data_3SQE # _model_server_result.job_id NOhT2qhiC3AT85KR8U6lxA _model_server_result.datetime_utc '2024-12-27 01:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3SQE # _exptl.entry_id 3SQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.24 _cell.angle_gamma 90 _cell.entry_id 3SQE _cell.length_a 44.378 _cell.length_b 58.055 _cell.length_c 52.88 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 E CYS 1 1_555 A SG CYS 150 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 59 E CYS 42 1_555 A SG CYS 75 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 204 E CYS 168 1_555 A SG CYS 218 E CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 A SG CYS 204 E CYS 168 1_555 A SG CYS 218 E CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 232 E CYS 191 1_555 A SG CYS 262 E CYS 220 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 232 E CYS 191 1_555 A SG CYS 262 E CYS 220 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3SQE _atom_sites.fract_transf_matrix[1][1] 0.022534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003265 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL E 1 301 301 GOL GOL . C 2 GOL E 1 302 302 GOL GOL . D 3 HOH E 1 248 1 HOH HOH . D 3 HOH E 2 249 2 HOH HOH . D 3 HOH E 3 250 3 HOH HOH . D 3 HOH E 4 251 4 HOH HOH . D 3 HOH E 5 252 5 HOH HOH . D 3 HOH E 6 253 6 HOH HOH . D 3 HOH E 7 254 7 HOH HOH . D 3 HOH E 8 255 8 HOH HOH . D 3 HOH E 9 256 9 HOH HOH . D 3 HOH E 10 257 10 HOH HOH . D 3 HOH E 11 258 11 HOH HOH . D 3 HOH E 12 259 12 HOH HOH . D 3 HOH E 13 260 13 HOH HOH . D 3 HOH E 14 261 14 HOH HOH . D 3 HOH E 15 262 15 HOH HOH . D 3 HOH E 16 263 16 HOH HOH . D 3 HOH E 17 264 17 HOH HOH . D 3 HOH E 18 265 18 HOH HOH . D 3 HOH E 19 266 19 HOH HOH . D 3 HOH E 20 267 20 HOH HOH . D 3 HOH E 21 268 21 HOH HOH . D 3 HOH E 22 269 22 HOH HOH . D 3 HOH E 23 270 23 HOH HOH . D 3 HOH E 24 271 24 HOH HOH . D 3 HOH E 25 272 25 HOH HOH . D 3 HOH E 26 273 26 HOH HOH . D 3 HOH E 27 274 27 HOH HOH . D 3 HOH E 28 275 28 HOH HOH . D 3 HOH E 29 276 29 HOH HOH . D 3 HOH E 30 277 30 HOH HOH . D 3 HOH E 31 278 31 HOH HOH . D 3 HOH E 32 279 32 HOH HOH . D 3 HOH E 33 280 33 HOH HOH . D 3 HOH E 34 281 34 HOH HOH . D 3 HOH E 35 282 35 HOH HOH . D 3 HOH E 36 283 36 HOH HOH . D 3 HOH E 37 284 37 HOH HOH . D 3 HOH E 38 285 38 HOH HOH . D 3 HOH E 39 286 39 HOH HOH . D 3 HOH E 40 287 40 HOH HOH . D 3 HOH E 41 288 41 HOH HOH . D 3 HOH E 42 289 42 HOH HOH . D 3 HOH E 43 290 43 HOH HOH . D 3 HOH E 44 291 44 HOH HOH . D 3 HOH E 45 292 45 HOH HOH . D 3 HOH E 46 293 46 HOH HOH . D 3 HOH E 47 294 47 HOH HOH . D 3 HOH E 48 295 48 HOH HOH . D 3 HOH E 49 296 49 HOH HOH . D 3 HOH E 50 297 50 HOH HOH . D 3 HOH E 51 298 51 HOH HOH . D 3 HOH E 52 299 52 HOH HOH . D 3 HOH E 53 300 53 HOH HOH . D 3 HOH E 54 303 54 HOH HOH . D 3 HOH E 55 304 55 HOH HOH . D 3 HOH E 56 305 56 HOH HOH . D 3 HOH E 57 306 57 HOH HOH . D 3 HOH E 58 307 58 HOH HOH . D 3 HOH E 59 308 59 HOH HOH . D 3 HOH E 60 309 60 HOH HOH . D 3 HOH E 61 310 61 HOH HOH . D 3 HOH E 62 311 62 HOH HOH . D 3 HOH E 63 312 63 HOH HOH . D 3 HOH E 64 313 64 HOH HOH . D 3 HOH E 65 314 65 HOH HOH . D 3 HOH E 66 315 66 HOH HOH . D 3 HOH E 67 316 67 HOH HOH . D 3 HOH E 68 317 68 HOH HOH . D 3 HOH E 69 318 69 HOH HOH . D 3 HOH E 70 319 70 HOH HOH . D 3 HOH E 71 320 71 HOH HOH . D 3 HOH E 72 321 72 HOH HOH . D 3 HOH E 73 322 73 HOH HOH . D 3 HOH E 74 323 74 HOH HOH . D 3 HOH E 75 324 75 HOH HOH . D 3 HOH E 76 325 76 HOH HOH . D 3 HOH E 77 326 77 HOH HOH . D 3 HOH E 78 327 78 HOH HOH . D 3 HOH E 79 328 79 HOH HOH . D 3 HOH E 80 329 80 HOH HOH . D 3 HOH E 81 330 81 HOH HOH . D 3 HOH E 82 331 82 HOH HOH . D 3 HOH E 83 332 83 HOH HOH . D 3 HOH E 84 333 84 HOH HOH . D 3 HOH E 85 334 85 HOH HOH . D 3 HOH E 86 335 86 HOH HOH . D 3 HOH E 87 336 87 HOH HOH . D 3 HOH E 88 337 88 HOH HOH . D 3 HOH E 89 338 89 HOH HOH . D 3 HOH E 90 339 90 HOH HOH . D 3 HOH E 91 340 91 HOH HOH . D 3 HOH E 92 341 92 HOH HOH . D 3 HOH E 93 342 93 HOH HOH . D 3 HOH E 94 343 94 HOH HOH . D 3 HOH E 95 344 95 HOH HOH . D 3 HOH E 96 345 96 HOH HOH . D 3 HOH E 97 346 97 HOH HOH . D 3 HOH E 98 347 98 HOH HOH . D 3 HOH E 99 348 99 HOH HOH . D 3 HOH E 100 349 100 HOH HOH . D 3 HOH E 101 350 101 HOH HOH . D 3 HOH E 102 351 102 HOH HOH . D 3 HOH E 103 352 103 HOH HOH . D 3 HOH E 104 353 104 HOH HOH . D 3 HOH E 105 354 105 HOH HOH . D 3 HOH E 106 355 106 HOH HOH . D 3 HOH E 107 356 107 HOH HOH . D 3 HOH E 108 357 108 HOH HOH . D 3 HOH E 109 358 109 HOH HOH . D 3 HOH E 110 359 110 HOH HOH . D 3 HOH E 111 360 111 HOH HOH . D 3 HOH E 112 361 112 HOH HOH . D 3 HOH E 113 362 113 HOH HOH . D 3 HOH E 114 363 114 HOH HOH . D 3 HOH E 115 364 115 HOH HOH . D 3 HOH E 116 365 116 HOH HOH . D 3 HOH E 117 366 117 HOH HOH . D 3 HOH E 118 367 118 HOH HOH . D 3 HOH E 119 368 119 HOH HOH . D 3 HOH E 120 369 120 HOH HOH . D 3 HOH E 121 370 121 HOH HOH . D 3 HOH E 122 371 122 HOH HOH . D 3 HOH E 123 372 123 HOH HOH . D 3 HOH E 124 373 124 HOH HOH . D 3 HOH E 125 374 125 HOH HOH . D 3 HOH E 126 375 126 HOH HOH . D 3 HOH E 127 376 127 HOH HOH . D 3 HOH E 128 377 128 HOH HOH . D 3 HOH E 129 378 129 HOH HOH . D 3 HOH E 130 379 130 HOH HOH . D 3 HOH E 131 380 131 HOH HOH . D 3 HOH E 132 381 132 HOH HOH . D 3 HOH E 133 382 133 HOH HOH . D 3 HOH E 134 383 134 HOH HOH . D 3 HOH E 135 384 135 HOH HOH . D 3 HOH E 136 385 136 HOH HOH . D 3 HOH E 137 386 137 HOH HOH . D 3 HOH E 138 387 138 HOH HOH . D 3 HOH E 139 388 139 HOH HOH . D 3 HOH E 140 389 140 HOH HOH . D 3 HOH E 141 390 141 HOH HOH . D 3 HOH E 142 391 142 HOH HOH . D 3 HOH E 143 392 143 HOH HOH . D 3 HOH E 144 393 144 HOH HOH . D 3 HOH E 145 394 145 HOH HOH . D 3 HOH E 146 395 146 HOH HOH . D 3 HOH E 147 396 147 HOH HOH . D 3 HOH E 148 397 148 HOH HOH . D 3 HOH E 149 398 149 HOH HOH . D 3 HOH E 150 399 150 HOH HOH . D 3 HOH E 151 400 151 HOH HOH . D 3 HOH E 152 401 152 HOH HOH . D 3 HOH E 153 402 153 HOH HOH . D 3 HOH E 154 403 154 HOH HOH . D 3 HOH E 155 404 155 HOH HOH . D 3 HOH E 156 405 156 HOH HOH . D 3 HOH E 157 406 157 HOH HOH . D 3 HOH E 158 407 158 HOH HOH . D 3 HOH E 159 408 159 HOH HOH . D 3 HOH E 160 409 160 HOH HOH . D 3 HOH E 161 410 161 HOH HOH . D 3 HOH E 162 411 162 HOH HOH . D 3 HOH E 163 412 163 HOH HOH . D 3 HOH E 164 413 164 HOH HOH . D 3 HOH E 165 414 165 HOH HOH . D 3 HOH E 166 415 166 HOH HOH . D 3 HOH E 167 416 167 HOH HOH . D 3 HOH E 168 417 168 HOH HOH . D 3 HOH E 169 418 169 HOH HOH . D 3 HOH E 170 419 170 HOH HOH . D 3 HOH E 171 420 171 HOH HOH . D 3 HOH E 172 421 172 HOH HOH . D 3 HOH E 173 422 173 HOH HOH . D 3 HOH E 174 423 174 HOH HOH . D 3 HOH E 175 424 175 HOH HOH . D 3 HOH E 176 425 176 HOH HOH . D 3 HOH E 177 426 177 HOH HOH . D 3 HOH E 178 427 178 HOH HOH . D 3 HOH E 179 428 179 HOH HOH . D 3 HOH E 180 429 180 HOH HOH . D 3 HOH E 181 430 181 HOH HOH . D 3 HOH E 182 431 182 HOH HOH . D 3 HOH E 183 432 183 HOH HOH . D 3 HOH E 184 433 184 HOH HOH . D 3 HOH E 185 434 185 HOH HOH . D 3 HOH E 186 435 186 HOH HOH . D 3 HOH E 187 436 187 HOH HOH . D 3 HOH E 188 437 188 HOH HOH . D 3 HOH E 189 438 189 HOH HOH . D 3 HOH E 190 439 190 HOH HOH . D 3 HOH E 191 440 191 HOH HOH . D 3 HOH E 192 441 192 HOH HOH . D 3 HOH E 193 442 193 HOH HOH . D 3 HOH E 194 443 194 HOH HOH . D 3 HOH E 195 444 195 HOH HOH . D 3 HOH E 196 445 196 HOH HOH . D 3 HOH E 197 446 197 HOH HOH . D 3 HOH E 198 447 198 HOH HOH . D 3 HOH E 199 448 199 HOH HOH . D 3 HOH E 200 449 200 HOH HOH . D 3 HOH E 201 450 201 HOH HOH . D 3 HOH E 202 451 202 HOH HOH . D 3 HOH E 203 452 203 HOH HOH . D 3 HOH E 204 453 204 HOH HOH . D 3 HOH E 205 454 205 HOH HOH . D 3 HOH E 206 455 206 HOH HOH . D 3 HOH E 207 456 207 HOH HOH . D 3 HOH E 208 457 208 HOH HOH . D 3 HOH E 209 458 209 HOH HOH . D 3 HOH E 210 459 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 5.769 10.342 26.231 1 30.76 ? C1 GOL 301 E 1 HETATM 2 O O1 GOL . . . B 2 7.146 10.265 25.954 1 35.51 ? O1 GOL 301 E 1 HETATM 3 C C2 GOL . . . B 2 5.591 9.962 27.683 1 29.25 ? C2 GOL 301 E 1 HETATM 4 O O2 GOL . . . B 2 6.024 11.076 28.429 1 27.95 ? O2 GOL 301 E 1 HETATM 5 C C3 GOL . . . B 2 6.408 8.72 28.04 1 28.09 ? C3 GOL 301 E 1 HETATM 6 O O3 GOL . . . B 2 5.781 7.523 27.593 1 24.64 ? O3 GOL 301 E 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 571 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #