data_3SRS
#
_model_server_result.job_id            oKi-swC-mTZiIbvvh1JtkQ 
_model_server_result.datetime_utc      '2024-11-05 14:56:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3srs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":169}' 
#
_entry.id    3SRS 
#
_exptl.entry_id    3SRS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SRS 
_cell.length_a            79.302 
_cell.length_b            79.302 
_cell.length_c            107.373 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SRS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 266 n n 
PA O2A NAP sing 267 n n 
PA O5B NAP sing 268 n n 
PA O3 NAP sing 269 n n 
O2A HOA2 NAP sing 270 n n 
O5B C5B NAP sing 271 n n 
C5B C4B NAP sing 272 n n 
C5B H51A NAP sing 273 n n 
C5B H52A NAP sing 274 n n 
C4B O4B NAP sing 275 n n 
C4B C3B NAP sing 276 n n 
C4B H4B NAP sing 277 n n 
O4B C1B NAP sing 278 n n 
C3B O3B NAP sing 279 n n 
C3B C2B NAP sing 280 n n 
C3B H3B NAP sing 281 n n 
O3B HO3A NAP sing 282 n n 
C2B O2B NAP sing 283 n n 
C2B C1B NAP sing 284 n n 
C2B H2B NAP sing 285 n n 
O2B P2B NAP sing 286 n n 
C1B N9A NAP sing 287 n n 
C1B H1B NAP sing 288 n n 
N9A C8A NAP sing 289 n y 
N9A C4A NAP sing 290 n y 
C8A N7A NAP doub 291 n y 
C8A H8A NAP sing 292 n n 
N7A C5A NAP sing 293 n y 
C5A C6A NAP sing 294 n y 
C5A C4A NAP doub 295 n y 
C6A N6A NAP sing 296 n n 
C6A N1A NAP doub 297 n y 
N6A H61A NAP sing 298 n n 
N6A H62A NAP sing 299 n n 
N1A C2A NAP sing 300 n y 
C2A N3A NAP doub 301 n y 
C2A H2A NAP sing 302 n n 
N3A C4A NAP sing 303 n y 
O3 PN NAP sing 304 n n 
PN O1N NAP doub 305 n n 
PN O2N NAP sing 306 n n 
PN O5D NAP sing 307 n n 
O5D C5D NAP sing 308 n n 
C5D C4D NAP sing 309 n n 
C5D H51N NAP sing 310 n n 
C5D H52N NAP sing 311 n n 
C4D O4D NAP sing 312 n n 
C4D C3D NAP sing 313 n n 
C4D H4D NAP sing 314 n n 
O4D C1D NAP sing 315 n n 
C3D O3D NAP sing 316 n n 
C3D C2D NAP sing 317 n n 
C3D H3D NAP sing 318 n n 
O3D HO3N NAP sing 319 n n 
C2D O2D NAP sing 320 n n 
C2D C1D NAP sing 321 n n 
C2D H2D NAP sing 322 n n 
O2D HO2N NAP sing 323 n n 
C1D N1N NAP sing 324 n n 
C1D H1D NAP sing 325 n n 
N1N C2N NAP sing 326 n y 
N1N C6N NAP doub 327 n y 
C2N C3N NAP doub 328 n y 
C2N H2N NAP sing 329 n n 
C3N C7N NAP sing 330 n n 
C3N C4N NAP sing 331 n y 
C7N O7N NAP doub 332 n n 
C7N N7N NAP sing 333 n n 
N7N H71N NAP sing 334 n n 
N7N H72N NAP sing 335 n n 
C4N C5N NAP doub 336 n y 
C4N H4N NAP sing 337 n n 
C5N C6N NAP sing 338 n y 
C5N H5N NAP sing 339 n n 
C6N H6N NAP sing 340 n n 
P2B O1X NAP doub 341 n n 
P2B O2X NAP sing 342 n n 
P2B O3X NAP sing 343 n n 
O2X HOP2 NAP sing 344 n n 
O3X HOP3 NAP sing 345 n n 
#
_atom_sites.entry_id                     3SRS 
_atom_sites.fract_transf_matrix[1][1]    0.01261 
_atom_sites.fract_transf_matrix[1][2]    0.00728 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 M23 X 1 168 159 M23 M23 . 
C 3 NAP X 1 169 160 NAP NAP . 
D 4 HOH X 1 170 2 HOH HOH . 
D 4 HOH X 2 171 3 HOH HOH . 
D 4 HOH X 3 172 4 HOH HOH . 
D 4 HOH X 4 173 5 HOH HOH . 
D 4 HOH X 5 174 6 HOH HOH . 
D 4 HOH X 6 175 7 HOH HOH . 
D 4 HOH X 7 176 8 HOH HOH . 
D 4 HOH X 8 177 9 HOH HOH . 
D 4 HOH X 9 178 10 HOH HOH . 
D 4 HOH X 10 179 11 HOH HOH . 
D 4 HOH X 11 180 12 HOH HOH . 
D 4 HOH X 12 181 13 HOH HOH . 
D 4 HOH X 13 182 14 HOH HOH . 
D 4 HOH X 14 183 16 HOH HOH . 
D 4 HOH X 15 184 17 HOH HOH . 
D 4 HOH X 16 185 18 HOH HOH . 
D 4 HOH X 17 186 19 HOH HOH . 
D 4 HOH X 18 187 20 HOH HOH . 
D 4 HOH X 19 188 21 HOH HOH . 
D 4 HOH X 20 189 22 HOH HOH . 
D 4 HOH X 21 190 23 HOH HOH . 
D 4 HOH X 22 191 24 HOH HOH . 
D 4 HOH X 23 192 25 HOH HOH . 
D 4 HOH X 24 193 26 HOH HOH . 
D 4 HOH X 25 194 27 HOH HOH . 
D 4 HOH X 26 195 28 HOH HOH . 
D 4 HOH X 27 196 29 HOH HOH . 
D 4 HOH X 28 197 30 HOH HOH . 
D 4 HOH X 29 198 31 HOH HOH . 
D 4 HOH X 30 199 32 HOH HOH . 
D 4 HOH X 31 200 33 HOH HOH . 
D 4 HOH X 32 201 34 HOH HOH . 
D 4 HOH X 33 202 35 HOH HOH . 
D 4 HOH X 34 203 36 HOH HOH . 
D 4 HOH X 35 204 37 HOH HOH . 
D 4 HOH X 36 205 38 HOH HOH . 
D 4 HOH X 37 206 39 HOH HOH . 
D 4 HOH X 38 207 40 HOH HOH . 
D 4 HOH X 39 208 42 HOH HOH . 
D 4 HOH X 40 209 43 HOH HOH . 
D 4 HOH X 41 210 44 HOH HOH . 
D 4 HOH X 42 211 45 HOH HOH . 
D 4 HOH X 43 212 46 HOH HOH . 
D 4 HOH X 44 213 48 HOH HOH . 
D 4 HOH X 45 214 49 HOH HOH . 
D 4 HOH X 46 215 50 HOH HOH . 
D 4 HOH X 47 216 51 HOH HOH . 
D 4 HOH X 48 217 52 HOH HOH . 
D 4 HOH X 49 218 53 HOH HOH . 
D 4 HOH X 50 219 55 HOH HOH . 
D 4 HOH X 51 220 57 HOH HOH . 
D 4 HOH X 52 221 58 HOH HOH . 
D 4 HOH X 53 222 59 HOH HOH . 
D 4 HOH X 54 223 60 HOH HOH . 
D 4 HOH X 55 224 61 HOH HOH . 
D 4 HOH X 56 225 62 HOH HOH . 
D 4 HOH X 57 226 63 HOH HOH . 
D 4 HOH X 58 227 64 HOH HOH . 
D 4 HOH X 59 228 65 HOH HOH . 
D 4 HOH X 60 229 66 HOH HOH . 
D 4 HOH X 61 230 67 HOH HOH . 
D 4 HOH X 62 231 68 HOH HOH . 
D 4 HOH X 63 232 69 HOH HOH . 
D 4 HOH X 64 233 70 HOH HOH . 
D 4 HOH X 65 234 72 HOH HOH . 
D 4 HOH X 66 235 73 HOH HOH . 
D 4 HOH X 67 236 74 HOH HOH . 
D 4 HOH X 68 237 75 HOH HOH . 
D 4 HOH X 69 238 76 HOH HOH . 
D 4 HOH X 70 239 77 HOH HOH . 
D 4 HOH X 71 240 78 HOH HOH . 
D 4 HOH X 72 241 79 HOH HOH . 
D 4 HOH X 73 242 80 HOH HOH . 
D 4 HOH X 74 243 83 HOH HOH . 
D 4 HOH X 75 244 85 HOH HOH . 
D 4 HOH X 76 245 86 HOH HOH . 
D 4 HOH X 77 246 87 HOH HOH . 
D 4 HOH X 78 247 88 HOH HOH . 
D 4 HOH X 79 248 89 HOH HOH . 
D 4 HOH X 80 249 90 HOH HOH . 
D 4 HOH X 81 250 91 HOH HOH . 
D 4 HOH X 82 251 92 HOH HOH . 
D 4 HOH X 83 252 93 HOH HOH . 
D 4 HOH X 84 253 99 HOH HOH . 
D 4 HOH X 85 254 100 HOH HOH . 
D 4 HOH X 86 255 105 HOH HOH . 
D 4 HOH X 87 256 106 HOH HOH . 
D 4 HOH X 88 257 108 HOH HOH . 
D 4 HOH X 89 258 109 HOH HOH . 
D 4 HOH X 90 259 111 HOH HOH . 
D 4 HOH X 91 260 112 HOH HOH . 
D 4 HOH X 92 261 113 HOH HOH . 
D 4 HOH X 93 262 114 HOH HOH . 
D 4 HOH X 94 263 115 HOH HOH . 
D 4 HOH X 95 264 117 HOH HOH . 
D 4 HOH X 96 265 118 HOH HOH . 
D 4 HOH X 97 266 119 HOH HOH . 
D 4 HOH X 98 267 120 HOH HOH . 
D 4 HOH X 99 268 121 HOH HOH . 
D 4 HOH X 100 269 122 HOH HOH . 
D 4 HOH X 101 270 125 HOH HOH . 
D 4 HOH X 102 271 128 HOH HOH . 
D 4 HOH X 103 272 129 HOH HOH . 
D 4 HOH X 104 273 131 HOH HOH . 
D 4 HOH X 105 274 133 HOH HOH . 
D 4 HOH X 106 275 135 HOH HOH . 
D 4 HOH X 107 276 136 HOH HOH . 
D 4 HOH X 108 277 137 HOH HOH . 
D 4 HOH X 109 278 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 6.589 31.66 -6.455 1 15.23 ? PA NAP 169 X 1 
HETATM 2 O O1A NAP . . . C 3 6.773 30.413 -5.689 1 15.77 ? O1A NAP 169 X 1 
HETATM 3 O O2A NAP . . . C 3 5.279 32.331 -6.323 1 15.22 ? O2A NAP 169 X 1 
HETATM 4 O O5B NAP . . . C 3 7.721 32.737 -6.083 1 15.71 ? O5B NAP 169 X 1 
HETATM 5 C C5B NAP . . . C 3 9.079 32.389 -6.273 1 16.94 ? C5B NAP 169 X 1 
HETATM 6 C C4B NAP . . . C 3 9.881 33.417 -5.508 1 17.64 ? C4B NAP 169 X 1 
HETATM 7 O O4B NAP . . . C 3 9.625 33.206 -4.131 1 17.69 ? O4B NAP 169 X 1 
HETATM 8 C C3B NAP . . . C 3 11.39 33.281 -5.65 1 18.01 ? C3B NAP 169 X 1 
HETATM 9 O O3B NAP . . . C 3 11.912 33.794 -6.862 1 17.81 ? O3B NAP 169 X 1 
HETATM 10 C C2B NAP . . . C 3 11.824 34.026 -4.399 1 17.79 ? C2B NAP 169 X 1 
HETATM 11 O O2B NAP . . . C 3 11.597 35.405 -4.571 1 16.09 ? O2B NAP 169 X 1 
HETATM 12 C C1B NAP . . . C 3 10.776 33.545 -3.392 1 17.62 ? C1B NAP 169 X 1 
HETATM 13 N N9A NAP . . . C 3 11.254 32.396 -2.61 1 17.93 ? N9A NAP 169 X 1 
HETATM 14 C C8A NAP . . . C 3 10.822 31.085 -2.664 1 17.94 ? C8A NAP 169 X 1 
HETATM 15 N N7A NAP . . . C 3 11.515 30.363 -1.738 1 19.09 ? N7A NAP 169 X 1 
HETATM 16 C C5A NAP . . . C 3 12.384 31.202 -1.111 1 20.09 ? C5A NAP 169 X 1 
HETATM 17 C C6A NAP . . . C 3 13.329 31.025 -0.094 1 21.26 ? C6A NAP 169 X 1 
HETATM 18 N N6A NAP . . . C 3 13.541 29.831 0.45 1 22.26 ? N6A NAP 169 X 1 
HETATM 19 N N1A NAP . . . C 3 14.07 32.119 0.339 1 22.82 ? N1A NAP 169 X 1 
HETATM 20 C C2A NAP . . . C 3 13.867 33.367 -0.194 1 22.17 ? C2A NAP 169 X 1 
HETATM 21 N N3A NAP . . . C 3 12.935 33.544 -1.199 1 21.21 ? N3A NAP 169 X 1 
HETATM 22 C C4A NAP . . . C 3 12.211 32.479 -1.642 1 19.01 ? C4A NAP 169 X 1 
HETATM 23 O O3 NAP . . . C 3 6.984 31.413 -7.992 1 14.87 ? O3 NAP 169 X 1 
HETATM 24 P PN NAP . . . C 3 6.82 30.186 -8.999 1 14.73 ? PN NAP 169 X 1 
HETATM 25 O O1N NAP . . . C 3 7.484 29.011 -8.383 1 15.06 ? O1N NAP 169 X 1 
HETATM 26 O O2N NAP . . . C 3 7.262 30.645 -10.34 1 14.43 ? O2N NAP 169 X 1 
HETATM 27 O O5D NAP . . . C 3 5.224 29.927 -9.02 1 14.55 ? O5D NAP 169 X 1 
HETATM 28 C C5D NAP . . . C 3 4.377 30.883 -9.63 1 13.19 ? C5D NAP 169 X 1 
HETATM 29 C C4D NAP . . . C 3 3.3 30.172 -10.44 1 13.51 ? C4D NAP 169 X 1 
HETATM 30 O O4D NAP . . . C 3 2.429 29.528 -9.51 1 11.11 ? O4D NAP 169 X 1 
HETATM 31 C C3D NAP . . . C 3 2.451 31.168 -11.229 1 14.79 ? C3D NAP 169 X 1 
HETATM 32 O O3D NAP . . . C 3 2.092 30.649 -12.501 1 13.64 ? O3D NAP 169 X 1 
HETATM 33 C C2D NAP . . . C 3 1.188 31.301 -10.411 1 12.2 ? C2D NAP 169 X 1 
HETATM 34 O O2D NAP . . . C 3 0.051 31.612 -11.209 1 14.69 ? O2D NAP 169 X 1 
HETATM 35 C C1D NAP . . . C 3 1.1 29.89 -9.833 1 12.75 ? C1D NAP 169 X 1 
HETATM 36 N N1N NAP . . . C 3 0.316 29.726 -8.606 1 12.56 ? N1N NAP 169 X 1 
HETATM 37 C C2N NAP . . . C 3 -0.662 28.787 -8.654 1 11.35 ? C2N NAP 169 X 1 
HETATM 38 C C3N NAP . . . C 3 -1.437 28.538 -7.544 1 11.41 ? C3N NAP 169 X 1 
HETATM 39 C C7N NAP . . . C 3 -2.491 27.486 -7.631 1 12.74 ? C7N NAP 169 X 1 
HETATM 40 O O7N NAP . . . C 3 -2.913 26.956 -6.45 1 13.1 ? O7N NAP 169 X 1 
HETATM 41 N N7N NAP . . . C 3 -2.997 27.031 -8.787 1 11.89 ? N7N NAP 169 X 1 
HETATM 42 C C4N NAP . . . C 3 -1.168 29.221 -6.345 1 13.08 ? C4N NAP 169 X 1 
HETATM 43 C C5N NAP . . . C 3 -0.147 30.189 -6.304 1 12.87 ? C5N NAP 169 X 1 
HETATM 44 C C6N NAP . . . C 3 0.609 30.43 -7.449 1 12.89 ? C6N NAP 169 X 1 
HETATM 45 P P2B NAP . . . C 3 12.784 36.398 -5.014 1 18.76 ? P2B NAP 169 X 1 
HETATM 46 O O1X NAP . . . C 3 12.199 37.802 -4.952 1 17.68 ? O1X NAP 169 X 1 
HETATM 47 O O2X NAP . . . C 3 13.916 36.195 -4.018 1 17.19 ? O2X NAP 169 X 1 
HETATM 48 O O3X NAP . . . C 3 13.228 36.063 -6.42 1 19.26 ? O3X NAP 169 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#