data_3SRC # _model_server_result.job_id AE4o6tQf81-CBDhNM-XnaQ _model_server_result.datetime_utc '2024-12-26 12:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3src # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":12}' # _entry.id 3SRC # _exptl.entry_id 3SRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SRC _cell.length_a 120.565 _cell.length_b 165.828 _cell.length_c 93.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 67 1_555 A SG CYS 120 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 217 B CYS 433 1_555 B SG CYS 237 B CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 339 B CYS 555 1_555 B SG CYS 352 B CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 105 n n C1 C2 EDO sing 106 n n C1 H11 EDO sing 107 n n C1 H12 EDO sing 108 n n O1 HO1 EDO sing 109 n n C2 O2 EDO sing 110 n n C2 H21 EDO sing 111 n n C2 H22 EDO sing 112 n n O2 HO2 EDO sing 113 n n # _atom_sites.entry_id 3SRC _atom_sites.fract_transf_matrix[1][1] 0.008294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 2 2 EDO EDO . D 3 EDO A 1 3 3 EDO EDO . E 3 EDO A 1 4 4 EDO EDO . F 3 EDO A 1 5 5 EDO EDO . G 3 EDO A 1 8 8 EDO EDO . H 3 EDO A 1 10 10 EDO EDO . I 3 EDO A 1 22 22 EDO EDO . J 3 EDO B 1 12 12 EDO EDO . K 3 EDO B 1 13 13 EDO EDO . L 3 EDO B 1 14 14 EDO EDO . M 3 EDO B 1 15 15 EDO EDO . N 3 EDO B 1 16 16 EDO EDO . O 3 EDO B 1 17 17 EDO EDO . P 3 EDO B 1 18 18 EDO EDO . Q 3 EDO B 1 19 19 EDO EDO . R 3 EDO B 1 20 20 EDO EDO . S 3 EDO B 1 21 21 EDO EDO . T 4 28N B 1 1 1 28N 28N . U 3 EDO B 1 23 23 EDO EDO . V 5 HOH A 1 6 6 HOH HOH . V 5 HOH A 2 7 7 HOH HOH . V 5 HOH A 3 9 9 HOH HOH . V 5 HOH A 4 11 11 HOH HOH . V 5 HOH A 5 12 12 HOH HOH . V 5 HOH A 6 14 14 HOH HOH . V 5 HOH A 7 15 15 HOH HOH . V 5 HOH A 8 16 16 HOH HOH . V 5 HOH A 9 17 17 HOH HOH . V 5 HOH A 10 18 18 HOH HOH . V 5 HOH A 11 19 19 HOH HOH . V 5 HOH A 12 21 21 HOH HOH . V 5 HOH A 13 23 23 HOH HOH . V 5 HOH A 14 24 24 HOH HOH . V 5 HOH A 15 25 25 HOH HOH . V 5 HOH A 16 26 26 HOH HOH . V 5 HOH A 17 27 27 HOH HOH . V 5 HOH A 18 28 28 HOH HOH . V 5 HOH A 19 193 2 HOH HOH . V 5 HOH A 20 195 195 HOH HOH . V 5 HOH A 21 196 196 HOH HOH . V 5 HOH A 22 197 197 HOH HOH . V 5 HOH A 23 198 198 HOH HOH . V 5 HOH A 24 199 4 HOH HOH . V 5 HOH A 25 200 200 HOH HOH . V 5 HOH A 26 201 201 HOH HOH . V 5 HOH A 27 202 202 HOH HOH . V 5 HOH A 28 203 203 HOH HOH . V 5 HOH A 29 204 204 HOH HOH . V 5 HOH A 30 205 205 HOH HOH . V 5 HOH A 31 206 206 HOH HOH . V 5 HOH A 32 207 207 HOH HOH . V 5 HOH A 33 208 8 HOH HOH . V 5 HOH A 34 209 10 HOH HOH . V 5 HOH A 35 210 22 HOH HOH . V 5 HOH A 36 211 29 HOH HOH . V 5 HOH A 37 212 30 HOH HOH . V 5 HOH A 38 213 31 HOH HOH . V 5 HOH A 39 214 33 HOH HOH . V 5 HOH A 40 215 34 HOH HOH . V 5 HOH A 41 216 35 HOH HOH . V 5 HOH A 42 217 36 HOH HOH . V 5 HOH A 43 218 37 HOH HOH . V 5 HOH A 44 219 40 HOH HOH . V 5 HOH A 45 220 77 HOH HOH . V 5 HOH A 46 221 221 HOH HOH . V 5 HOH A 47 222 138 HOH HOH . V 5 HOH A 48 223 139 HOH HOH . V 5 HOH A 49 224 140 HOH HOH . V 5 HOH A 50 225 141 HOH HOH . V 5 HOH A 51 226 142 HOH HOH . V 5 HOH A 52 227 146 HOH HOH . V 5 HOH A 53 228 148 HOH HOH . V 5 HOH A 54 229 149 HOH HOH . V 5 HOH A 55 230 155 HOH HOH . V 5 HOH A 56 231 158 HOH HOH . V 5 HOH A 57 232 159 HOH HOH . V 5 HOH A 58 233 160 HOH HOH . V 5 HOH A 59 234 162 HOH HOH . V 5 HOH A 60 235 170 HOH HOH . V 5 HOH A 61 236 171 HOH HOH . V 5 HOH A 62 237 173 HOH HOH . V 5 HOH A 63 238 238 HOH HOH . V 5 HOH A 64 239 239 HOH HOH . V 5 HOH A 65 240 240 HOH HOH . V 5 HOH A 66 241 241 HOH HOH . V 5 HOH A 67 242 242 HOH HOH . V 5 HOH A 68 244 176 HOH HOH . V 5 HOH A 69 245 245 HOH HOH . V 5 HOH A 70 246 178 HOH HOH . V 5 HOH A 71 247 179 HOH HOH . V 5 HOH A 72 248 180 HOH HOH . V 5 HOH A 73 249 181 HOH HOH . V 5 HOH A 74 250 182 HOH HOH . V 5 HOH A 75 251 183 HOH HOH . V 5 HOH A 76 252 184 HOH HOH . V 5 HOH A 77 253 185 HOH HOH . V 5 HOH A 78 254 188 HOH HOH . V 5 HOH A 79 255 191 HOH HOH . W 5 HOH B 1 3 3 HOH HOH . W 5 HOH B 2 32 32 HOH HOH . W 5 HOH B 3 38 38 HOH HOH . W 5 HOH B 4 39 39 HOH HOH . W 5 HOH B 5 41 41 HOH HOH . W 5 HOH B 6 42 42 HOH HOH . W 5 HOH B 7 43 43 HOH HOH . W 5 HOH B 8 44 44 HOH HOH . W 5 HOH B 9 45 45 HOH HOH . W 5 HOH B 10 46 46 HOH HOH . W 5 HOH B 11 47 47 HOH HOH . W 5 HOH B 12 48 48 HOH HOH . W 5 HOH B 13 49 49 HOH HOH . W 5 HOH B 14 50 50 HOH HOH . W 5 HOH B 15 51 51 HOH HOH . W 5 HOH B 16 52 52 HOH HOH . W 5 HOH B 17 53 53 HOH HOH . W 5 HOH B 18 54 54 HOH HOH . W 5 HOH B 19 55 55 HOH HOH . W 5 HOH B 20 56 56 HOH HOH . W 5 HOH B 21 58 58 HOH HOH . W 5 HOH B 22 59 59 HOH HOH . W 5 HOH B 23 61 61 HOH HOH . W 5 HOH B 24 62 62 HOH HOH . W 5 HOH B 25 63 63 HOH HOH . W 5 HOH B 26 64 64 HOH HOH . W 5 HOH B 27 65 65 HOH HOH . W 5 HOH B 28 66 66 HOH HOH . W 5 HOH B 29 67 67 HOH HOH . W 5 HOH B 30 68 68 HOH HOH . W 5 HOH B 31 69 69 HOH HOH . W 5 HOH B 32 70 70 HOH HOH . W 5 HOH B 33 71 71 HOH HOH . W 5 HOH B 34 72 72 HOH HOH . W 5 HOH B 35 73 73 HOH HOH . W 5 HOH B 36 74 74 HOH HOH . W 5 HOH B 37 75 75 HOH HOH . W 5 HOH B 38 76 76 HOH HOH . W 5 HOH B 39 78 78 HOH HOH . W 5 HOH B 40 79 79 HOH HOH . W 5 HOH B 41 80 80 HOH HOH . W 5 HOH B 42 81 81 HOH HOH . W 5 HOH B 43 82 82 HOH HOH . W 5 HOH B 44 83 83 HOH HOH . W 5 HOH B 45 85 85 HOH HOH . W 5 HOH B 46 86 86 HOH HOH . W 5 HOH B 47 87 87 HOH HOH . W 5 HOH B 48 88 88 HOH HOH . W 5 HOH B 49 89 89 HOH HOH . W 5 HOH B 50 90 90 HOH HOH . W 5 HOH B 51 91 91 HOH HOH . W 5 HOH B 52 92 92 HOH HOH . W 5 HOH B 53 93 93 HOH HOH . W 5 HOH B 54 94 94 HOH HOH . W 5 HOH B 55 95 95 HOH HOH . W 5 HOH B 56 96 96 HOH HOH . W 5 HOH B 57 97 97 HOH HOH . W 5 HOH B 58 98 98 HOH HOH . W 5 HOH B 59 99 99 HOH HOH . W 5 HOH B 60 100 100 HOH HOH . W 5 HOH B 61 101 101 HOH HOH . W 5 HOH B 62 102 102 HOH HOH . W 5 HOH B 63 103 103 HOH HOH . W 5 HOH B 64 104 104 HOH HOH . W 5 HOH B 65 105 105 HOH HOH . W 5 HOH B 66 106 106 HOH HOH . W 5 HOH B 67 107 107 HOH HOH . W 5 HOH B 68 108 108 HOH HOH . W 5 HOH B 69 109 109 HOH HOH . W 5 HOH B 70 110 110 HOH HOH . W 5 HOH B 71 111 111 HOH HOH . W 5 HOH B 72 112 112 HOH HOH . W 5 HOH B 73 113 113 HOH HOH . W 5 HOH B 74 114 114 HOH HOH . W 5 HOH B 75 116 116 HOH HOH . W 5 HOH B 76 117 117 HOH HOH . W 5 HOH B 77 118 118 HOH HOH . W 5 HOH B 78 119 119 HOH HOH . W 5 HOH B 79 120 120 HOH HOH . W 5 HOH B 80 121 121 HOH HOH . W 5 HOH B 81 122 122 HOH HOH . W 5 HOH B 82 123 123 HOH HOH . W 5 HOH B 83 124 124 HOH HOH . W 5 HOH B 84 125 125 HOH HOH . W 5 HOH B 85 126 126 HOH HOH . W 5 HOH B 86 127 127 HOH HOH . W 5 HOH B 87 128 128 HOH HOH . W 5 HOH B 88 129 129 HOH HOH . W 5 HOH B 89 130 130 HOH HOH . W 5 HOH B 90 131 131 HOH HOH . W 5 HOH B 91 132 132 HOH HOH . W 5 HOH B 92 133 133 HOH HOH . W 5 HOH B 93 134 134 HOH HOH . W 5 HOH B 94 135 135 HOH HOH . W 5 HOH B 95 136 136 HOH HOH . W 5 HOH B 96 137 137 HOH HOH . W 5 HOH B 97 143 143 HOH HOH . W 5 HOH B 98 144 144 HOH HOH . W 5 HOH B 99 145 145 HOH HOH . W 5 HOH B 100 147 147 HOH HOH . W 5 HOH B 101 150 150 HOH HOH . W 5 HOH B 102 151 151 HOH HOH . W 5 HOH B 103 152 152 HOH HOH . W 5 HOH B 104 153 153 HOH HOH . W 5 HOH B 105 154 154 HOH HOH . W 5 HOH B 106 156 156 HOH HOH . W 5 HOH B 107 157 157 HOH HOH . W 5 HOH B 108 161 161 HOH HOH . W 5 HOH B 109 163 163 HOH HOH . W 5 HOH B 110 164 164 HOH HOH . W 5 HOH B 111 168 168 HOH HOH . W 5 HOH B 112 169 169 HOH HOH . W 5 HOH B 113 172 172 HOH HOH . W 5 HOH B 114 174 174 HOH HOH . W 5 HOH B 115 175 175 HOH HOH . W 5 HOH B 116 177 177 HOH HOH . W 5 HOH B 117 186 186 HOH HOH . W 5 HOH B 118 187 187 HOH HOH . W 5 HOH B 119 189 189 HOH HOH . W 5 HOH B 120 190 190 HOH HOH . W 5 HOH B 121 192 192 HOH HOH . W 5 HOH B 122 193 193 HOH HOH . W 5 HOH B 123 194 194 HOH HOH . W 5 HOH B 124 199 199 HOH HOH . W 5 HOH B 125 208 208 HOH HOH . W 5 HOH B 126 209 209 HOH HOH . W 5 HOH B 127 210 210 HOH HOH . W 5 HOH B 128 212 212 HOH HOH . W 5 HOH B 129 213 213 HOH HOH . W 5 HOH B 130 214 214 HOH HOH . W 5 HOH B 131 215 215 HOH HOH . W 5 HOH B 132 216 216 HOH HOH . W 5 HOH B 133 763 1 HOH HOH . W 5 HOH B 134 764 13 HOH HOH . W 5 HOH B 135 765 217 HOH HOH . W 5 HOH B 136 766 218 HOH HOH . W 5 HOH B 137 767 219 HOH HOH . W 5 HOH B 138 768 220 HOH HOH . W 5 HOH B 139 769 222 HOH HOH . W 5 HOH B 140 770 223 HOH HOH . W 5 HOH B 141 771 224 HOH HOH . W 5 HOH B 142 772 225 HOH HOH . W 5 HOH B 143 773 226 HOH HOH . W 5 HOH B 144 774 227 HOH HOH . W 5 HOH B 145 775 228 HOH HOH . W 5 HOH B 146 776 229 HOH HOH . W 5 HOH B 147 777 231 HOH HOH . W 5 HOH B 148 778 232 HOH HOH . W 5 HOH B 149 779 233 HOH HOH . W 5 HOH B 150 780 234 HOH HOH . W 5 HOH B 151 781 235 HOH HOH . W 5 HOH B 152 782 236 HOH HOH . W 5 HOH B 153 783 237 HOH HOH . W 5 HOH B 154 784 244 HOH HOH . W 5 HOH B 155 785 246 HOH HOH . W 5 HOH B 156 786 247 HOH HOH . W 5 HOH B 157 787 248 HOH HOH . W 5 HOH B 158 788 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 -34.802 -25.952 31.855 1 53.74 ? C1 EDO 12 B 1 HETATM 2 O O1 EDO . . . J 3 -33.473 -26.171 31.376 1 53.69 ? O1 EDO 12 B 1 HETATM 3 C C2 EDO . . . J 3 -35.616 -25.272 30.761 1 54.53 ? C2 EDO 12 B 1 HETATM 4 O O2 EDO . . . J 3 -36.935 -25.826 30.747 1 55.2 ? O2 EDO 12 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #