data_3SRE # _model_server_result.job_id MSw4_e71Vr5rNrrrhnIlXA _model_server_result.datetime_utc '2024-10-13 04:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":356}' # _entry.id 3SRE # _exptl.entry_id 3SRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SRE _cell.length_a 93.653 _cell.length_b 93.653 _cell.length_c 143.705 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 53 A GLU 53 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A O ILE 117 A ILE 117 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A OD1 ASN 168 A ASN 168 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc5 A OD2 ASP 169 A ASP 169 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc6 A OD1 ASP 169 A ASP 169 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc7 A OD1 ASN 224 A ASN 224 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A OD2 ASP 269 A ASP 269 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc9 A OD1 ASN 270 A ASN 270 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 G O HOH . A HOH 359 1_555 C CA CA . A CA 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc11 G O HOH . A HOH 360 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc12 G O HOH . A HOH 361 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 G O HOH . A HOH 379 1_555 B CA CA . A CA 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc14 C CA CA . A CA 1357 1_555 D O1 PO4 . A PO4 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 3SRE _atom_sites.fract_transf_matrix[1][1] 0.010678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1356 1356 CA CA . C 2 CA A 1 1357 1357 CA CA . D 3 PO4 A 1 1358 1358 PO4 PO4 . E 4 LMT A 1 356 1 LMT LMT . F 5 BR A 1 1360 1360 BR BR . G 6 HOH A 1 357 1 HOH HOH . G 6 HOH A 2 358 2 HOH HOH . G 6 HOH A 3 359 3 HOH HOH . G 6 HOH A 4 360 4 HOH HOH . G 6 HOH A 5 361 5 HOH HOH . G 6 HOH A 6 362 6 HOH HOH . G 6 HOH A 7 363 7 HOH HOH . G 6 HOH A 8 364 9 HOH HOH . G 6 HOH A 9 365 10 HOH HOH . G 6 HOH A 10 366 11 HOH HOH . G 6 HOH A 11 367 12 HOH HOH . G 6 HOH A 12 368 13 HOH HOH . G 6 HOH A 13 369 14 HOH HOH . G 6 HOH A 14 370 15 HOH HOH . G 6 HOH A 15 371 16 HOH HOH . G 6 HOH A 16 372 17 HOH HOH . G 6 HOH A 17 373 18 HOH HOH . G 6 HOH A 18 374 19 HOH HOH . G 6 HOH A 19 375 20 HOH HOH . G 6 HOH A 20 376 21 HOH HOH . G 6 HOH A 21 377 22 HOH HOH . G 6 HOH A 22 378 23 HOH HOH . G 6 HOH A 23 379 24 HOH HOH . G 6 HOH A 24 380 25 HOH HOH . G 6 HOH A 25 381 26 HOH HOH . G 6 HOH A 26 382 27 HOH HOH . G 6 HOH A 27 383 28 HOH HOH . G 6 HOH A 28 384 29 HOH HOH . G 6 HOH A 29 385 30 HOH HOH . G 6 HOH A 30 386 31 HOH HOH . G 6 HOH A 31 387 32 HOH HOH . G 6 HOH A 32 388 33 HOH HOH . G 6 HOH A 33 389 34 HOH HOH . G 6 HOH A 34 390 35 HOH HOH . G 6 HOH A 35 391 36 HOH HOH . G 6 HOH A 36 392 37 HOH HOH . G 6 HOH A 37 393 38 HOH HOH . G 6 HOH A 38 394 39 HOH HOH . G 6 HOH A 39 395 40 HOH HOH . G 6 HOH A 40 396 41 HOH HOH . G 6 HOH A 41 397 43 HOH HOH . G 6 HOH A 42 398 44 HOH HOH . G 6 HOH A 43 399 45 HOH HOH . G 6 HOH A 44 400 46 HOH HOH . G 6 HOH A 45 401 47 HOH HOH . G 6 HOH A 46 402 48 HOH HOH . G 6 HOH A 47 403 49 HOH HOH . G 6 HOH A 48 404 50 HOH HOH . G 6 HOH A 49 405 51 HOH HOH . G 6 HOH A 50 406 52 HOH HOH . G 6 HOH A 51 407 53 HOH HOH . G 6 HOH A 52 408 54 HOH HOH . G 6 HOH A 53 409 55 HOH HOH . G 6 HOH A 54 410 56 HOH HOH . G 6 HOH A 55 411 57 HOH HOH . G 6 HOH A 56 412 58 HOH HOH . G 6 HOH A 57 413 59 HOH HOH . G 6 HOH A 58 414 60 HOH HOH . G 6 HOH A 59 415 62 HOH HOH . G 6 HOH A 60 416 64 HOH HOH . G 6 HOH A 61 417 65 HOH HOH . G 6 HOH A 62 418 66 HOH HOH . G 6 HOH A 63 419 68 HOH HOH . G 6 HOH A 64 420 70 HOH HOH . G 6 HOH A 65 421 71 HOH HOH . G 6 HOH A 66 422 77 HOH HOH . G 6 HOH A 67 423 78 HOH HOH . G 6 HOH A 68 424 79 HOH HOH . G 6 HOH A 69 425 81 HOH HOH . G 6 HOH A 70 426 83 HOH HOH . G 6 HOH A 71 427 84 HOH HOH . G 6 HOH A 72 428 85 HOH HOH . G 6 HOH A 73 429 86 HOH HOH . G 6 HOH A 74 430 87 HOH HOH . G 6 HOH A 75 431 89 HOH HOH . G 6 HOH A 76 432 91 HOH HOH . G 6 HOH A 77 433 92 HOH HOH . G 6 HOH A 78 434 93 HOH HOH . G 6 HOH A 79 435 104 HOH HOH . G 6 HOH A 80 436 106 HOH HOH . G 6 HOH A 81 437 108 HOH HOH . G 6 HOH A 82 438 109 HOH HOH . G 6 HOH A 83 439 113 HOH HOH . G 6 HOH A 84 440 114 HOH HOH . G 6 HOH A 85 441 115 HOH HOH . G 6 HOH A 86 442 116 HOH HOH . G 6 HOH A 87 443 118 HOH HOH . G 6 HOH A 88 444 119 HOH HOH . G 6 HOH A 89 445 120 HOH HOH . G 6 HOH A 90 446 121 HOH HOH . G 6 HOH A 91 447 124 HOH HOH . G 6 HOH A 92 448 127 HOH HOH . G 6 HOH A 93 449 128 HOH HOH . G 6 HOH A 94 450 129 HOH HOH . G 6 HOH A 95 451 134 HOH HOH . G 6 HOH A 96 452 135 HOH HOH . G 6 HOH A 97 453 136 HOH HOH . G 6 HOH A 98 454 137 HOH HOH . G 6 HOH A 99 455 142 HOH HOH . G 6 HOH A 100 456 145 HOH HOH . G 6 HOH A 101 457 146 HOH HOH . G 6 HOH A 102 458 147 HOH HOH . G 6 HOH A 103 459 148 HOH HOH . G 6 HOH A 104 460 152 HOH HOH . G 6 HOH A 105 461 153 HOH HOH . G 6 HOH A 106 462 157 HOH HOH . G 6 HOH A 107 463 159 HOH HOH . G 6 HOH A 108 464 161 HOH HOH . G 6 HOH A 109 465 163 HOH HOH . G 6 HOH A 110 466 164 HOH HOH . G 6 HOH A 111 467 166 HOH HOH . G 6 HOH A 112 468 167 HOH HOH . G 6 HOH A 113 469 170 HOH HOH . G 6 HOH A 114 470 171 HOH HOH . G 6 HOH A 115 471 172 HOH HOH . G 6 HOH A 116 472 173 HOH HOH . G 6 HOH A 117 473 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . E 4 2.189 -1.793 26.42 1 73.12 ? C1B LMT 356 A 1 HETATM 2 C C2B LMT . . . E 4 0.839 -1.82 25.642 1 73.55 ? C2B LMT 356 A 1 HETATM 3 C C3B LMT . . . E 4 -0.104 -0.653 25.903 1 72.71 ? C3B LMT 356 A 1 HETATM 4 C C4B LMT . . . E 4 -0.051 -0.282 27.372 1 73.37 ? C4B LMT 356 A 1 HETATM 5 C C5B LMT . . . E 4 1.399 0.136 27.652 1 76.26 ? C5B LMT 356 A 1 HETATM 6 C C6B LMT . . . E 4 1.678 0.852 28.969 1 79.1 ? C6B LMT 356 A 1 HETATM 7 O O1B LMT . . . E 4 3.294 -1.336 25.63 1 73.83 ? O1B LMT 356 A 1 HETATM 8 O O2B LMT . . . E 4 1.026 -1.922 24.22 1 73.26 ? O2B LMT 356 A 1 HETATM 9 O O3B LMT . . . E 4 -1.436 -1.015 25.541 1 70.31 ? O3B LMT 356 A 1 HETATM 10 O O4' LMT . . . E 4 -1.032 0.734 27.582 1 72.05 ? O4' LMT 356 A 1 HETATM 11 O O5B LMT . . . E 4 2.189 -1.05 27.654 1 75.98 ? O5B LMT 356 A 1 HETATM 12 O O6B LMT . . . E 4 0.459 1.123 29.662 1 84 ? O6B LMT 356 A 1 HETATM 13 C C1' LMT . . . E 4 5.637 -4.861 25.957 1 63.7 ? C1' LMT 356 A 1 HETATM 14 C C2' LMT . . . E 4 6.253 -3.53 26.426 1 65.81 ? C2' LMT 356 A 1 HETATM 15 C C3' LMT . . . E 4 5.243 -2.39 26.617 1 68.33 ? C3' LMT 356 A 1 HETATM 16 C C4' LMT . . . E 4 4.284 -2.341 25.432 1 69.68 ? C4' LMT 356 A 1 HETATM 17 C C5' LMT . . . E 4 3.617 -3.708 25.25 1 69.45 ? C5' LMT 356 A 1 HETATM 18 C C6' LMT . . . E 4 2.673 -3.759 24.054 1 70.87 ? C6' LMT 356 A 1 HETATM 19 O O1' LMT . . . E 4 6.646 -5.677 25.334 1 72.01 ? O1' LMT 356 A 1 HETATM 20 O O2' LMT . . . E 4 6.949 -3.755 27.65 1 56.3 ? O2' LMT 356 A 1 HETATM 21 O O3' LMT . . . E 4 5.932 -1.139 26.757 1 69.67 ? O3' LMT 356 A 1 HETATM 22 O O5' LMT . . . E 4 4.596 -4.708 24.998 1 69.13 ? O5' LMT 356 A 1 HETATM 23 O O6' LMT . . . E 4 2.814 -5.026 23.396 1 72.02 ? O6' LMT 356 A 1 HETATM 24 C C1 LMT . . . E 4 7.005 -5.336 23.983 1 68.86 ? C1 LMT 356 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #