data_3SRT # _model_server_result.job_id 8HmvPmuNxENNG3142vcDkQ _model_server_result.datetime_utc '2024-11-29 02:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3srt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":191}' # _entry.id 3SRT # _exptl.entry_id 3SRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SRT _cell.length_a 152.884 _cell.length_b 152.884 _cell.length_c 152.884 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,S 1 1,2,3 B,M,N,O,P,Q,R,T 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -76.442 76.442 152.884 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 76.442 152.884 76.442 4 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 5 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 9 A LYS 6 1_555 A N MSE 10 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 10 A MSE 7 1_555 A N LEU 11 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C VAL 103 A VAL 100 1_555 A N MSE 104 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 104 A MSE 101 1_555 A N LEU 105 A LEU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C LYS 9 B LYS 6 1_555 B N MSE 10 B MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C MSE 10 B MSE 7 1_555 B N LEU 11 B LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C VAL 103 B VAL 100 1_555 B N MSE 104 B MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 104 B MSE 101 1_555 B N LEU 105 B LEU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3SRT _atom_sites.fract_transf_matrix[1][1] 0.006541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 186 1 GOL GOL . D 2 GOL A 1 187 3 GOL GOL . E 2 GOL A 1 188 4 GOL GOL . F 2 GOL A 1 189 6 GOL GOL . G 2 GOL A 1 190 10 GOL GOL . H 2 GOL A 1 191 11 GOL GOL . I 2 GOL A 1 192 13 GOL GOL . J 2 GOL A 1 193 14 GOL GOL . K 2 GOL A 1 194 15 GOL GOL . L 2 GOL A 1 195 16 GOL GOL . M 2 GOL B 1 186 2 GOL GOL . N 2 GOL B 1 187 5 GOL GOL . O 2 GOL B 1 188 7 GOL GOL . P 2 GOL B 1 189 8 GOL GOL . Q 2 GOL B 1 190 9 GOL GOL . R 2 GOL B 1 191 12 GOL GOL . S 3 HOH A 1 196 6 HOH HOH . S 3 HOH A 2 197 7 HOH HOH . S 3 HOH A 3 198 8 HOH HOH . S 3 HOH A 4 199 9 HOH HOH . S 3 HOH A 5 200 14 HOH HOH . S 3 HOH A 6 201 15 HOH HOH . S 3 HOH A 7 202 17 HOH HOH . S 3 HOH A 8 203 18 HOH HOH . S 3 HOH A 9 204 19 HOH HOH . S 3 HOH A 10 205 20 HOH HOH . S 3 HOH A 11 206 22 HOH HOH . S 3 HOH A 12 207 27 HOH HOH . S 3 HOH A 13 208 30 HOH HOH . S 3 HOH A 14 209 31 HOH HOH . S 3 HOH A 15 210 33 HOH HOH . S 3 HOH A 16 211 34 HOH HOH . S 3 HOH A 17 212 43 HOH HOH . S 3 HOH A 18 213 47 HOH HOH . S 3 HOH A 19 214 49 HOH HOH . S 3 HOH A 20 215 53 HOH HOH . S 3 HOH A 21 216 54 HOH HOH . S 3 HOH A 22 217 57 HOH HOH . S 3 HOH A 23 218 59 HOH HOH . S 3 HOH A 24 219 61 HOH HOH . S 3 HOH A 25 220 66 HOH HOH . S 3 HOH A 26 221 67 HOH HOH . S 3 HOH A 27 222 68 HOH HOH . S 3 HOH A 28 223 69 HOH HOH . S 3 HOH A 29 224 73 HOH HOH . S 3 HOH A 30 225 75 HOH HOH . S 3 HOH A 31 226 77 HOH HOH . S 3 HOH A 32 227 82 HOH HOH . S 3 HOH A 33 228 83 HOH HOH . S 3 HOH A 34 229 84 HOH HOH . S 3 HOH A 35 230 89 HOH HOH . S 3 HOH A 36 231 91 HOH HOH . S 3 HOH A 37 232 94 HOH HOH . S 3 HOH A 38 233 96 HOH HOH . S 3 HOH A 39 234 103 HOH HOH . S 3 HOH A 40 235 104 HOH HOH . S 3 HOH A 41 236 105 HOH HOH . S 3 HOH A 42 237 112 HOH HOH . S 3 HOH A 43 238 118 HOH HOH . S 3 HOH A 44 239 123 HOH HOH . S 3 HOH A 45 240 124 HOH HOH . S 3 HOH A 46 241 128 HOH HOH . S 3 HOH A 47 242 129 HOH HOH . S 3 HOH A 48 243 147 HOH HOH . S 3 HOH A 49 244 149 HOH HOH . S 3 HOH A 50 245 157 HOH HOH . S 3 HOH A 51 246 160 HOH HOH . T 3 HOH B 1 192 1 HOH HOH . T 3 HOH B 2 193 2 HOH HOH . T 3 HOH B 3 194 4 HOH HOH . T 3 HOH B 4 195 10 HOH HOH . T 3 HOH B 5 196 12 HOH HOH . T 3 HOH B 6 197 21 HOH HOH . T 3 HOH B 7 198 23 HOH HOH . T 3 HOH B 8 199 24 HOH HOH . T 3 HOH B 9 200 26 HOH HOH . T 3 HOH B 10 201 28 HOH HOH . T 3 HOH B 11 202 29 HOH HOH . T 3 HOH B 12 203 32 HOH HOH . T 3 HOH B 13 204 35 HOH HOH . T 3 HOH B 14 205 36 HOH HOH . T 3 HOH B 15 206 38 HOH HOH . T 3 HOH B 16 207 39 HOH HOH . T 3 HOH B 17 208 40 HOH HOH . T 3 HOH B 18 209 41 HOH HOH . T 3 HOH B 19 210 42 HOH HOH . T 3 HOH B 20 211 45 HOH HOH . T 3 HOH B 21 212 46 HOH HOH . T 3 HOH B 22 213 55 HOH HOH . T 3 HOH B 23 214 56 HOH HOH . T 3 HOH B 24 215 58 HOH HOH . T 3 HOH B 25 216 60 HOH HOH . T 3 HOH B 26 217 62 HOH HOH . T 3 HOH B 27 218 63 HOH HOH . T 3 HOH B 28 219 64 HOH HOH . T 3 HOH B 29 220 74 HOH HOH . T 3 HOH B 30 221 76 HOH HOH . T 3 HOH B 31 222 79 HOH HOH . T 3 HOH B 32 223 80 HOH HOH . T 3 HOH B 33 224 81 HOH HOH . T 3 HOH B 34 225 86 HOH HOH . T 3 HOH B 35 226 88 HOH HOH . T 3 HOH B 36 227 90 HOH HOH . T 3 HOH B 37 228 92 HOH HOH . T 3 HOH B 38 229 93 HOH HOH . T 3 HOH B 39 230 95 HOH HOH . T 3 HOH B 40 231 102 HOH HOH . T 3 HOH B 41 232 107 HOH HOH . T 3 HOH B 42 233 133 HOH HOH . T 3 HOH B 43 234 134 HOH HOH . T 3 HOH B 44 235 135 HOH HOH . T 3 HOH B 45 236 139 HOH HOH . T 3 HOH B 46 237 142 HOH HOH . T 3 HOH B 47 238 153 HOH HOH . T 3 HOH B 48 239 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . R 2 81.433 60.5 86.127 1 101.2 ? C1 GOL 191 B 1 HETATM 2 O O1 GOL . . . R 2 81.032 61.732 86.707 1 97.8 ? O1 GOL 191 B 1 HETATM 3 C C2 GOL . . . R 2 80.349 60.049 85.146 1 99.53 ? C2 GOL 191 B 1 HETATM 4 O O2 GOL . . . R 2 79.826 61.202 84.529 1 94.53 ? O2 GOL 191 B 1 HETATM 5 C C3 GOL . . . R 2 80.921 59.129 84.061 1 99.27 ? C3 GOL 191 B 1 HETATM 6 O O3 GOL . . . R 2 79.86 58.615 83.266 1 91.54 ? O3 GOL 191 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #