data_3SRU
#
_model_server_result.job_id            EKBA0J4FrSusP6ez5N1Z1Q 
_model_server_result.datetime_utc      '2025-02-17 21:38:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sru 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":168}' 
#
_entry.id    3SRU 
#
_exptl.entry_id    3SRU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SRU 
_cell.length_a            79.105 
_cell.length_b            79.105 
_cell.length_c            107.095 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SRU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 224 n n 
PA O2A NAP sing 225 n n 
PA O5B NAP sing 226 n n 
PA O3 NAP sing 227 n n 
O2A HOA2 NAP sing 228 n n 
O5B C5B NAP sing 229 n n 
C5B C4B NAP sing 230 n n 
C5B H51A NAP sing 231 n n 
C5B H52A NAP sing 232 n n 
C4B O4B NAP sing 233 n n 
C4B C3B NAP sing 234 n n 
C4B H4B NAP sing 235 n n 
O4B C1B NAP sing 236 n n 
C3B O3B NAP sing 237 n n 
C3B C2B NAP sing 238 n n 
C3B H3B NAP sing 239 n n 
O3B HO3A NAP sing 240 n n 
C2B O2B NAP sing 241 n n 
C2B C1B NAP sing 242 n n 
C2B H2B NAP sing 243 n n 
O2B P2B NAP sing 244 n n 
C1B N9A NAP sing 245 n n 
C1B H1B NAP sing 246 n n 
N9A C8A NAP sing 247 n y 
N9A C4A NAP sing 248 n y 
C8A N7A NAP doub 249 n y 
C8A H8A NAP sing 250 n n 
N7A C5A NAP sing 251 n y 
C5A C6A NAP sing 252 n y 
C5A C4A NAP doub 253 n y 
C6A N6A NAP sing 254 n n 
C6A N1A NAP doub 255 n y 
N6A H61A NAP sing 256 n n 
N6A H62A NAP sing 257 n n 
N1A C2A NAP sing 258 n y 
C2A N3A NAP doub 259 n y 
C2A H2A NAP sing 260 n n 
N3A C4A NAP sing 261 n y 
O3 PN NAP sing 262 n n 
PN O1N NAP doub 263 n n 
PN O2N NAP sing 264 n n 
PN O5D NAP sing 265 n n 
O5D C5D NAP sing 266 n n 
C5D C4D NAP sing 267 n n 
C5D H51N NAP sing 268 n n 
C5D H52N NAP sing 269 n n 
C4D O4D NAP sing 270 n n 
C4D C3D NAP sing 271 n n 
C4D H4D NAP sing 272 n n 
O4D C1D NAP sing 273 n n 
C3D O3D NAP sing 274 n n 
C3D C2D NAP sing 275 n n 
C3D H3D NAP sing 276 n n 
O3D HO3N NAP sing 277 n n 
C2D O2D NAP sing 278 n n 
C2D C1D NAP sing 279 n n 
C2D H2D NAP sing 280 n n 
O2D HO2N NAP sing 281 n n 
C1D N1N NAP sing 282 n n 
C1D H1D NAP sing 283 n n 
N1N C2N NAP sing 284 n y 
N1N C6N NAP doub 285 n y 
C2N C3N NAP doub 286 n y 
C2N H2N NAP sing 287 n n 
C3N C7N NAP sing 288 n n 
C3N C4N NAP sing 289 n y 
C7N O7N NAP doub 290 n n 
C7N N7N NAP sing 291 n n 
N7N H71N NAP sing 292 n n 
N7N H72N NAP sing 293 n n 
C4N C5N NAP doub 294 n y 
C4N H4N NAP sing 295 n n 
C5N C6N NAP sing 296 n y 
C5N H5N NAP sing 297 n n 
C6N H6N NAP sing 298 n n 
P2B O1X NAP doub 299 n n 
P2B O2X NAP sing 300 n n 
P2B O3X NAP sing 301 n n 
O2X HOP2 NAP sing 302 n n 
O3X HOP3 NAP sing 303 n n 
#
_atom_sites.entry_id                     3SRU 
_atom_sites.fract_transf_matrix[1][1]    0.012641 
_atom_sites.fract_transf_matrix[1][2]    0.007299 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 168 160 NAP NAP . 
C 3 Q26 X 1 169 159 Q26 Q26 . 
D 4 HOH X 1 170 1 HOH HOH . 
D 4 HOH X 2 171 2 HOH HOH . 
D 4 HOH X 3 172 4 HOH HOH . 
D 4 HOH X 4 173 5 HOH HOH . 
D 4 HOH X 5 174 6 HOH HOH . 
D 4 HOH X 6 175 7 HOH HOH . 
D 4 HOH X 7 176 8 HOH HOH . 
D 4 HOH X 8 177 9 HOH HOH . 
D 4 HOH X 9 178 10 HOH HOH . 
D 4 HOH X 10 179 11 HOH HOH . 
D 4 HOH X 11 180 12 HOH HOH . 
D 4 HOH X 12 181 13 HOH HOH . 
D 4 HOH X 13 182 14 HOH HOH . 
D 4 HOH X 14 183 15 HOH HOH . 
D 4 HOH X 15 184 16 HOH HOH . 
D 4 HOH X 16 185 17 HOH HOH . 
D 4 HOH X 17 186 19 HOH HOH . 
D 4 HOH X 18 187 21 HOH HOH . 
D 4 HOH X 19 188 22 HOH HOH . 
D 4 HOH X 20 189 23 HOH HOH . 
D 4 HOH X 21 190 24 HOH HOH . 
D 4 HOH X 22 191 25 HOH HOH . 
D 4 HOH X 23 192 26 HOH HOH . 
D 4 HOH X 24 193 27 HOH HOH . 
D 4 HOH X 25 194 28 HOH HOH . 
D 4 HOH X 26 195 29 HOH HOH . 
D 4 HOH X 27 196 30 HOH HOH . 
D 4 HOH X 28 197 31 HOH HOH . 
D 4 HOH X 29 198 32 HOH HOH . 
D 4 HOH X 30 199 33 HOH HOH . 
D 4 HOH X 31 200 34 HOH HOH . 
D 4 HOH X 32 201 35 HOH HOH . 
D 4 HOH X 33 202 36 HOH HOH . 
D 4 HOH X 34 203 37 HOH HOH . 
D 4 HOH X 35 204 38 HOH HOH . 
D 4 HOH X 36 205 39 HOH HOH . 
D 4 HOH X 37 206 40 HOH HOH . 
D 4 HOH X 38 207 41 HOH HOH . 
D 4 HOH X 39 208 42 HOH HOH . 
D 4 HOH X 40 209 43 HOH HOH . 
D 4 HOH X 41 210 44 HOH HOH . 
D 4 HOH X 42 211 45 HOH HOH . 
D 4 HOH X 43 212 46 HOH HOH . 
D 4 HOH X 44 213 47 HOH HOH . 
D 4 HOH X 45 214 48 HOH HOH . 
D 4 HOH X 46 215 49 HOH HOH . 
D 4 HOH X 47 216 50 HOH HOH . 
D 4 HOH X 48 217 51 HOH HOH . 
D 4 HOH X 49 218 52 HOH HOH . 
D 4 HOH X 50 219 53 HOH HOH . 
D 4 HOH X 51 220 54 HOH HOH . 
D 4 HOH X 52 221 55 HOH HOH . 
D 4 HOH X 53 222 56 HOH HOH . 
D 4 HOH X 54 223 57 HOH HOH . 
D 4 HOH X 55 224 58 HOH HOH . 
D 4 HOH X 56 225 59 HOH HOH . 
D 4 HOH X 57 226 60 HOH HOH . 
D 4 HOH X 58 227 61 HOH HOH . 
D 4 HOH X 59 228 63 HOH HOH . 
D 4 HOH X 60 229 64 HOH HOH . 
D 4 HOH X 61 230 65 HOH HOH . 
D 4 HOH X 62 231 66 HOH HOH . 
D 4 HOH X 63 232 67 HOH HOH . 
D 4 HOH X 64 233 68 HOH HOH . 
D 4 HOH X 65 234 69 HOH HOH . 
D 4 HOH X 66 235 70 HOH HOH . 
D 4 HOH X 67 236 71 HOH HOH . 
D 4 HOH X 68 237 72 HOH HOH . 
D 4 HOH X 69 238 73 HOH HOH . 
D 4 HOH X 70 239 75 HOH HOH . 
D 4 HOH X 71 240 77 HOH HOH . 
D 4 HOH X 72 241 78 HOH HOH . 
D 4 HOH X 73 242 80 HOH HOH . 
D 4 HOH X 74 243 82 HOH HOH . 
D 4 HOH X 75 244 83 HOH HOH . 
D 4 HOH X 76 245 84 HOH HOH . 
D 4 HOH X 77 246 86 HOH HOH . 
D 4 HOH X 78 247 87 HOH HOH . 
D 4 HOH X 79 248 88 HOH HOH . 
D 4 HOH X 80 249 89 HOH HOH . 
D 4 HOH X 81 250 90 HOH HOH . 
D 4 HOH X 82 251 93 HOH HOH . 
D 4 HOH X 83 252 95 HOH HOH . 
D 4 HOH X 84 253 96 HOH HOH . 
D 4 HOH X 85 254 97 HOH HOH . 
D 4 HOH X 86 255 98 HOH HOH . 
D 4 HOH X 87 256 100 HOH HOH . 
D 4 HOH X 88 257 104 HOH HOH . 
D 4 HOH X 89 258 105 HOH HOH . 
D 4 HOH X 90 259 109 HOH HOH . 
D 4 HOH X 91 260 110 HOH HOH . 
D 4 HOH X 92 261 111 HOH HOH . 
D 4 HOH X 93 262 114 HOH HOH . 
D 4 HOH X 94 263 115 HOH HOH . 
D 4 HOH X 95 264 116 HOH HOH . 
D 4 HOH X 96 265 117 HOH HOH . 
D 4 HOH X 97 266 118 HOH HOH . 
D 4 HOH X 98 267 119 HOH HOH . 
D 4 HOH X 99 268 120 HOH HOH . 
D 4 HOH X 100 269 121 HOH HOH . 
D 4 HOH X 101 270 122 HOH HOH . 
D 4 HOH X 102 271 123 HOH HOH . 
D 4 HOH X 103 272 125 HOH HOH . 
D 4 HOH X 104 273 126 HOH HOH . 
D 4 HOH X 105 274 127 HOH HOH . 
D 4 HOH X 106 275 128 HOH HOH . 
D 4 HOH X 107 276 129 HOH HOH . 
D 4 HOH X 108 277 130 HOH HOH . 
D 4 HOH X 109 278 131 HOH HOH . 
D 4 HOH X 110 279 132 HOH HOH . 
D 4 HOH X 111 280 134 HOH HOH . 
D 4 HOH X 112 281 135 HOH HOH . 
D 4 HOH X 113 282 136 HOH HOH . 
D 4 HOH X 114 283 137 HOH HOH . 
D 4 HOH X 115 284 138 HOH HOH . 
D 4 HOH X 116 285 139 HOH HOH . 
D 4 HOH X 117 286 140 HOH HOH . 
D 4 HOH X 118 287 141 HOH HOH . 
D 4 HOH X 119 288 143 HOH HOH . 
D 4 HOH X 120 289 144 HOH HOH . 
D 4 HOH X 121 290 145 HOH HOH . 
D 4 HOH X 122 291 146 HOH HOH . 
D 4 HOH X 123 292 147 HOH HOH . 
D 4 HOH X 124 293 148 HOH HOH . 
D 4 HOH X 125 294 149 HOH HOH . 
D 4 HOH X 126 295 150 HOH HOH . 
D 4 HOH X 127 296 151 HOH HOH . 
D 4 HOH X 128 297 152 HOH HOH . 
D 4 HOH X 129 298 153 HOH HOH . 
D 4 HOH X 130 299 154 HOH HOH . 
D 4 HOH X 131 300 155 HOH HOH . 
D 4 HOH X 132 301 156 HOH HOH . 
D 4 HOH X 133 302 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 6.67 31.485 -6.398 1 14.71 ? PA NAP 168 X 1 
HETATM 2 O O1A NAP . . . B 2 6.845 30.23 -5.634 1 15.19 ? O1A NAP 168 X 1 
HETATM 3 O O2A NAP . . . B 2 5.367 32.168 -6.263 1 13.99 ? O2A NAP 168 X 1 
HETATM 4 O O5B NAP . . . B 2 7.786 32.568 -6.02 1 15 ? O5B NAP 168 X 1 
HETATM 5 C C5B NAP . . . B 2 9.145 32.248 -6.254 1 16.25 ? C5B NAP 168 X 1 
HETATM 6 C C4B NAP . . . B 2 9.949 33.247 -5.455 1 15.74 ? C4B NAP 168 X 1 
HETATM 7 O O4B NAP . . . B 2 9.688 33.042 -4.077 1 15.7 ? O4B NAP 168 X 1 
HETATM 8 C C3B NAP . . . B 2 11.459 33.103 -5.599 1 16.4 ? C3B NAP 168 X 1 
HETATM 9 O O3B NAP . . . B 2 11.981 33.632 -6.8 1 15.52 ? O3B NAP 168 X 1 
HETATM 10 C C2B NAP . . . B 2 11.882 33.863 -4.356 1 16.13 ? C2B NAP 168 X 1 
HETATM 11 O O2B NAP . . . B 2 11.658 35.242 -4.542 1 15.71 ? O2B NAP 168 X 1 
HETATM 12 C C1B NAP . . . B 2 10.836 33.373 -3.342 1 15.83 ? C1B NAP 168 X 1 
HETATM 13 N N9A NAP . . . B 2 11.312 32.22 -2.56 1 16.8 ? N9A NAP 168 X 1 
HETATM 14 C C8A NAP . . . B 2 10.903 30.906 -2.614 1 16.34 ? C8A NAP 168 X 1 
HETATM 15 N N7A NAP . . . B 2 11.608 30.191 -1.704 1 16.89 ? N7A NAP 168 X 1 
HETATM 16 C C5A NAP . . . B 2 12.464 31.038 -1.059 1 17.73 ? C5A NAP 168 X 1 
HETATM 17 C C6A NAP . . . B 2 13.411 30.868 -0.037 1 18.95 ? C6A NAP 168 X 1 
HETATM 18 N N6A NAP . . . B 2 13.644 29.678 0.517 1 19.91 ? N6A NAP 168 X 1 
HETATM 19 N N1A NAP . . . B 2 14.136 31.975 0.399 1 20.2 ? N1A NAP 168 X 1 
HETATM 20 C C2A NAP . . . B 2 13.909 33.212 -0.145 1 19.2 ? C2A NAP 168 X 1 
HETATM 21 N N3A NAP . . . B 2 12.981 33.381 -1.154 1 19.44 ? N3A NAP 168 X 1 
HETATM 22 C C4A NAP . . . B 2 12.272 32.31 -1.594 1 16.96 ? C4A NAP 168 X 1 
HETATM 23 O O3 NAP . . . B 2 7.079 31.264 -7.926 1 13.62 ? O3 NAP 168 X 1 
HETATM 24 P PN NAP . . . B 2 6.874 30.058 -8.95 1 13.46 ? PN NAP 168 X 1 
HETATM 25 O O1N NAP . . . B 2 7.515 28.859 -8.364 1 13.88 ? O1N NAP 168 X 1 
HETATM 26 O O2N NAP . . . B 2 7.346 30.513 -10.298 1 13.21 ? O2N NAP 168 X 1 
HETATM 27 O O5D NAP . . . B 2 5.285 29.794 -9.016 1 13.36 ? O5D NAP 168 X 1 
HETATM 28 C C5D NAP . . . B 2 4.446 30.767 -9.623 1 12.67 ? C5D NAP 168 X 1 
HETATM 29 C C4D NAP . . . B 2 3.339 30.076 -10.415 1 12.36 ? C4D NAP 168 X 1 
HETATM 30 O O4D NAP . . . B 2 2.467 29.428 -9.491 1 9.98 ? O4D NAP 168 X 1 
HETATM 31 C C3D NAP . . . B 2 2.496 31.075 -11.204 1 13.56 ? C3D NAP 168 X 1 
HETATM 32 O O3D NAP . . . B 2 2.137 30.572 -12.487 1 12.47 ? O3D NAP 168 X 1 
HETATM 33 C C2D NAP . . . B 2 1.231 31.187 -10.4 1 10.28 ? C2D NAP 168 X 1 
HETATM 34 O O2D NAP . . . B 2 0.109 31.502 -11.216 1 12.82 ? O2D NAP 168 X 1 
HETATM 35 C C1D NAP . . . B 2 1.142 29.784 -9.827 1 10.73 ? C1D NAP 168 X 1 
HETATM 36 N N1N NAP . . . B 2 0.412 29.623 -8.585 1 10.53 ? N1N NAP 168 X 1 
HETATM 37 C C2N NAP . . . B 2 -0.575 28.701 -8.638 1 9.81 ? C2N NAP 168 X 1 
HETATM 38 C C3N NAP . . . B 2 -1.317 28.43 -7.509 1 8.49 ? C3N NAP 168 X 1 
HETATM 39 C C7N NAP . . . B 2 -2.397 27.414 -7.604 1 10.17 ? C7N NAP 168 X 1 
HETATM 40 O O7N NAP . . . B 2 -2.809 26.902 -6.411 1 10.54 ? O7N NAP 168 X 1 
HETATM 41 N N7N NAP . . . B 2 -2.932 26.991 -8.769 1 9.9 ? N7N NAP 168 X 1 
HETATM 42 C C4N NAP . . . B 2 -1 29.084 -6.304 1 11.67 ? C4N NAP 168 X 1 
HETATM 43 C C5N NAP . . . B 2 0.039 30.027 -6.272 1 11.44 ? C5N NAP 168 X 1 
HETATM 44 C C6N NAP . . . B 2 0.749 30.298 -7.428 1 11.15 ? C6N NAP 168 X 1 
HETATM 45 P P2B NAP . . . B 2 12.817 36.263 -5.011 1 18.54 ? P2B NAP 168 X 1 
HETATM 46 O O1X NAP . . . B 2 12.242 37.662 -4.932 1 16.9 ? O1X NAP 168 X 1 
HETATM 47 O O2X NAP . . . B 2 13.918 36.096 -3.974 1 14.33 ? O2X NAP 168 X 1 
HETATM 48 O O3X NAP . . . B 2 13.308 35.897 -6.411 1 18.47 ? O3X NAP 168 X 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#