data_3SRR # _model_server_result.job_id dLk9WN0SktVyYcQYczPDug _model_server_result.datetime_utc '2024-11-27 21:31:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3srr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":169}' # _entry.id 3SRR # _exptl.entry_id 3SRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SRR _cell.length_a 79.317 _cell.length_b 79.317 _cell.length_c 107.394 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 3SRR _atom_sites.fract_transf_matrix[1][1] 0.012608 _atom_sites.fract_transf_matrix[1][2] 0.007279 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q20 X 1 168 159 Q20 Q20 . C 3 NAP X 1 169 160 NAP NAP . D 4 HOH X 1 170 2 HOH HOH . D 4 HOH X 2 171 3 HOH HOH . D 4 HOH X 3 172 4 HOH HOH . D 4 HOH X 4 173 5 HOH HOH . D 4 HOH X 5 174 7 HOH HOH . D 4 HOH X 6 175 8 HOH HOH . D 4 HOH X 7 176 9 HOH HOH . D 4 HOH X 8 177 10 HOH HOH . D 4 HOH X 9 178 11 HOH HOH . D 4 HOH X 10 179 12 HOH HOH . D 4 HOH X 11 180 13 HOH HOH . D 4 HOH X 12 181 14 HOH HOH . D 4 HOH X 13 182 15 HOH HOH . D 4 HOH X 14 183 16 HOH HOH . D 4 HOH X 15 184 17 HOH HOH . D 4 HOH X 16 185 18 HOH HOH . D 4 HOH X 17 186 19 HOH HOH . D 4 HOH X 18 187 20 HOH HOH . D 4 HOH X 19 188 22 HOH HOH . D 4 HOH X 20 189 23 HOH HOH . D 4 HOH X 21 190 24 HOH HOH . D 4 HOH X 22 191 25 HOH HOH . D 4 HOH X 23 192 26 HOH HOH . D 4 HOH X 24 193 27 HOH HOH . D 4 HOH X 25 194 28 HOH HOH . D 4 HOH X 26 195 29 HOH HOH . D 4 HOH X 27 196 30 HOH HOH . D 4 HOH X 28 197 31 HOH HOH . D 4 HOH X 29 198 33 HOH HOH . D 4 HOH X 30 199 34 HOH HOH . D 4 HOH X 31 200 35 HOH HOH . D 4 HOH X 32 201 36 HOH HOH . D 4 HOH X 33 202 37 HOH HOH . D 4 HOH X 34 203 38 HOH HOH . D 4 HOH X 35 204 39 HOH HOH . D 4 HOH X 36 205 40 HOH HOH . D 4 HOH X 37 206 41 HOH HOH . D 4 HOH X 38 207 42 HOH HOH . D 4 HOH X 39 208 43 HOH HOH . D 4 HOH X 40 209 44 HOH HOH . D 4 HOH X 41 210 45 HOH HOH . D 4 HOH X 42 211 46 HOH HOH . D 4 HOH X 43 212 47 HOH HOH . D 4 HOH X 44 213 48 HOH HOH . D 4 HOH X 45 214 49 HOH HOH . D 4 HOH X 46 215 50 HOH HOH . D 4 HOH X 47 216 51 HOH HOH . D 4 HOH X 48 217 52 HOH HOH . D 4 HOH X 49 218 53 HOH HOH . D 4 HOH X 50 219 54 HOH HOH . D 4 HOH X 51 220 55 HOH HOH . D 4 HOH X 52 221 56 HOH HOH . D 4 HOH X 53 222 57 HOH HOH . D 4 HOH X 54 223 58 HOH HOH . D 4 HOH X 55 224 59 HOH HOH . D 4 HOH X 56 225 60 HOH HOH . D 4 HOH X 57 226 61 HOH HOH . D 4 HOH X 58 227 62 HOH HOH . D 4 HOH X 59 228 63 HOH HOH . D 4 HOH X 60 229 64 HOH HOH . D 4 HOH X 61 230 65 HOH HOH . D 4 HOH X 62 231 66 HOH HOH . D 4 HOH X 63 232 67 HOH HOH . D 4 HOH X 64 233 68 HOH HOH . D 4 HOH X 65 234 69 HOH HOH . D 4 HOH X 66 235 70 HOH HOH . D 4 HOH X 67 236 71 HOH HOH . D 4 HOH X 68 237 72 HOH HOH . D 4 HOH X 69 238 73 HOH HOH . D 4 HOH X 70 239 74 HOH HOH . D 4 HOH X 71 240 75 HOH HOH . D 4 HOH X 72 241 76 HOH HOH . D 4 HOH X 73 242 77 HOH HOH . D 4 HOH X 74 243 78 HOH HOH . D 4 HOH X 75 244 79 HOH HOH . D 4 HOH X 76 245 80 HOH HOH . D 4 HOH X 77 246 82 HOH HOH . D 4 HOH X 78 247 84 HOH HOH . D 4 HOH X 79 248 85 HOH HOH . D 4 HOH X 80 249 86 HOH HOH . D 4 HOH X 81 250 87 HOH HOH . D 4 HOH X 82 251 88 HOH HOH . D 4 HOH X 83 252 89 HOH HOH . D 4 HOH X 84 253 91 HOH HOH . D 4 HOH X 85 254 92 HOH HOH . D 4 HOH X 86 255 93 HOH HOH . D 4 HOH X 87 256 94 HOH HOH . D 4 HOH X 88 257 95 HOH HOH . D 4 HOH X 89 258 98 HOH HOH . D 4 HOH X 90 259 99 HOH HOH . D 4 HOH X 91 260 100 HOH HOH . D 4 HOH X 92 261 101 HOH HOH . D 4 HOH X 93 262 102 HOH HOH . D 4 HOH X 94 263 105 HOH HOH . D 4 HOH X 95 264 106 HOH HOH . D 4 HOH X 96 265 107 HOH HOH . D 4 HOH X 97 266 108 HOH HOH . D 4 HOH X 98 267 109 HOH HOH . D 4 HOH X 99 268 110 HOH HOH . D 4 HOH X 100 269 111 HOH HOH . D 4 HOH X 101 270 113 HOH HOH . D 4 HOH X 102 271 115 HOH HOH . D 4 HOH X 103 272 116 HOH HOH . D 4 HOH X 104 273 117 HOH HOH . D 4 HOH X 105 274 118 HOH HOH . D 4 HOH X 106 275 119 HOH HOH . D 4 HOH X 107 276 121 HOH HOH . D 4 HOH X 108 277 122 HOH HOH . D 4 HOH X 109 278 123 HOH HOH . D 4 HOH X 110 279 124 HOH HOH . D 4 HOH X 111 280 126 HOH HOH . D 4 HOH X 112 281 127 HOH HOH . D 4 HOH X 113 282 128 HOH HOH . D 4 HOH X 114 283 129 HOH HOH . D 4 HOH X 115 284 130 HOH HOH . D 4 HOH X 116 285 131 HOH HOH . D 4 HOH X 117 286 132 HOH HOH . D 4 HOH X 118 287 133 HOH HOH . D 4 HOH X 119 288 134 HOH HOH . D 4 HOH X 120 289 135 HOH HOH . D 4 HOH X 121 290 136 HOH HOH . D 4 HOH X 122 291 137 HOH HOH . D 4 HOH X 123 292 138 HOH HOH . D 4 HOH X 124 293 139 HOH HOH . D 4 HOH X 125 294 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -6.534 -31.675 -6.415 1 16.83 ? PA NAP 169 X 1 HETATM 2 O O1A NAP . . . C 3 -6.725 -30.41 -5.668 1 17.23 ? O1A NAP 169 X 1 HETATM 3 O O2A NAP . . . C 3 -5.228 -32.345 -6.285 1 15.99 ? O2A NAP 169 X 1 HETATM 4 O O5B NAP . . . C 3 -7.671 -32.749 -6.073 1 17.32 ? O5B NAP 169 X 1 HETATM 5 C C5B NAP . . . C 3 -9.023 -32.416 -6.29 1 19.14 ? C5B NAP 169 X 1 HETATM 6 C C4B NAP . . . C 3 -9.803 -33.435 -5.496 1 19.8 ? C4B NAP 169 X 1 HETATM 7 O O4B NAP . . . C 3 -9.536 -33.223 -4.126 1 18.92 ? O4B NAP 169 X 1 HETATM 8 C C3B NAP . . . C 3 -11.314 -33.309 -5.627 1 20.5 ? C3B NAP 169 X 1 HETATM 9 O O3B NAP . . . C 3 -11.84 -33.822 -6.831 1 19.95 ? O3B NAP 169 X 1 HETATM 10 C C2B NAP . . . C 3 -11.741 -34.067 -4.386 1 19.13 ? C2B NAP 169 X 1 HETATM 11 O O2B NAP . . . C 3 -11.529 -35.452 -4.549 1 16.94 ? O2B NAP 169 X 1 HETATM 12 C C1B NAP . . . C 3 -10.687 -33.585 -3.385 1 18.64 ? C1B NAP 169 X 1 HETATM 13 N N9A NAP . . . C 3 -11.182 -32.471 -2.568 1 18.28 ? N9A NAP 169 X 1 HETATM 14 C C8A NAP . . . C 3 -10.786 -31.155 -2.586 1 18.86 ? C8A NAP 169 X 1 HETATM 15 N N7A NAP . . . C 3 -11.481 -30.463 -1.642 1 19.04 ? N7A NAP 169 X 1 HETATM 16 C C5A NAP . . . C 3 -12.331 -31.331 -1.036 1 20.08 ? C5A NAP 169 X 1 HETATM 17 C C6A NAP . . . C 3 -13.276 -31.18 -0.019 1 21.97 ? C6A NAP 169 X 1 HETATM 18 N N6A NAP . . . C 3 -13.483 -29.992 0.544 1 22.3 ? N6A NAP 169 X 1 HETATM 19 N N1A NAP . . . C 3 -14.008 -32.286 0.399 1 23.3 ? N1A NAP 169 X 1 HETATM 20 C C2A NAP . . . C 3 -13.792 -33.513 -0.167 1 23.08 ? C2A NAP 169 X 1 HETATM 21 N N3A NAP . . . C 3 -12.86 -33.661 -1.177 1 22.32 ? N3A NAP 169 X 1 HETATM 22 C C4A NAP . . . C 3 -12.145 -32.589 -1.602 1 19.39 ? C4A NAP 169 X 1 HETATM 23 O O3 NAP . . . C 3 -6.944 -31.437 -7.935 1 15.9 ? O3 NAP 169 X 1 HETATM 24 P PN NAP . . . C 3 -6.785 -30.24 -8.972 1 15.96 ? PN NAP 169 X 1 HETATM 25 O O1N NAP . . . C 3 -7.454 -29.059 -8.369 1 16.61 ? O1N NAP 169 X 1 HETATM 26 O O2N NAP . . . C 3 -7.24 -30.715 -10.297 1 14.85 ? O2N NAP 169 X 1 HETATM 27 O O5D NAP . . . C 3 -5.195 -29.964 -9.034 1 15.37 ? O5D NAP 169 X 1 HETATM 28 C C5D NAP . . . C 3 -4.354 -30.907 -9.682 1 14.51 ? C5D NAP 169 X 1 HETATM 29 C C4D NAP . . . C 3 -3.263 -30.175 -10.459 1 14.56 ? C4D NAP 169 X 1 HETATM 30 O O4D NAP . . . C 3 -2.409 -29.525 -9.509 1 11.16 ? O4D NAP 169 X 1 HETATM 31 C C3D NAP . . . C 3 -2.412 -31.138 -11.29 1 15.74 ? C3D NAP 169 X 1 HETATM 32 O O3D NAP . . . C 3 -2.055 -30.585 -12.552 1 14.5 ? O3D NAP 169 X 1 HETATM 33 C C2D NAP . . . C 3 -1.169 -31.3 -10.456 1 13.6 ? C2D NAP 169 X 1 HETATM 34 O O2D NAP . . . C 3 -0.03 -31.617 -11.243 1 16.41 ? O2D NAP 169 X 1 HETATM 35 C C1D NAP . . . C 3 -1.085 -29.901 -9.857 1 13.4 ? C1D NAP 169 X 1 HETATM 36 N N1N NAP . . . C 3 -0.309 -29.73 -8.638 1 13.4 ? N1N NAP 169 X 1 HETATM 37 C C2N NAP . . . C 3 0.64 -28.774 -8.68 1 11.44 ? C2N NAP 169 X 1 HETATM 38 C C3N NAP . . . C 3 1.407 -28.516 -7.553 1 11.33 ? C3N NAP 169 X 1 HETATM 39 C C7N NAP . . . C 3 2.476 -27.485 -7.652 1 12.93 ? C7N NAP 169 X 1 HETATM 40 O O7N NAP . . . C 3 2.889 -26.914 -6.486 1 13.06 ? O7N NAP 169 X 1 HETATM 41 N N7N NAP . . . C 3 3.01 -27.056 -8.805 1 14.04 ? N7N NAP 169 X 1 HETATM 42 C C4N NAP . . . C 3 1.124 -29.221 -6.365 1 14.22 ? C4N NAP 169 X 1 HETATM 43 C C5N NAP . . . C 3 0.127 -30.218 -6.343 1 12.98 ? C5N NAP 169 X 1 HETATM 44 C C6N NAP . . . C 3 -0.614 -30.454 -7.497 1 12.63 ? C6N NAP 169 X 1 HETATM 45 P P2B NAP . . . C 3 -12.717 -36.461 -4.997 1 20.13 ? P2B NAP 169 X 1 HETATM 46 O O1X NAP . . . C 3 -12.138 -37.868 -4.914 1 18.39 ? O1X NAP 169 X 1 HETATM 47 O O2X NAP . . . C 3 -13.837 -36.222 -3.991 1 16.23 ? O2X NAP 169 X 1 HETATM 48 O O3X NAP . . . C 3 -13.169 -36.11 -6.384 1 19.14 ? O3X NAP 169 X 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #