data_3SQ6
#
_model_server_result.job_id            XxIG2LSd2IIzXjVQfVtn5Q 
_model_server_result.datetime_utc      '2024-11-08 11:55:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":901}' 
#
_entry.id    3SQ6 
#
_exptl.entry_id    3SQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.65 
_cell.angle_gamma         90 
_cell.entry_id            3SQ6 
_cell.length_a            81.237 
_cell.length_b            141.069 
_cell.length_c            130.207 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,L,M,N,O,P,Q,R,S,T,U,V,W,X,IA,JA,KA,LA,MA 1 1 
F,G,H,I,J,K,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,NA,OA,PA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 Q N N 
? 4 S N N 
? 4 T N N 
? 4 V N N 
? 4 X N N 
? 4 Z N N 
? 4 BA N N 
? 4 DA N N 
? 4 EA N N 
? 4 GA N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n K NAG 1 K 1 NAG I 901 NAG 
2 n K NAG 2 K 2 NAG I 902 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 186 A CYS 186 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 C SG CYS 186 C CYS 186 1_555 C SG CYS 187 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 186 D CYS 186 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf10 E SG CYS 186 E CYS 186 1_555 E SG CYS 187 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf11 F SG CYS 125 F CYS 125 1_555 F SG CYS 138 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 F SG CYS 186 F CYS 186 1_555 F SG CYS 187 F CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf13 G SG CYS 125 G CYS 125 1_555 G SG CYS 138 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf14 G SG CYS 186 G CYS 186 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf15 H SG CYS 125 H CYS 125 1_555 H SG CYS 138 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 H SG CYS 186 H CYS 186 1_555 H SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf17 I SG CYS 125 I CYS 125 1_555 I SG CYS 138 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf18 I SG CYS 186 I CYS 186 1_555 I SG CYS 187 I CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf19 J SG CYS 125 J CYS 125 1_555 J SG CYS 138 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf20 J SG CYS 186 J CYS 186 1_555 J SG CYS 187 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 66 A ASN 66 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 108 A ASN 108 1_555 N C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 B ND2 ASN 66 B ASN 66 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale4 B ND2 ASN 108 B ASN 108 1_555 Q C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 C ND2 ASN 66 C ASN 66 1_555 S C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale6 C ND2 ASN 108 C ASN 108 1_555 T C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale7 D ND2 ASN 66 D ASN 66 1_555 V C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 E ND2 ASN 66 E ASN 66 1_555 X C1 NAG . E NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale9 F ND2 ASN 66 F ASN 66 1_555 Z C1 NAG . F NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale10 G ND2 ASN 108 G ASN 108 1_555 BA C1 NAG . G NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale11 H ND2 ASN 66 H ASN 66 1_555 DA C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale12 H ND2 ASN 108 H ASN 108 1_555 EA C1 NAG . H NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale13 I ND2 ASN 66 I ASN 66 1_555 GA C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale14 I ND2 ASN 108 I ASN 108 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale15 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 266 n n 
C1 O1 NAG sing 267 n n 
C1 O5 NAG sing 268 n n 
C1 H1 NAG sing 269 n n 
C2 C3 NAG sing 270 n n 
C2 N2 NAG sing 271 n n 
C2 H2 NAG sing 272 n n 
C3 C4 NAG sing 273 n n 
C3 O3 NAG sing 274 n n 
C3 H3 NAG sing 275 n n 
C4 C5 NAG sing 276 n n 
C4 O4 NAG sing 277 n n 
C4 H4 NAG sing 278 n n 
C5 C6 NAG sing 279 n n 
C5 O5 NAG sing 280 n n 
C5 H5 NAG sing 281 n n 
C6 O6 NAG sing 282 n n 
C6 H61 NAG sing 283 n n 
C6 H62 NAG sing 284 n n 
C7 C8 NAG sing 285 n n 
C7 N2 NAG sing 286 n n 
C7 O7 NAG doub 287 n n 
C8 H81 NAG sing 288 n n 
C8 H82 NAG sing 289 n n 
C8 H83 NAG sing 290 n n 
N2 HN2 NAG sing 291 n n 
O1 HO1 NAG sing 292 n n 
O3 HO3 NAG sing 293 n n 
O4 HO4 NAG sing 294 n n 
O6 HO6 NAG sing 295 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3SQ6 
_atom_sites.fract_transf_matrix[1][1]    0.01231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002093 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 3 EPJ A 1 300 300 EPJ EPJ . 
M 4 NAG A 1 801 801 NAG NAG . 
N 4 NAG A 1 901 901 NAG NAG . 
O 3 EPJ B 1 300 300 EPJ EPJ . 
P 4 NAG B 1 801 801 NAG NAG . 
Q 4 NAG B 1 901 901 NAG NAG . 
R 3 EPJ C 1 300 300 EPJ EPJ . 
S 4 NAG C 1 801 801 NAG NAG . 
T 4 NAG C 1 901 901 NAG NAG . 
U 3 EPJ D 1 300 300 EPJ EPJ . 
V 4 NAG D 1 801 801 NAG NAG . 
W 3 EPJ E 1 300 300 EPJ EPJ . 
X 4 NAG E 1 801 801 NAG NAG . 
Y 3 EPJ F 1 300 300 EPJ EPJ . 
Z 4 NAG F 1 801 801 NAG NAG . 
AA 3 EPJ G 1 300 300 EPJ EPJ . 
BA 4 NAG G 1 901 901 NAG NAG . 
CA 3 EPJ H 1 300 300 EPJ EPJ . 
DA 4 NAG H 1 801 801 NAG NAG . 
EA 4 NAG H 1 901 901 NAG NAG . 
FA 3 EPJ I 1 300 300 EPJ EPJ . 
GA 4 NAG I 1 801 801 NAG NAG . 
HA 3 EPJ J 1 300 300 EPJ EPJ . 
IA 5 HOH A 1 205 1 HOH TIP . 
JA 5 HOH B 1 205 9 HOH TIP . 
KA 5 HOH C 1 205 14 HOH TIP . 
LA 5 HOH D 1 205 7 HOH TIP . 
LA 5 HOH D 2 206 16 HOH TIP . 
MA 5 HOH E 1 205 4 HOH TIP . 
MA 5 HOH E 2 206 5 HOH TIP . 
MA 5 HOH E 3 207 13 HOH TIP . 
NA 5 HOH F 1 205 8 HOH TIP . 
NA 5 HOH F 2 206 10 HOH TIP . 
NA 5 HOH F 3 207 11 HOH TIP . 
OA 5 HOH H 1 205 6 HOH TIP . 
OA 5 HOH H 2 206 15 HOH TIP . 
PA 5 HOH I 1 205 3 HOH TIP . 
PA 5 HOH I 2 206 12 HOH TIP . 
QA 5 HOH J 1 205 2 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . T 4 8.662 -9.838 -17.147 1 86.51 ? C1 NAG 901 C 1 
HETATM 2 C C2 NAG . . . T 4 8.402 -9.292 -18.558 1 88.82 ? C2 NAG 901 C 1 
HETATM 3 C C3 NAG . . . T 4 8.233 -10.534 -19.438 1 88.13 ? C3 NAG 901 C 1 
HETATM 4 C C4 NAG . . . T 4 9.501 -11.399 -19.386 1 87.18 ? C4 NAG 901 C 1 
HETATM 5 C C5 NAG . . . T 4 9.923 -11.703 -17.939 1 86.15 ? C5 NAG 901 C 1 
HETATM 6 C C6 NAG . . . T 4 11.311 -12.297 -17.936 1 88.78 ? C6 NAG 901 C 1 
HETATM 7 C C7 NAG . . . T 4 6.367 -8.291 -17.664 1 90.81 ? C7 NAG 901 C 1 
HETATM 8 C C8 NAG . . . T 4 5.985 -6.863 -17.267 1 89.09 ? C8 NAG 901 C 1 
HETATM 9 N N2 NAG . . . T 4 7.236 -8.425 -18.663 1 88.05 ? N2 NAG 901 C 1 
HETATM 10 O O3 NAG . . . T 4 7.965 -10.148 -20.776 1 94.43 ? O3 NAG 901 C 1 
HETATM 11 O O4 NAG . . . T 4 9.286 -12.626 -20.081 1 87.12 ? O4 NAG 901 C 1 
HETATM 12 O O5 NAG . . . T 4 9.941 -10.493 -17.122 1 87.04 ? O5 NAG 901 C 1 
HETATM 13 O O6 NAG . . . T 4 11.436 -13.288 -18.955 1 92.57 ? O6 NAG 901 C 1 
HETATM 14 O O7 NAG . . . T 4 5.876 -9.255 -17.066 1 89.51 ? O7 NAG 901 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#