data_3SR4
#
_model_server_result.job_id            E9tUm-Ji40YxfOEv2yraLg 
_model_server_result.datetime_utc      '2024-11-22 08:30:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sr4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":417}' 
#
_entry.id    3SR4 
#
_exptl.entry_id    3SR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SR4 
_cell.length_a            152.753 
_cell.length_b            152.753 
_cell.length_c            50.889 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                TT8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     S-(N6-Methyladenosyl)-L-homocysteine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O TT8 doub 357 n n 
C CA TT8 sing 358 n n 
C OXT TT8 sing 359 n n 
N CA TT8 sing 360 n n 
N HN TT8 sing 361 n n 
N HNA TT8 sing 362 n n 
C1 N6 TT8 sing 363 n n 
C1 H1 TT8 sing 364 n n 
C1 H1A TT8 sing 365 n n 
C1 H1B TT8 sing 366 n n 
N1 C2 TT8 doub 367 n y 
N1 C6 TT8 sing 368 n y 
C2 N3 TT8 sing 369 n y 
C2 H2 TT8 sing 370 n n 
N3 C4 TT8 doub 371 n y 
C4 C5 TT8 sing 372 n y 
C4 N9 TT8 sing 373 n y 
C5 C6 TT8 doub 374 n y 
C5 N7 TT8 sing 375 n y 
C6 N6 TT8 sing 376 n n 
N6 HN6 TT8 sing 377 n n 
N7 C8 TT8 doub 378 n y 
C8 N9 TT8 sing 379 n y 
C8 H8 TT8 sing 380 n n 
N9 C1' TT8 sing 381 n n 
CA CB TT8 sing 382 n n 
CA HA TT8 sing 383 n n 
CB CG TT8 sing 384 n n 
CB HB TT8 sing 385 n n 
CB HBA TT8 sing 386 n n 
SD CG TT8 sing 387 n n 
SD C5' TT8 sing 388 n n 
CG HG TT8 sing 389 n n 
CG HGA TT8 sing 390 n n 
C1' C2' TT8 sing 391 n n 
C1' O4' TT8 sing 392 n n 
C1' H1' TT8 sing 393 n n 
C2' O2' TT8 sing 394 n n 
C2' C3' TT8 sing 395 n n 
C2' H2' TT8 sing 396 n n 
O2' HO2' TT8 sing 397 n n 
C3' O3' TT8 sing 398 n n 
C3' C4' TT8 sing 399 n n 
C3' H3' TT8 sing 400 n n 
O3' HO3' TT8 sing 401 n n 
C4' O4' TT8 sing 402 n n 
C4' C5' TT8 sing 403 n n 
C4' H4' TT8 sing 404 n n 
C5' H5' TT8 sing 405 n n 
C5' "H5'A" TT8 sing 406 n n 
OXT H22 TT8 sing 407 n n 
#
_atom_sites.entry_id                     3SR4 
_atom_sites.fract_transf_matrix[1][1]    0.006547 
_atom_sites.fract_transf_matrix[1][2]    0.00378 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007559 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TT8 A 1 417 417 TT8 TT8 . 
C 3 GOL A 1 500 500 GOL GOL . 
D 4 ACT A 1 600 600 ACT ACT . 
E 5 SO4 A 1 700 700 SO4 SO4 . 
F 6 HOH A 1 352 1 HOH HOH . 
F 6 HOH A 2 353 2 HOH HOH . 
F 6 HOH A 3 354 3 HOH HOH . 
F 6 HOH A 4 355 4 HOH HOH . 
F 6 HOH A 5 356 5 HOH HOH . 
F 6 HOH A 6 357 6 HOH HOH . 
F 6 HOH A 7 358 7 HOH HOH . 
F 6 HOH A 8 359 8 HOH HOH . 
F 6 HOH A 9 360 9 HOH HOH . 
F 6 HOH A 10 361 10 HOH HOH . 
F 6 HOH A 11 362 11 HOH HOH . 
F 6 HOH A 12 363 12 HOH HOH . 
F 6 HOH A 13 364 13 HOH HOH . 
F 6 HOH A 14 365 14 HOH HOH . 
F 6 HOH A 15 366 15 HOH HOH . 
F 6 HOH A 16 367 16 HOH HOH . 
F 6 HOH A 17 368 17 HOH HOH . 
F 6 HOH A 18 369 18 HOH HOH . 
F 6 HOH A 19 370 19 HOH HOH . 
F 6 HOH A 20 371 20 HOH HOH . 
F 6 HOH A 21 372 21 HOH HOH . 
F 6 HOH A 22 373 22 HOH HOH . 
F 6 HOH A 23 374 23 HOH HOH . 
F 6 HOH A 24 375 24 HOH HOH . 
F 6 HOH A 25 376 25 HOH HOH . 
F 6 HOH A 26 377 26 HOH HOH . 
F 6 HOH A 27 378 27 HOH HOH . 
F 6 HOH A 28 379 28 HOH HOH . 
F 6 HOH A 29 380 29 HOH HOH . 
F 6 HOH A 30 381 30 HOH HOH . 
F 6 HOH A 31 382 31 HOH HOH . 
F 6 HOH A 32 383 32 HOH HOH . 
F 6 HOH A 33 384 33 HOH HOH . 
F 6 HOH A 34 385 34 HOH HOH . 
F 6 HOH A 35 386 35 HOH HOH . 
F 6 HOH A 36 387 36 HOH HOH . 
F 6 HOH A 37 388 37 HOH HOH . 
F 6 HOH A 38 389 38 HOH HOH . 
F 6 HOH A 39 390 39 HOH HOH . 
F 6 HOH A 40 391 40 HOH HOH . 
F 6 HOH A 41 392 41 HOH HOH . 
F 6 HOH A 42 393 42 HOH HOH . 
F 6 HOH A 43 394 43 HOH HOH . 
F 6 HOH A 44 395 44 HOH HOH . 
F 6 HOH A 45 396 45 HOH HOH . 
F 6 HOH A 46 397 46 HOH HOH . 
F 6 HOH A 47 398 47 HOH HOH . 
F 6 HOH A 48 399 48 HOH HOH . 
F 6 HOH A 49 400 49 HOH HOH . 
F 6 HOH A 50 401 50 HOH HOH . 
F 6 HOH A 51 402 51 HOH HOH . 
F 6 HOH A 52 403 52 HOH HOH . 
F 6 HOH A 53 404 53 HOH HOH . 
F 6 HOH A 54 405 54 HOH HOH . 
F 6 HOH A 55 406 55 HOH HOH . 
F 6 HOH A 56 407 56 HOH HOH . 
F 6 HOH A 57 408 57 HOH HOH . 
F 6 HOH A 58 409 58 HOH HOH . 
F 6 HOH A 59 410 59 HOH HOH . 
F 6 HOH A 60 411 60 HOH HOH . 
F 6 HOH A 61 412 61 HOH HOH . 
F 6 HOH A 62 413 62 HOH HOH . 
F 6 HOH A 63 414 63 HOH HOH . 
F 6 HOH A 64 415 64 HOH HOH . 
F 6 HOH A 65 416 65 HOH HOH . 
F 6 HOH A 66 418 66 HOH HOH . 
F 6 HOH A 67 419 67 HOH HOH . 
F 6 HOH A 68 420 68 HOH HOH . 
F 6 HOH A 69 421 69 HOH HOH . 
F 6 HOH A 70 422 70 HOH HOH . 
F 6 HOH A 71 423 71 HOH HOH . 
F 6 HOH A 72 424 72 HOH HOH . 
F 6 HOH A 73 425 73 HOH HOH . 
F 6 HOH A 74 426 74 HOH HOH . 
F 6 HOH A 75 427 75 HOH HOH . 
F 6 HOH A 76 428 76 HOH HOH . 
F 6 HOH A 77 429 77 HOH HOH . 
F 6 HOH A 78 430 78 HOH HOH . 
F 6 HOH A 79 431 79 HOH HOH . 
F 6 HOH A 80 432 80 HOH HOH . 
F 6 HOH A 81 433 81 HOH HOH . 
F 6 HOH A 82 434 82 HOH HOH . 
F 6 HOH A 83 435 83 HOH HOH . 
F 6 HOH A 84 436 84 HOH HOH . 
F 6 HOH A 85 437 85 HOH HOH . 
F 6 HOH A 86 438 86 HOH HOH . 
F 6 HOH A 87 439 87 HOH HOH . 
F 6 HOH A 88 440 88 HOH HOH . 
F 6 HOH A 89 441 89 HOH HOH . 
F 6 HOH A 90 442 90 HOH HOH . 
F 6 HOH A 91 443 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TT8 . . . B 2 41.941 53.507 0.977 1 47.66 ? C TT8 417 A 1 
HETATM 2 N N TT8 . . . B 2 41.821 51.139 1.604 1 45.34 ? N TT8 417 A 1 
HETATM 3 O O TT8 . . . B 2 42.688 53.112 0.064 1 49.48 ? O TT8 417 A 1 
HETATM 4 C C1 TT8 . . . B 2 47.507 43.517 9.61 1 53.65 ? C1 TT8 417 A 1 
HETATM 5 N N1 TT8 . . . B 2 43.845 43.658 8.614 1 48.71 ? N1 TT8 417 A 1 
HETATM 6 C C2 TT8 . . . B 2 42.805 44.499 8.19 1 49.09 ? C2 TT8 417 A 1 
HETATM 7 N N3 TT8 . . . B 2 43.089 45.858 8.033 1 49.18 ? N3 TT8 417 A 1 
HETATM 8 C C4 TT8 . . . B 2 44.346 46.364 8.282 1 47.91 ? C4 TT8 417 A 1 
HETATM 9 C C5 TT8 . . . B 2 45.393 45.52 8.708 1 46.98 ? C5 TT8 417 A 1 
HETATM 10 C C6 TT8 . . . B 2 45.133 44.138 8.876 1 48.2 ? C6 TT8 417 A 1 
HETATM 11 N N6 TT8 . . . B 2 46.076 43.257 9.276 1 51.98 ? N6 TT8 417 A 1 
HETATM 12 N N7 TT8 . . . B 2 46.492 46.284 8.867 1 47.21 ? N7 TT8 417 A 1 
HETATM 13 C C8 TT8 . . . B 2 46.195 47.565 8.563 1 46.77 ? C8 TT8 417 A 1 
HETATM 14 N N9 TT8 . . . B 2 44.863 47.628 8.197 1 47.76 ? N9 TT8 417 A 1 
HETATM 15 C CA TT8 . . . B 2 41.515 52.53 2.076 1 47.73 ? CA TT8 417 A 1 
HETATM 16 C CB TT8 . . . B 2 42.202 52.807 3.445 1 47.95 ? CB TT8 417 A 1 
HETATM 17 S SD TT8 . . . B 2 44.539 53.004 5.027 1 48.61 ? SD TT8 417 A 1 
HETATM 18 C CG TT8 . . . B 2 43.741 52.67 3.44 1 46.28 ? CG TT8 417 A 1 
HETATM 19 C C1' TT8 . . . B 2 44.096 48.82 7.771 1 49.24 ? C1' TT8 417 A 1 
HETATM 20 C C2' TT8 . . . B 2 44.288 50.015 8.679 1 50.03 ? C2' TT8 417 A 1 
HETATM 21 O O2' TT8 . . . B 2 43.478 49.934 9.824 1 52.26 ? O2' TT8 417 A 1 
HETATM 22 C C3' TT8 . . . B 2 43.924 51.184 7.767 1 50.4 ? C3' TT8 417 A 1 
HETATM 23 O O3' TT8 . . . B 2 42.631 51.714 7.998 1 51.53 ? O3' TT8 417 A 1 
HETATM 24 C C4' TT8 . . . B 2 44.084 50.621 6.356 1 48.67 ? C4' TT8 417 A 1 
HETATM 25 O O4' TT8 . . . B 2 44.519 49.27 6.492 1 49.08 ? O4' TT8 417 A 1 
HETATM 26 C C5' TT8 . . . B 2 45.131 51.373 5.546 1 45.58 ? C5' TT8 417 A 1 
HETATM 27 O OXT TT8 . . . B 2 41.569 54.699 0.984 1 46.66 ? OXT TT8 417 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#