 S C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C ND2 ASN 108 C ASN 108 1_555 T C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale7 D ND2 ASN 66 D ASN 66 1_555 V C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 E ND2 ASN 66 E ASN 66 1_555 X C1 NAG . E NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale9 F ND2 ASN 66 F ASN 66 1_555 Z C1 NAG . F NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 G ND2 ASN 108 G ASN 108 1_555 BA C1 NAG . G NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 H ND2 ASN 66 H ASN 66 1_555 DA C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale12 H ND2 ASN 108 H ASN 108 1_555 EA C1 NAG . H NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale13 I ND2 ASN 66 I ASN 66 1_555 GA C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale14 I ND2 ASN 108 I ASN 108 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 266 n n C1 O1 NAG sing 267 n n C1 O5 NAG sing 268 n n C1 H1 NAG sing 269 n n C2 C3 NAG sing 270 n n C2 N2 NAG sing 271 n n C2 H2 NAG sing 272 n n C3 C4 NAG sing 273 n n C3 O3 NAG sing 274 n n C3 H3 NAG sing 275 n n C4 C5 NAG sing 276 n n C4 O4 NAG sing 277 n n C4 H4 NAG sing 278 n n C5 C6 NAG sing 279 n n C5 O5 NAG sing 280 n n C5 H5 NAG sing 281 n n C6 O6 NAG sing 282 n n C6 H61 NAG sing 283 n n C6 H62 NAG sing 284 n n C7 C8 NAG sing 285 n n C7 N2 NAG sing 286 n n C7 O7 NAG doub 287 n n C8 H81 NAG sing 288 n n C8 H82 NAG sing 289 n n C8 H83 NAG sing 290 n n N2 HN2 NAG sing 291 n n O1 HO1 NAG sing 292 n n O3 HO3 NAG sing 293 n n O4 HO4 NAG sing 294 n n O6 HO6 NAG sing 295 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3SQ6 _atom_sites.fract_transf_matrix[1][1] 0.01231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 3 EPJ A 1 300 300 EPJ EPJ . M 4 NAG A 1 801 801 NAG NAG . N 4 NAG A 1 901 901 NAG NAG . O 3 EPJ B 1 300 300 EPJ EPJ . P 4 NAG B 1 801 801 NAG NAG . Q 4 NAG B 1 901 901 NAG NAG . R 3 EPJ C 1 300 300 EPJ EPJ . S 4 NAG C 1 801 801 NAG NAG . T 4 NAG C 1 901 901 NAG NAG . U 3 EPJ D 1 300 300 EPJ EPJ . V 4 NAG D 1 801 801 NAG NAG . W 3 EPJ E 1 300 300 EPJ EPJ . X 4 NAG E 1 801 801 NAG NAG . Y 3 EPJ F 1 300 300 EPJ EPJ . Z 4 NAG F 1 801 801 NAG NAG . AA 3 EPJ G 1 300 300 EPJ EPJ . BA 4 NAG G 1 901 901 NAG NAG . CA 3 EPJ H 1 300 300 EPJ EPJ . DA 4 NAG H 1 801 801 NAG NAG . EA 4 NAG H 1 901 901 NAG NAG . FA 3 EPJ I 1 300 300 EPJ EPJ . GA 4 NAG I 1 801 801 NAG NAG . HA 3 EPJ J 1 300 300 EPJ EPJ . IA 5 HOH A 1 205 1 HOH TIP . JA 5 HOH B 1 205 9 HOH TIP . KA 5 HOH C 1 205 14 HOH TIP . LA 5 HOH D 1 205 7 HOH TIP . LA 5 HOH D 2 206 16 HOH TIP . MA 5 HOH E 1 205 4 HOH TIP . MA 5 HOH E 2 206 5 HOH TIP . MA 5 HOH E 3 207 13 HOH TIP . NA 5 HOH F 1 205 8 HOH TIP . NA 5 HOH F 2 206 10 HOH TIP . NA 5 HOH F 3 207 11 HOH TIP . OA 5 HOH H 1 205 6 HOH TIP . OA 5 HOH H 2 206 15 HOH TIP . PA 5 HOH I 1 205 3 HOH TIP . PA 5 HOH I 2 206 12 HOH TIP . QA 5 HOH J 1 205 2 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . X 4 19.264 -7.927 46.292 1 108.77 ? C1 NAG 801 E 1 HETATM 2 C C2 NAG . . . X 4 18.866 -6.75 47.223 1 109.13 ? C2 NAG 801 E 1 HETATM 3 C C3 NAG . . . X 4 18.003 -7.252 48.407 1 108.43 ? C3 NAG 801 E 1 HETATM 4 C C4 NAG . . . X 4 16.823 -8.095 47.898 1 106.22 ? C4 NAG 801 E 1 HETATM 5 C C5 NAG . . . X 4 17.384 -9.234 47.032 1 104.67 ? C5 NAG 801 E 1 HETATM 6 C C6 NAG . . . X 4 16.319 -10.15 46.478 1 101.92 ? C6 NAG 801 E 1 HETATM 7 C C7 NAG . . . X 4 20.571 -5.027 47.084 1 101.78 ? C7 NAG 801 E 1 HETATM 8 C C8 NAG . . . X 4 21.71 -5.289 46.106 1 97.01 ? C8 NAG 801 E 1 HETATM 9 N N2 NAG . . . X 4 20.058 -6.077 47.727 1 105.36 ? N2 NAG 801 E 1 HETATM 10 O O3 NAG . . . X 4 17.515 -6.147 49.155 1 109.84 ? O3 NAG 801 E 1 HETATM 11 O O4 NAG . . . X 4 16.065 -8.611 48.994 1 99.55 ? O4 NAG 801 E 1 HETATM 12 O O5 NAG . . . X 4 18.1 -8.682 45.9 1 107 ? O5 NAG 801 E 1 HETATM 13 O O6 NAG . . . X 4 16.35 -10.159 45.061 1 95.42 ? O6 NAG 801 E 1 HETATM 14 O O7 NAG . . . X 4 20.164 -3.875 47.254 1 96.93 ? O7 NAG 801 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #