data_3SRA # _model_server_result.job_id 81gLoWteqifN2giVzloMVg _model_server_result.datetime_utc '2024-12-26 20:41:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":20}' # _entry.id 3SRA # _exptl.entry_id 3SRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SRA _cell.length_a 120.168 _cell.length_b 166.622 _cell.length_c 93.746 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 67 1_555 A SG CYS 120 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 217 B CYS 433 1_555 B SG CYS 237 B CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 339 B CYS 555 1_555 B SG CYS 352 B CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 B OG SER 1 B SER 217 1_555 V C1 MYR . B MYR 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3SRA _atom_sites.fract_transf_matrix[1][1] 0.008322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 2 2 EDO EDO . D 3 EDO A 1 3 3 EDO EDO . E 3 EDO A 1 4 4 EDO EDO . F 3 EDO A 1 5 5 EDO EDO . G 3 EDO A 1 7 7 EDO EDO . H 3 EDO A 1 8 8 EDO EDO . I 3 EDO A 1 10 10 EDO EDO . J 3 EDO A 1 11 11 EDO EDO . K 3 EDO A 1 20 20 EDO EDO . L 3 EDO B 1 1 1 EDO EDO . M 3 EDO B 1 12 12 EDO EDO . N 3 EDO B 1 13 13 EDO EDO . O 3 EDO B 1 14 14 EDO EDO . P 3 EDO B 1 15 15 EDO EDO . Q 3 EDO B 1 16 16 EDO EDO . R 3 EDO B 1 17 17 EDO EDO . S 3 EDO B 1 18 18 EDO EDO . T 3 EDO B 1 19 19 EDO EDO . U 3 EDO B 1 21 21 EDO EDO . V 4 MYR B 1 763 1 MYR MYR . W 5 HOH A 1 15 15 HOH HOH . W 5 HOH A 2 16 16 HOH HOH . W 5 HOH A 3 17 17 HOH HOH . W 5 HOH A 4 18 18 HOH HOH . W 5 HOH A 5 22 22 HOH HOH . W 5 HOH A 6 23 23 HOH HOH . W 5 HOH A 7 24 24 HOH HOH . W 5 HOH A 8 28 28 HOH HOH . W 5 HOH A 9 192 3 HOH HOH . W 5 HOH A 10 193 4 HOH HOH . W 5 HOH A 11 194 5 HOH HOH . W 5 HOH A 12 195 195 HOH HOH . W 5 HOH A 13 196 196 HOH HOH . W 5 HOH A 14 197 7 HOH HOH . W 5 HOH A 15 198 11 HOH HOH . W 5 HOH A 16 199 30 HOH HOH . W 5 HOH A 17 200 31 HOH HOH . W 5 HOH A 18 201 32 HOH HOH . W 5 HOH A 19 202 202 HOH HOH . W 5 HOH A 20 203 34 HOH HOH . W 5 HOH A 21 204 41 HOH HOH . W 5 HOH A 22 205 43 HOH HOH . W 5 HOH A 23 206 45 HOH HOH . W 5 HOH A 24 207 49 HOH HOH . W 5 HOH A 25 208 50 HOH HOH . W 5 HOH A 26 209 54 HOH HOH . W 5 HOH A 27 210 55 HOH HOH . W 5 HOH A 28 211 63 HOH HOH . W 5 HOH A 29 212 70 HOH HOH . W 5 HOH A 30 213 80 HOH HOH . W 5 HOH A 31 214 214 HOH HOH . W 5 HOH A 32 215 81 HOH HOH . W 5 HOH A 33 216 89 HOH HOH . W 5 HOH A 34 217 92 HOH HOH . W 5 HOH A 35 218 93 HOH HOH . W 5 HOH A 36 219 99 HOH HOH . W 5 HOH A 37 220 100 HOH HOH . W 5 HOH A 38 221 105 HOH HOH . W 5 HOH A 39 222 112 HOH HOH . W 5 HOH A 40 223 113 HOH HOH . W 5 HOH A 41 224 118 HOH HOH . W 5 HOH A 42 225 119 HOH HOH . W 5 HOH A 43 226 125 HOH HOH . W 5 HOH A 44 227 126 HOH HOH . W 5 HOH A 45 228 136 HOH HOH . W 5 HOH A 46 229 148 HOH HOH . W 5 HOH A 47 230 230 HOH HOH . W 5 HOH A 48 231 151 HOH HOH . W 5 HOH A 49 232 152 HOH HOH . W 5 HOH A 50 233 233 HOH HOH . W 5 HOH A 51 234 156 HOH HOH . W 5 HOH A 52 235 158 HOH HOH . W 5 HOH A 53 236 160 HOH HOH . W 5 HOH A 54 237 162 HOH HOH . W 5 HOH A 55 238 163 HOH HOH . W 5 HOH A 56 239 175 HOH HOH . W 5 HOH A 57 240 179 HOH HOH . W 5 HOH A 58 241 181 HOH HOH . W 5 HOH A 59 281 281 HOH HOH . W 5 HOH A 60 282 282 HOH HOH . W 5 HOH A 61 297 297 HOH HOH . W 5 HOH A 62 307 307 HOH HOH . W 5 HOH A 63 308 308 HOH HOH . W 5 HOH A 64 311 311 HOH HOH . W 5 HOH A 65 312 312 HOH HOH . W 5 HOH A 66 314 314 HOH HOH . W 5 HOH A 67 315 315 HOH HOH . W 5 HOH A 68 316 316 HOH HOH . W 5 HOH A 69 317 317 HOH HOH . W 5 HOH A 70 319 319 HOH HOH . W 5 HOH A 71 320 320 HOH HOH . W 5 HOH A 72 323 323 HOH HOH . W 5 HOH A 73 324 324 HOH HOH . W 5 HOH A 74 325 325 HOH HOH . W 5 HOH A 75 326 326 HOH HOH . W 5 HOH A 76 327 327 HOH HOH . W 5 HOH A 77 330 330 HOH HOH . W 5 HOH A 78 331 331 HOH HOH . W 5 HOH A 79 332 332 HOH HOH . W 5 HOH A 80 333 333 HOH HOH . W 5 HOH A 81 337 337 HOH HOH . W 5 HOH A 82 358 358 HOH HOH . W 5 HOH A 83 364 364 HOH HOH . W 5 HOH A 84 367 367 HOH HOH . X 5 HOH B 1 6 6 HOH HOH . X 5 HOH B 2 10 10 HOH HOH . X 5 HOH B 3 20 20 HOH HOH . X 5 HOH B 4 25 25 HOH HOH . X 5 HOH B 5 26 26 HOH HOH . X 5 HOH B 6 27 27 HOH HOH . X 5 HOH B 7 29 29 HOH HOH . X 5 HOH B 8 33 33 HOH HOH . X 5 HOH B 9 35 35 HOH HOH . X 5 HOH B 10 36 36 HOH HOH . X 5 HOH B 11 37 37 HOH HOH . X 5 HOH B 12 38 38 HOH HOH . X 5 HOH B 13 39 39 HOH HOH . X 5 HOH B 14 42 42 HOH HOH . X 5 HOH B 15 44 44 HOH HOH . X 5 HOH B 16 46 46 HOH HOH . X 5 HOH B 17 47 47 HOH HOH . X 5 HOH B 18 48 48 HOH HOH . X 5 HOH B 19 51 51 HOH HOH . X 5 HOH B 20 52 52 HOH HOH . X 5 HOH B 21 57 57 HOH HOH . X 5 HOH B 22 58 58 HOH HOH . X 5 HOH B 23 59 59 HOH HOH . X 5 HOH B 24 60 60 HOH HOH . X 5 HOH B 25 61 61 HOH HOH . X 5 HOH B 26 62 62 HOH HOH . X 5 HOH B 27 64 64 HOH HOH . X 5 HOH B 28 65 65 HOH HOH . X 5 HOH B 29 66 66 HOH HOH . X 5 HOH B 30 67 67 HOH HOH . X 5 HOH B 31 68 68 HOH HOH . X 5 HOH B 32 69 69 HOH HOH . X 5 HOH B 33 71 71 HOH HOH . X 5 HOH B 34 72 72 HOH HOH . X 5 HOH B 35 73 73 HOH HOH . X 5 HOH B 36 74 74 HOH HOH . X 5 HOH B 37 76 76 HOH HOH . X 5 HOH B 38 77 77 HOH HOH . X 5 HOH B 39 78 78 HOH HOH . X 5 HOH B 40 79 79 HOH HOH . X 5 HOH B 41 83 83 HOH HOH . X 5 HOH B 42 84 84 HOH HOH . X 5 HOH B 43 85 85 HOH HOH . X 5 HOH B 44 86 86 HOH HOH . X 5 HOH B 45 87 87 HOH HOH . X 5 HOH B 46 88 88 HOH HOH . X 5 HOH B 47 90 90 HOH HOH . X 5 HOH B 48 95 95 HOH HOH . X 5 HOH B 49 96 96 HOH HOH . X 5 HOH B 50 97 97 HOH HOH . X 5 HOH B 51 98 98 HOH HOH . X 5 HOH B 52 102 102 HOH HOH . X 5 HOH B 53 103 103 HOH HOH . X 5 HOH B 54 107 107 HOH HOH . X 5 HOH B 55 108 108 HOH HOH . X 5 HOH B 56 109 109 HOH HOH . X 5 HOH B 57 110 110 HOH HOH . X 5 HOH B 58 111 111 HOH HOH . X 5 HOH B 59 114 114 HOH HOH . X 5 HOH B 60 116 116 HOH HOH . X 5 HOH B 61 117 117 HOH HOH . X 5 HOH B 62 120 120 HOH HOH . X 5 HOH B 63 121 121 HOH HOH . X 5 HOH B 64 122 122 HOH HOH . X 5 HOH B 65 123 123 HOH HOH . X 5 HOH B 66 124 124 HOH HOH . X 5 HOH B 67 127 127 HOH HOH . X 5 HOH B 68 129 129 HOH HOH . X 5 HOH B 69 130 130 HOH HOH . X 5 HOH B 70 132 132 HOH HOH . X 5 HOH B 71 133 133 HOH HOH . X 5 HOH B 72 134 134 HOH HOH . X 5 HOH B 73 135 135 HOH HOH . X 5 HOH B 74 137 137 HOH HOH . X 5 HOH B 75 139 139 HOH HOH . X 5 HOH B 76 140 140 HOH HOH . X 5 HOH B 77 141 141 HOH HOH . X 5 HOH B 78 142 142 HOH HOH . X 5 HOH B 79 146 146 HOH HOH . X 5 HOH B 80 147 147 HOH HOH . X 5 HOH B 81 150 150 HOH HOH . X 5 HOH B 82 159 159 HOH HOH . X 5 HOH B 83 161 161 HOH HOH . X 5 HOH B 84 164 164 HOH HOH . X 5 HOH B 85 166 166 HOH HOH . X 5 HOH B 86 167 167 HOH HOH . X 5 HOH B 87 168 168 HOH HOH . X 5 HOH B 88 169 169 HOH HOH . X 5 HOH B 89 170 170 HOH HOH . X 5 HOH B 90 173 173 HOH HOH . X 5 HOH B 91 177 177 HOH HOH . X 5 HOH B 92 178 178 HOH HOH . X 5 HOH B 93 185 185 HOH HOH . X 5 HOH B 94 187 187 HOH HOH . X 5 HOH B 95 190 190 HOH HOH . X 5 HOH B 96 192 192 HOH HOH . X 5 HOH B 97 193 193 HOH HOH . X 5 HOH B 98 204 204 HOH HOH . X 5 HOH B 99 206 206 HOH HOH . X 5 HOH B 100 207 207 HOH HOH . X 5 HOH B 101 208 208 HOH HOH . X 5 HOH B 102 210 210 HOH HOH . X 5 HOH B 103 211 211 HOH HOH . X 5 HOH B 104 764 1 HOH HOH . X 5 HOH B 105 765 13 HOH HOH . X 5 HOH B 106 766 14 HOH HOH . X 5 HOH B 107 767 19 HOH HOH . X 5 HOH B 108 768 21 HOH HOH . X 5 HOH B 109 769 221 HOH HOH . X 5 HOH B 110 770 223 HOH HOH . X 5 HOH B 111 771 225 HOH HOH . X 5 HOH B 112 772 226 HOH HOH . X 5 HOH B 113 773 227 HOH HOH . X 5 HOH B 114 774 232 HOH HOH . X 5 HOH B 115 775 237 HOH HOH . X 5 HOH B 116 776 242 HOH HOH . X 5 HOH B 117 777 250 HOH HOH . X 5 HOH B 118 778 251 HOH HOH . X 5 HOH B 119 779 253 HOH HOH . X 5 HOH B 120 780 254 HOH HOH . X 5 HOH B 121 781 264 HOH HOH . X 5 HOH B 122 782 277 HOH HOH . X 5 HOH B 123 783 292 HOH HOH . X 5 HOH B 124 784 298 HOH HOH . X 5 HOH B 125 785 299 HOH HOH . X 5 HOH B 126 786 301 HOH HOH . X 5 HOH B 127 787 305 HOH HOH . X 5 HOH B 128 788 309 HOH HOH . X 5 HOH B 129 789 310 HOH HOH . X 5 HOH B 130 790 313 HOH HOH . X 5 HOH B 131 791 321 HOH HOH . X 5 HOH B 132 792 328 HOH HOH . X 5 HOH B 133 793 329 HOH HOH . X 5 HOH B 134 794 335 HOH HOH . X 5 HOH B 135 795 336 HOH HOH . X 5 HOH B 136 796 338 HOH HOH . X 5 HOH B 137 797 339 HOH HOH . X 5 HOH B 138 798 340 HOH HOH . X 5 HOH B 139 799 341 HOH HOH . X 5 HOH B 140 800 342 HOH HOH . X 5 HOH B 141 801 343 HOH HOH . X 5 HOH B 142 802 344 HOH HOH . X 5 HOH B 143 803 345 HOH HOH . X 5 HOH B 144 804 346 HOH HOH . X 5 HOH B 145 805 347 HOH HOH . X 5 HOH B 146 806 348 HOH HOH . X 5 HOH B 147 807 349 HOH HOH . X 5 HOH B 148 808 350 HOH HOH . X 5 HOH B 149 809 351 HOH HOH . X 5 HOH B 150 810 352 HOH HOH . X 5 HOH B 151 811 353 HOH HOH . X 5 HOH B 152 812 354 HOH HOH . X 5 HOH B 153 813 355 HOH HOH . X 5 HOH B 154 814 356 HOH HOH . X 5 HOH B 155 815 357 HOH HOH . X 5 HOH B 156 816 359 HOH HOH . X 5 HOH B 157 817 360 HOH HOH . X 5 HOH B 158 818 362 HOH HOH . X 5 HOH B 159 819 363 HOH HOH . X 5 HOH B 160 820 365 HOH HOH . X 5 HOH B 161 821 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 7.24 42.434 67.92 1 54.32 ? C1 EDO 20 A 1 HETATM 2 O O1 EDO . . . K 3 6.631 42.144 66.659 1 55.02 ? O1 EDO 20 A 1 HETATM 3 C C2 EDO . . . K 3 8.712 42.058 67.845 1 53.51 ? C2 EDO 20 A 1 HETATM 4 O O2 EDO . . . K 3 8.806 40.634 67.862 1 53.21 ? O2 EDO 20 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 4 #