data_3SRK # _model_server_result.job_id 0AoE6sttgzotHws9fkRX6g _model_server_result.datetime_utc '2024-11-17 03:31:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3srk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 3SRK # _exptl.entry_id 3SRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pyrene-1,3,6,8-tetrasulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SRK _cell.length_a 122.42 _cell.length_b 130.16 _cell.length_c 166.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 122.42 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 336 A LYS 335 1_555 C C7 LSA . A LSA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 B NZ LYS 336 B LYS 335 1_555 G C7 LSA . B LSA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A OE1 GLU 241 A GLU 240 1_555 D K K . A K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? metalc ? metalc2 A OD1 ASP 265 A ASP 264 1_555 D K K . A K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc3 A O GLN 355 A GLN 354 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc4 A O LEU 358 A LEU 357 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A OE1 GLU 360 A GLU 359 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc6 A OE2 GLU 360 A GLU 359 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc7 B OE1 GLU 241 B GLU 240 1_555 I K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.494 ? metalc ? metalc8 B OD1 ASP 265 B ASP 264 1_555 I K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc9 B O GLN 355 B GLN 354 1_555 H K K . B K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc10 B O LEU 358 B LEU 357 1_555 H K K . B K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc11 B OE2 GLU 360 B GLU 359 1_555 H K K . B K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc12 B OE1 GLU 360 B GLU 359 1_555 H K K . B K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.248 ? metalc ? metalc13 H K K . B K 499 1_555 K O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.438 ? metalc ? metalc14 H K K . B K 499 1_555 K O HOH . B HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? # _chem_comp.formula 'C16 H10 O12 S4' _chem_comp.formula_weight 522.503 _chem_comp.id PTK _chem_comp.mon_nstd_flag . _chem_comp.name 'pyrene-1,3,6,8-tetrasulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,3,6,8-pyrenetetrasulfonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SBC OAA PTK doub 295 n n SBC OAB PTK sing 296 n n OAB HOAB PTK sing 297 n n SBD OAC PTK sing 298 n n OAC HOAC PTK sing 299 n n OAD SBD PTK doub 300 n n SBE OAE PTK doub 301 n n OAF SBE PTK doub 302 n n OAG SBF PTK doub 303 n n OAH SBF PTK doub 304 n n OAI SBC PTK doub 305 n n OAJ SBD PTK doub 306 n n SBE OAK PTK sing 307 n n OAK HOAK PTK sing 308 n n SBF OAL PTK sing 309 n n OAL HOAL PTK sing 310 n n CAT CAM PTK doub 311 n y CAM CAS PTK sing 312 n y CAM HAM PTK sing 313 n n CAV CAN PTK doub 314 n y CAN CAU PTK sing 315 n y CAN HAN PTK sing 316 n n CAW CAO PTK sing 317 n y CAP CAO PTK doub 318 n y CAO HAO PTK sing 319 n n CAY CAP PTK sing 320 n y CAP HAP PTK sing 321 n n CAR CAQ PTK sing 322 n y CAQ CAX PTK doub 323 n y CAQ HAQ PTK sing 324 n n CAR CAZ PTK doub 325 n y CAR HAR PTK sing 326 n n CAW CAS PTK doub 327 n y CAS SBC PTK sing 328 n n SBD CAT PTK sing 329 n n CAX CAT PTK sing 330 n y CAU CAY PTK doub 331 n y CAU SBE PTK sing 332 n n SBF CAV PTK sing 333 n n CAV CAZ PTK sing 334 n y CBA CAW PTK sing 335 n y CAX CBA PTK sing 336 n y CBB CAY PTK sing 337 n y CAZ CBB PTK sing 338 n y CBB CBA PTK doub 339 n y # _atom_sites.entry_id 3SRK _atom_sites.fract_transf_matrix[1][1] 0.008169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LSA A 1 500 500 LSA LSA . D 3 K A 1 499 3 K K . E 3 K A 1 501 4 K K . F 4 PTK A 1 502 1 PTK PTK . G 2 LSA B 1 500 500 LSA LSA . H 3 K B 1 499 5 K K . I 3 K B 1 501 7 K K . J 5 HOH A 1 503 1 HOH HOH . J 5 HOH A 2 504 5 HOH HOH . J 5 HOH A 3 505 7 HOH HOH . J 5 HOH A 4 506 8 HOH HOH . J 5 HOH A 5 507 10 HOH HOH . J 5 HOH A 6 508 11 HOH HOH . J 5 HOH A 7 509 13 HOH HOH . J 5 HOH A 8 510 15 HOH HOH . J 5 HOH A 9 511 16 HOH HOH . J 5 HOH A 10 512 20 HOH HOH . J 5 HOH A 11 513 23 HOH HOH . J 5 HOH A 12 514 25 HOH HOH . J 5 HOH A 13 515 26 HOH HOH . J 5 HOH A 14 516 27 HOH HOH . J 5 HOH A 15 517 29 HOH HOH . J 5 HOH A 16 518 31 HOH HOH . J 5 HOH A 17 519 34 HOH HOH . J 5 HOH A 18 520 39 HOH HOH . J 5 HOH A 19 521 42 HOH HOH . J 5 HOH A 20 522 44 HOH HOH . J 5 HOH A 21 523 48 HOH HOH . J 5 HOH A 22 524 52 HOH HOH . J 5 HOH A 23 525 56 HOH HOH . J 5 HOH A 24 526 57 HOH HOH . J 5 HOH A 25 527 60 HOH HOH . J 5 HOH A 26 528 64 HOH HOH . J 5 HOH A 27 529 68 HOH HOH . J 5 HOH A 28 530 78 HOH HOH . J 5 HOH A 29 531 83 HOH HOH . J 5 HOH A 30 532 93 HOH HOH . J 5 HOH A 31 533 97 HOH HOH . J 5 HOH A 32 534 98 HOH HOH . J 5 HOH A 33 535 99 HOH HOH . J 5 HOH A 34 536 100 HOH HOH . J 5 HOH A 35 537 103 HOH HOH . J 5 HOH A 36 538 104 HOH HOH . J 5 HOH A 37 539 108 HOH HOH . J 5 HOH A 38 540 116 HOH HOH . J 5 HOH A 39 541 135 HOH HOH . J 5 HOH A 40 542 137 HOH HOH . J 5 HOH A 41 543 139 HOH HOH . J 5 HOH A 42 544 140 HOH HOH . J 5 HOH A 43 545 145 HOH HOH . J 5 HOH A 44 546 155 HOH HOH . J 5 HOH A 45 547 156 HOH HOH . J 5 HOH A 46 548 162 HOH HOH . J 5 HOH A 47 549 163 HOH HOH . J 5 HOH A 48 550 164 HOH HOH . J 5 HOH A 49 551 166 HOH HOH . J 5 HOH A 50 552 167 HOH HOH . J 5 HOH A 51 553 168 HOH HOH . J 5 HOH A 52 554 169 HOH HOH . J 5 HOH A 53 555 170 HOH HOH . J 5 HOH A 54 556 171 HOH HOH . J 5 HOH A 55 557 175 HOH HOH . J 5 HOH A 56 558 177 HOH HOH . J 5 HOH A 57 559 180 HOH HOH . J 5 HOH A 58 560 181 HOH HOH . J 5 HOH A 59 561 182 HOH HOH . J 5 HOH A 60 562 183 HOH HOH . J 5 HOH A 61 563 184 HOH HOH . J 5 HOH A 62 564 185 HOH HOH . J 5 HOH A 63 565 186 HOH HOH . J 5 HOH A 64 566 187 HOH HOH . J 5 HOH A 65 567 188 HOH HOH . J 5 HOH A 66 568 195 HOH HOH . J 5 HOH A 67 569 196 HOH HOH . J 5 HOH A 68 570 197 HOH HOH . J 5 HOH A 69 571 201 HOH HOH . K 5 HOH B 1 502 2 HOH HOH . K 5 HOH B 2 503 3 HOH HOH . K 5 HOH B 3 504 4 HOH HOH . K 5 HOH B 4 505 9 HOH HOH . K 5 HOH B 5 506 12 HOH HOH . K 5 HOH B 6 507 14 HOH HOH . K 5 HOH B 7 508 17 HOH HOH . K 5 HOH B 8 509 18 HOH HOH . K 5 HOH B 9 510 19 HOH HOH . K 5 HOH B 10 511 21 HOH HOH . K 5 HOH B 11 512 22 HOH HOH . K 5 HOH B 12 513 24 HOH HOH . K 5 HOH B 13 514 28 HOH HOH . K 5 HOH B 14 515 30 HOH HOH . K 5 HOH B 15 516 32 HOH HOH . K 5 HOH B 16 517 35 HOH HOH . K 5 HOH B 17 518 36 HOH HOH . K 5 HOH B 18 519 37 HOH HOH . K 5 HOH B 19 520 38 HOH HOH . K 5 HOH B 20 521 40 HOH HOH . K 5 HOH B 21 522 43 HOH HOH . K 5 HOH B 22 523 45 HOH HOH . K 5 HOH B 23 524 51 HOH HOH . K 5 HOH B 24 525 53 HOH HOH . K 5 HOH B 25 526 54 HOH HOH . K 5 HOH B 26 527 67 HOH HOH . K 5 HOH B 27 528 69 HOH HOH . K 5 HOH B 28 529 70 HOH HOH . K 5 HOH B 29 530 75 HOH HOH . K 5 HOH B 30 531 76 HOH HOH . K 5 HOH B 31 532 77 HOH HOH . K 5 HOH B 32 533 80 HOH HOH . K 5 HOH B 33 534 81 HOH HOH . K 5 HOH B 34 535 85 HOH HOH . K 5 HOH B 35 536 87 HOH HOH . K 5 HOH B 36 537 88 HOH HOH . K 5 HOH B 37 538 89 HOH HOH . K 5 HOH B 38 539 90 HOH HOH . K 5 HOH B 39 540 95 HOH HOH . K 5 HOH B 40 541 96 HOH HOH . K 5 HOH B 41 542 106 HOH HOH . K 5 HOH B 42 543 110 HOH HOH . K 5 HOH B 43 544 119 HOH HOH . K 5 HOH B 44 545 120 HOH HOH . K 5 HOH B 45 546 124 HOH HOH . K 5 HOH B 46 547 126 HOH HOH . K 5 HOH B 47 548 129 HOH HOH . K 5 HOH B 48 549 130 HOH HOH . K 5 HOH B 49 550 132 HOH HOH . K 5 HOH B 50 551 133 HOH HOH . K 5 HOH B 51 552 147 HOH HOH . K 5 HOH B 52 553 148 HOH HOH . K 5 HOH B 53 554 151 HOH HOH . K 5 HOH B 54 555 159 HOH HOH . K 5 HOH B 55 556 172 HOH HOH . K 5 HOH B 56 557 173 HOH HOH . K 5 HOH B 57 558 174 HOH HOH . K 5 HOH B 58 559 176 HOH HOH . K 5 HOH B 59 560 178 HOH HOH . K 5 HOH B 60 561 179 HOH HOH . K 5 HOH B 61 562 189 HOH HOH . K 5 HOH B 62 563 191 HOH HOH . K 5 HOH B 63 564 192 HOH HOH . K 5 HOH B 64 565 193 HOH HOH . K 5 HOH B 65 566 194 HOH HOH . K 5 HOH B 66 567 198 HOH HOH . K 5 HOH B 67 568 199 HOH HOH . K 5 HOH B 68 569 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA PTK . . . F 4 23.571 -2.209 2.433 0.5 66.57 ? OAA PTK 502 A 1 HETATM 2 O OAB PTK . . . F 4 24.238 0.08 2.804 0.5 66.26 ? OAB PTK 502 A 1 HETATM 3 O OAC PTK . . . F 4 23.573 2.215 -2.438 0.5 66.41 ? OAC PTK 502 A 1 HETATM 4 O OAD PTK . . . F 4 24.232 -0.088 -2.801 0.5 65.84 ? OAD PTK 502 A 1 HETATM 5 O OAE PTK . . . F 4 15.358 -2.138 2.429 0.5 64.64 ? OAE PTK 502 A 1 HETATM 6 O OAF PTK . . . F 4 17.007 -0.839 3.662 0.5 64.75 ? OAF PTK 502 A 1 HETATM 7 O OAG PTK . . . F 4 15.358 2.137 -2.429 0.5 64.44 ? OAG PTK 502 A 1 HETATM 8 O OAH PTK . . . F 4 17.008 0.838 -3.661 0.5 64.28 ? OAH PTK 502 A 1 HETATM 9 O OAI PTK . . . F 4 22.194 -0.746 3.654 0.5 66.2 ? OAI PTK 502 A 1 HETATM 10 O OAJ PTK . . . F 4 22.187 0.738 -3.65 0.5 66.22 ? OAJ PTK 502 A 1 HETATM 11 O OAK PTK . . . F 4 15.044 0.153 2.847 0.5 64.44 ? OAK PTK 502 A 1 HETATM 12 O OAL PTK . . . F 4 15.045 -0.155 -2.848 0.5 64.59 ? OAL PTK 502 A 1 HETATM 13 C CAM PTK . . . F 4 22.945 0.002 0.002 0.5 65.08 ? CAM PTK 502 A 1 HETATM 14 C CAN PTK . . . F 4 16.114 -0.001 0 0.5 63.84 ? CAN PTK 502 A 1 HETATM 15 C CAO PTK . . . F 4 20.211 -0.716 2.278 0.5 63.85 ? CAO PTK 502 A 1 HETATM 16 C CAP PTK . . . F 4 18.838 -0.714 2.277 0.5 63.58 ? CAP PTK 502 A 1 HETATM 17 C CAQ PTK . . . F 4 20.212 0.718 -2.276 0.5 63.77 ? CAQ PTK 502 A 1 HETATM 18 C CAR PTK . . . F 4 18.839 0.715 -2.276 0.5 63.53 ? CAR PTK 502 A 1 HETATM 19 C CAS PTK . . . F 4 22.253 -0.351 1.137 0.5 65.15 ? CAS PTK 502 A 1 HETATM 20 C CAT PTK . . . F 4 22.253 0.354 -1.134 0.5 65.08 ? CAT PTK 502 A 1 HETATM 21 C CAU PTK . . . F 4 16.811 -0.358 1.129 0.5 63.94 ? CAU PTK 502 A 1 HETATM 22 C CAV PTK . . . F 4 16.811 0.357 -1.129 0.5 63.9 ? CAV PTK 502 A 1 HETATM 23 C CAW PTK . . . F 4 20.885 -0.354 1.134 0.5 64.23 ? CAW PTK 502 A 1 HETATM 24 C CAX PTK . . . F 4 20.886 0.357 -1.132 0.5 64.19 ? CAX PTK 502 A 1 HETATM 25 C CAY PTK . . . F 4 18.172 -0.348 1.133 0.5 63.63 ? CAY PTK 502 A 1 HETATM 26 C CAZ PTK . . . F 4 18.173 0.349 -1.133 0.5 63.58 ? CAZ PTK 502 A 1 HETATM 27 C CBA PTK . . . F 4 20.212 0.001 0.001 0.5 63.88 ? CBA PTK 502 A 1 HETATM 28 C CBB PTK . . . F 4 18.851 0 0.001 0.5 63.62 ? CBB PTK 502 A 1 HETATM 29 S SBC PTK . . . F 4 23.08 -0.807 2.567 0.5 66.51 ? SBC PTK 502 A 1 HETATM 30 S SBD PTK . . . F 4 23.082 0.814 -2.569 0.5 66.37 ? SBD PTK 502 A 1 HETATM 31 S SBE PTK . . . F 4 16.014 -0.809 2.565 0.5 64.85 ? SBE PTK 502 A 1 HETATM 32 S SBF PTK . . . F 4 16.014 0.808 -2.565 0.5 64.68 ? SBF PTK 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #