data_3SQY
#
_model_server_result.job_id            In1M80IHekGx5ZNu795tUA 
_model_server_result.datetime_utc      '2024-12-01 01:22:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sqy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":168}' 
#
_entry.id    3SQY 
#
_exptl.entry_id    3SQY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SQY 
_cell.length_a            79.393 
_cell.length_b            79.393 
_cell.length_c            107.979 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SQY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 224 n n 
PA O2A NAP sing 225 n n 
PA O5B NAP sing 226 n n 
PA O3 NAP sing 227 n n 
O2A HOA2 NAP sing 228 n n 
O5B C5B NAP sing 229 n n 
C5B C4B NAP sing 230 n n 
C5B H51A NAP sing 231 n n 
C5B H52A NAP sing 232 n n 
C4B O4B NAP sing 233 n n 
C4B C3B NAP sing 234 n n 
C4B H4B NAP sing 235 n n 
O4B C1B NAP sing 236 n n 
C3B O3B NAP sing 237 n n 
C3B C2B NAP sing 238 n n 
C3B H3B NAP sing 239 n n 
O3B HO3A NAP sing 240 n n 
C2B O2B NAP sing 241 n n 
C2B C1B NAP sing 242 n n 
C2B H2B NAP sing 243 n n 
O2B P2B NAP sing 244 n n 
C1B N9A NAP sing 245 n n 
C1B H1B NAP sing 246 n n 
N9A C8A NAP sing 247 n y 
N9A C4A NAP sing 248 n y 
C8A N7A NAP doub 249 n y 
C8A H8A NAP sing 250 n n 
N7A C5A NAP sing 251 n y 
C5A C6A NAP sing 252 n y 
C5A C4A NAP doub 253 n y 
C6A N6A NAP sing 254 n n 
C6A N1A NAP doub 255 n y 
N6A H61A NAP sing 256 n n 
N6A H62A NAP sing 257 n n 
N1A C2A NAP sing 258 n y 
C2A N3A NAP doub 259 n y 
C2A H2A NAP sing 260 n n 
N3A C4A NAP sing 261 n y 
O3 PN NAP sing 262 n n 
PN O1N NAP doub 263 n n 
PN O2N NAP sing 264 n n 
PN O5D NAP sing 265 n n 
O5D C5D NAP sing 266 n n 
C5D C4D NAP sing 267 n n 
C5D H51N NAP sing 268 n n 
C5D H52N NAP sing 269 n n 
C4D O4D NAP sing 270 n n 
C4D C3D NAP sing 271 n n 
C4D H4D NAP sing 272 n n 
O4D C1D NAP sing 273 n n 
C3D O3D NAP sing 274 n n 
C3D C2D NAP sing 275 n n 
C3D H3D NAP sing 276 n n 
O3D HO3N NAP sing 277 n n 
C2D O2D NAP sing 278 n n 
C2D C1D NAP sing 279 n n 
C2D H2D NAP sing 280 n n 
O2D HO2N NAP sing 281 n n 
C1D N1N NAP sing 282 n n 
C1D H1D NAP sing 283 n n 
N1N C2N NAP sing 284 n y 
N1N C6N NAP doub 285 n y 
C2N C3N NAP doub 286 n y 
C2N H2N NAP sing 287 n n 
C3N C7N NAP sing 288 n n 
C3N C4N NAP sing 289 n y 
C7N O7N NAP doub 290 n n 
C7N N7N NAP sing 291 n n 
N7N H71N NAP sing 292 n n 
N7N H72N NAP sing 293 n n 
C4N C5N NAP doub 294 n y 
C4N H4N NAP sing 295 n n 
C5N C6N NAP sing 296 n y 
C5N H5N NAP sing 297 n n 
C6N H6N NAP sing 298 n n 
P2B O1X NAP doub 299 n n 
P2B O2X NAP sing 300 n n 
P2B O3X NAP sing 301 n n 
O2X HOP2 NAP sing 302 n n 
O3X HOP3 NAP sing 303 n n 
#
_atom_sites.entry_id                     3SQY 
_atom_sites.fract_transf_matrix[1][1]    0.012596 
_atom_sites.fract_transf_matrix[1][2]    0.007272 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 168 160 NAP NAP . 
C 3 Q11 X 1 169 159 Q11 Q11 . 
D 4 HOH X 1 170 1 HOH HOH . 
D 4 HOH X 2 171 2 HOH HOH . 
D 4 HOH X 3 172 4 HOH HOH . 
D 4 HOH X 4 173 5 HOH HOH . 
D 4 HOH X 5 174 6 HOH HOH . 
D 4 HOH X 6 175 7 HOH HOH . 
D 4 HOH X 7 176 8 HOH HOH . 
D 4 HOH X 8 177 9 HOH HOH . 
D 4 HOH X 9 178 10 HOH HOH . 
D 4 HOH X 10 179 12 HOH HOH . 
D 4 HOH X 11 180 13 HOH HOH . 
D 4 HOH X 12 181 14 HOH HOH . 
D 4 HOH X 13 182 15 HOH HOH . 
D 4 HOH X 14 183 16 HOH HOH . 
D 4 HOH X 15 184 17 HOH HOH . 
D 4 HOH X 16 185 18 HOH HOH . 
D 4 HOH X 17 186 19 HOH HOH . 
D 4 HOH X 18 187 20 HOH HOH . 
D 4 HOH X 19 188 21 HOH HOH . 
D 4 HOH X 20 189 22 HOH HOH . 
D 4 HOH X 21 190 23 HOH HOH . 
D 4 HOH X 22 191 24 HOH HOH . 
D 4 HOH X 23 192 25 HOH HOH . 
D 4 HOH X 24 193 26 HOH HOH . 
D 4 HOH X 25 194 27 HOH HOH . 
D 4 HOH X 26 195 28 HOH HOH . 
D 4 HOH X 27 196 29 HOH HOH . 
D 4 HOH X 28 197 30 HOH HOH . 
D 4 HOH X 29 198 31 HOH HOH . 
D 4 HOH X 30 199 32 HOH HOH . 
D 4 HOH X 31 200 33 HOH HOH . 
D 4 HOH X 32 201 34 HOH HOH . 
D 4 HOH X 33 202 35 HOH HOH . 
D 4 HOH X 34 203 36 HOH HOH . 
D 4 HOH X 35 204 37 HOH HOH . 
D 4 HOH X 36 205 38 HOH HOH . 
D 4 HOH X 37 206 39 HOH HOH . 
D 4 HOH X 38 207 40 HOH HOH . 
D 4 HOH X 39 208 41 HOH HOH . 
D 4 HOH X 40 209 42 HOH HOH . 
D 4 HOH X 41 210 43 HOH HOH . 
D 4 HOH X 42 211 44 HOH HOH . 
D 4 HOH X 43 212 45 HOH HOH . 
D 4 HOH X 44 213 47 HOH HOH . 
D 4 HOH X 45 214 48 HOH HOH . 
D 4 HOH X 46 215 49 HOH HOH . 
D 4 HOH X 47 216 50 HOH HOH . 
D 4 HOH X 48 217 51 HOH HOH . 
D 4 HOH X 49 218 52 HOH HOH . 
D 4 HOH X 50 219 54 HOH HOH . 
D 4 HOH X 51 220 55 HOH HOH . 
D 4 HOH X 52 221 56 HOH HOH . 
D 4 HOH X 53 222 57 HOH HOH . 
D 4 HOH X 54 223 58 HOH HOH . 
D 4 HOH X 55 224 59 HOH HOH . 
D 4 HOH X 56 225 60 HOH HOH . 
D 4 HOH X 57 226 61 HOH HOH . 
D 4 HOH X 58 227 62 HOH HOH . 
D 4 HOH X 59 228 63 HOH HOH . 
D 4 HOH X 60 229 64 HOH HOH . 
D 4 HOH X 61 230 66 HOH HOH . 
D 4 HOH X 62 231 68 HOH HOH . 
D 4 HOH X 63 232 70 HOH HOH . 
D 4 HOH X 64 233 71 HOH HOH . 
D 4 HOH X 65 234 74 HOH HOH . 
D 4 HOH X 66 235 75 HOH HOH . 
D 4 HOH X 67 236 76 HOH HOH . 
D 4 HOH X 68 237 77 HOH HOH . 
D 4 HOH X 69 238 78 HOH HOH . 
D 4 HOH X 70 239 79 HOH HOH . 
D 4 HOH X 71 240 80 HOH HOH . 
D 4 HOH X 72 241 81 HOH HOH . 
D 4 HOH X 73 242 82 HOH HOH . 
D 4 HOH X 74 243 83 HOH HOH . 
D 4 HOH X 75 244 84 HOH HOH . 
D 4 HOH X 76 245 85 HOH HOH . 
D 4 HOH X 77 246 87 HOH HOH . 
D 4 HOH X 78 247 88 HOH HOH . 
D 4 HOH X 79 248 89 HOH HOH . 
D 4 HOH X 80 249 90 HOH HOH . 
D 4 HOH X 81 250 92 HOH HOH . 
D 4 HOH X 82 251 94 HOH HOH . 
D 4 HOH X 83 252 97 HOH HOH . 
D 4 HOH X 84 253 100 HOH HOH . 
D 4 HOH X 85 254 101 HOH HOH . 
D 4 HOH X 86 255 102 HOH HOH . 
D 4 HOH X 87 256 105 HOH HOH . 
D 4 HOH X 88 257 106 HOH HOH . 
D 4 HOH X 89 258 108 HOH HOH . 
D 4 HOH X 90 259 109 HOH HOH . 
D 4 HOH X 91 260 111 HOH HOH . 
D 4 HOH X 92 261 112 HOH HOH . 
D 4 HOH X 93 262 116 HOH HOH . 
D 4 HOH X 94 263 117 HOH HOH . 
D 4 HOH X 95 264 118 HOH HOH . 
D 4 HOH X 96 265 119 HOH HOH . 
D 4 HOH X 97 266 120 HOH HOH . 
D 4 HOH X 98 267 121 HOH HOH . 
D 4 HOH X 99 268 122 HOH HOH . 
D 4 HOH X 100 269 124 HOH HOH . 
D 4 HOH X 101 270 126 HOH HOH . 
D 4 HOH X 102 271 127 HOH HOH . 
D 4 HOH X 103 272 130 HOH HOH . 
D 4 HOH X 104 273 131 HOH HOH . 
D 4 HOH X 105 274 132 HOH HOH . 
D 4 HOH X 106 275 133 HOH HOH . 
D 4 HOH X 107 276 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 6.608 31.649 -6.519 1 11.21 ? PA NAP 168 X 1 
HETATM 2 O O1A NAP . . . B 2 6.79 30.388 -5.762 1 11.75 ? O1A NAP 168 X 1 
HETATM 3 O O2A NAP . . . B 2 5.314 32.344 -6.362 1 11.77 ? O2A NAP 168 X 1 
HETATM 4 O O5B NAP . . . B 2 7.737 32.738 -6.164 1 11.17 ? O5B NAP 168 X 1 
HETATM 5 C C5B NAP . . . B 2 9.099 32.385 -6.309 1 12.34 ? C5B NAP 168 X 1 
HETATM 6 C C4B NAP . . . B 2 9.904 33.416 -5.551 1 13.16 ? C4B NAP 168 X 1 
HETATM 7 O O4B NAP . . . B 2 9.683 33.236 -4.16 1 13.28 ? O4B NAP 168 X 1 
HETATM 8 C C3B NAP . . . B 2 11.405 33.279 -5.717 1 13.93 ? C3B NAP 168 X 1 
HETATM 9 O O3B NAP . . . B 2 11.864 33.79 -6.945 1 14.16 ? O3B NAP 168 X 1 
HETATM 10 C C2B NAP . . . B 2 11.865 34.051 -4.493 1 13.26 ? C2B NAP 168 X 1 
HETATM 11 O O2B NAP . . . B 2 11.651 35.44 -4.65 1 13.49 ? O2B NAP 168 X 1 
HETATM 12 C C1B NAP . . . B 2 10.856 33.586 -3.456 1 14.67 ? C1B NAP 168 X 1 
HETATM 13 N N9A NAP . . . B 2 11.337 32.433 -2.687 1 14.97 ? N9A NAP 168 X 1 
HETATM 14 C C8A NAP . . . B 2 10.914 31.135 -2.75 1 15.11 ? C8A NAP 168 X 1 
HETATM 15 N N7A NAP . . . B 2 11.615 30.398 -1.848 1 16.63 ? N7A NAP 168 X 1 
HETATM 16 C C5A NAP . . . B 2 12.48 31.23 -1.203 1 16.68 ? C5A NAP 168 X 1 
HETATM 17 C C6A NAP . . . B 2 13.432 31.043 -0.192 1 18.35 ? C6A NAP 168 X 1 
HETATM 18 N N6A NAP . . . B 2 13.651 29.85 0.356 1 19.41 ? N6A NAP 168 X 1 
HETATM 19 N N1A NAP . . . B 2 14.157 32.133 0.242 1 18.88 ? N1A NAP 168 X 1 
HETATM 20 C C2A NAP . . . B 2 13.952 33.382 -0.292 1 18.99 ? C2A NAP 168 X 1 
HETATM 21 N N3A NAP . . . B 2 13.015 33.569 -1.277 1 17.05 ? N3A NAP 168 X 1 
HETATM 22 C C4A NAP . . . B 2 12.304 32.51 -1.729 1 15.91 ? C4A NAP 168 X 1 
HETATM 23 O O3 NAP . . . B 2 6.915 31.435 -8.081 1 11.12 ? O3 NAP 168 X 1 
HETATM 24 P PN NAP . . . B 2 6.793 30.192 -9.083 1 10.81 ? PN NAP 168 X 1 
HETATM 25 O O1N NAP . . . B 2 7.41 28.993 -8.498 1 11.26 ? O1N NAP 168 X 1 
HETATM 26 O O2N NAP . . . B 2 7.249 30.688 -10.403 1 10.65 ? O2N NAP 168 X 1 
HETATM 27 O O5D NAP . . . B 2 5.203 29.941 -9.107 1 10.55 ? O5D NAP 168 X 1 
HETATM 28 C C5D NAP . . . B 2 4.361 30.926 -9.673 1 9.81 ? C5D NAP 168 X 1 
HETATM 29 C C4D NAP . . . B 2 3.253 30.248 -10.469 1 9.41 ? C4D NAP 168 X 1 
HETATM 30 O O4D NAP . . . B 2 2.372 29.535 -9.598 1 9.65 ? O4D NAP 168 X 1 
HETATM 31 C C3D NAP . . . B 2 2.384 31.233 -11.248 1 9.72 ? C3D NAP 168 X 1 
HETATM 32 O O3D NAP . . . B 2 2.032 30.728 -12.526 1 10.48 ? O3D NAP 168 X 1 
HETATM 33 C C2D NAP . . . B 2 1.129 31.332 -10.402 1 10.08 ? C2D NAP 168 X 1 
HETATM 34 O O2D NAP . . . B 2 0.001 31.699 -11.166 1 10.94 ? O2D NAP 168 X 1 
HETATM 35 C C1D NAP . . . B 2 1.039 29.907 -9.893 1 9.95 ? C1D NAP 168 X 1 
HETATM 36 N N1N NAP . . . B 2 0.265 29.718 -8.674 1 9.75 ? N1N NAP 168 X 1 
HETATM 37 C C2N NAP . . . B 2 -0.711 28.775 -8.707 1 9.86 ? C2N NAP 168 X 1 
HETATM 38 C C3N NAP . . . B 2 -1.464 28.505 -7.584 1 8.88 ? C3N NAP 168 X 1 
HETATM 39 C C7N NAP . . . B 2 -2.529 27.476 -7.7 1 11.31 ? C7N NAP 168 X 1 
HETATM 40 O O7N NAP . . . B 2 -3.016 26.993 -6.522 1 10.95 ? O7N NAP 168 X 1 
HETATM 41 N N7N NAP . . . B 2 -2.985 27.008 -8.861 1 10.1 ? N7N NAP 168 X 1 
HETATM 42 C C4N NAP . . . B 2 -1.227 29.206 -6.384 1 10.53 ? C4N NAP 168 X 1 
HETATM 43 C C5N NAP . . . B 2 -0.212 30.184 -6.386 1 10.16 ? C5N NAP 168 X 1 
HETATM 44 C C6N NAP . . . B 2 0.537 30.435 -7.529 1 10.5 ? C6N NAP 168 X 1 
HETATM 45 P P2B NAP . . . B 2 12.831 36.445 -5.114 1 15.06 ? P2B NAP 168 X 1 
HETATM 46 O O1X NAP . . . B 2 12.223 37.82 -5.041 1 15.54 ? O1X NAP 168 X 1 
HETATM 47 O O2X NAP . . . B 2 13.973 36.234 -4.14 1 15.53 ? O2X NAP 168 X 1 
HETATM 48 O O3X NAP . . . B 2 13.223 36.058 -6.518 1 16.25 ? O3X NAP 168 X 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           48 
#