data_3SRX
#
_model_server_result.job_id            q8q3WfxC-Zcvxq8Hertb9Q 
_model_server_result.datetime_utc      '2024-10-19 01:39:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3srx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":271}' 
#
_entry.id    3SRX 
#
_exptl.entry_id    3SRX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SRX 
_cell.length_a            108.945 
_cell.length_b            108.945 
_cell.length_c            237.883 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,Q 1 1 
B,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 120 1_555 D CD CD . A CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 A ND1 HIS 89 A HIS 122 1_555 D CD CD . A CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc3 A OD2 ASP 91 A ASP 124 1_555 C CD CD . A CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc4 A OE2 GLU 119 A GLU 152 1_555 E CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc5 A OE1 GLU 119 A GLU 152 1_555 E CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc6 A NE2 HIS 156 A HIS 189 1_555 D CD CD . A CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc7 A SG CYS 175 A CYS 208 1_555 C CD CD . A CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc8 A SG CYS 175 A CYS 208 1_555 D CD CD . A CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc9 A OD2 ASP 190 A ASP 223 1_555 E CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc10 A OD1 ASP 190 A ASP 223 1_555 E CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc11 A NE2 HIS 217 A HIS 250 1_555 C CD CD . A CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc12 E CD CD . A CD 282 1_555 Q O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc13 B NE2 HIS 87 B HIS 120 1_555 K CD CD . B CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc14 B ND1 HIS 89 B HIS 122 1_555 K CD CD . B CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc15 B OD2 ASP 91 B ASP 124 1_555 K CD CD . B CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc16 B NE2 HIS 156 B HIS 189 1_555 K CD CD . B CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc17 B SG CYS 175 B CYS 208 1_555 K CD CD . B CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc18 B SG CYS 175 B CYS 208 1_555 L CD CD . B CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc19 B OD1 ASP 190 B ASP 223 1_555 M CD CD . B CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc20 B NE2 HIS 217 B HIS 250 1_555 L CD CD . B CD 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc21 R O HOH . B HOH 277 1_555 M CD CD . B CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3SRX 
_atom_sites.fract_transf_matrix[1][1]    0.009179 
_atom_sites.fract_transf_matrix[1][2]    0.005299 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010599 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004204 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 280 280 CD CD . 
D 2 CD A 1 281 281 CD CD . 
E 2 CD A 1 282 282 CD CD . 
F 3 GOL A 1 283 283 GOL GOL . 
G 4 CL A 1 284 284 CL CL . 
H 4 CL A 1 285 285 CL CL . 
I 3 GOL A 1 271 283 GOL GOL . 
J 5 SCN B 1 286 286 SCN SCN . 
K 2 CD B 1 280 280 CD CD . 
L 2 CD B 1 281 281 CD CD . 
M 2 CD B 1 282 282 CD CD . 
N 3 GOL B 1 284 284 GOL GOL . 
O 4 CL B 1 285 285 CL CL . 
P 4 CL B 1 271 286 CL CL . 
Q 6 HOH A 1 1 1 HOH HOH . 
Q 6 HOH A 2 2 2 HOH HOH . 
Q 6 HOH A 3 3 3 HOH HOH . 
Q 6 HOH A 4 4 4 HOH HOH . 
Q 6 HOH A 5 5 5 HOH HOH . 
Q 6 HOH A 6 6 6 HOH HOH . 
Q 6 HOH A 7 7 7 HOH HOH . 
Q 6 HOH A 8 13 13 HOH HOH . 
Q 6 HOH A 9 14 14 HOH HOH . 
Q 6 HOH A 10 15 15 HOH HOH . 
Q 6 HOH A 11 16 16 HOH HOH . 
Q 6 HOH A 12 17 17 HOH HOH . 
Q 6 HOH A 13 19 19 HOH HOH . 
Q 6 HOH A 14 20 20 HOH HOH . 
Q 6 HOH A 15 21 21 HOH HOH . 
Q 6 HOH A 16 22 22 HOH HOH . 
Q 6 HOH A 17 23 23 HOH HOH . 
Q 6 HOH A 18 25 25 HOH HOH . 
Q 6 HOH A 19 27 27 HOH HOH . 
Q 6 HOH A 20 28 28 HOH HOH . 
Q 6 HOH A 21 29 29 HOH HOH . 
Q 6 HOH A 22 31 31 HOH HOH . 
Q 6 HOH A 23 32 32 HOH HOH . 
Q 6 HOH A 24 272 35 HOH HOH . 
Q 6 HOH A 25 273 36 HOH HOH . 
Q 6 HOH A 26 274 37 HOH HOH . 
Q 6 HOH A 27 275 38 HOH HOH . 
Q 6 HOH A 28 276 39 HOH HOH . 
Q 6 HOH A 29 277 40 HOH HOH . 
Q 6 HOH A 30 278 41 HOH HOH . 
Q 6 HOH A 31 279 42 HOH HOH . 
Q 6 HOH A 32 286 43 HOH HOH . 
Q 6 HOH A 33 287 44 HOH HOH . 
Q 6 HOH A 34 288 45 HOH HOH . 
Q 6 HOH A 35 289 46 HOH HOH . 
Q 6 HOH A 36 290 47 HOH HOH . 
Q 6 HOH A 37 291 50 HOH HOH . 
Q 6 HOH A 38 292 51 HOH HOH . 
Q 6 HOH A 39 293 52 HOH HOH . 
Q 6 HOH A 40 294 53 HOH HOH . 
Q 6 HOH A 41 295 54 HOH HOH . 
Q 6 HOH A 42 296 55 HOH HOH . 
Q 6 HOH A 43 297 57 HOH HOH . 
Q 6 HOH A 44 298 58 HOH HOH . 
Q 6 HOH A 45 299 59 HOH HOH . 
Q 6 HOH A 46 300 60 HOH HOH . 
Q 6 HOH A 47 301 61 HOH HOH . 
Q 6 HOH A 48 302 62 HOH HOH . 
Q 6 HOH A 49 303 64 HOH HOH . 
Q 6 HOH A 50 304 65 HOH HOH . 
Q 6 HOH A 51 305 66 HOH HOH . 
Q 6 HOH A 52 306 67 HOH HOH . 
Q 6 HOH A 53 307 68 HOH HOH . 
Q 6 HOH A 54 308 69 HOH HOH . 
Q 6 HOH A 55 309 72 HOH HOH . 
Q 6 HOH A 56 310 73 HOH HOH . 
Q 6 HOH A 57 311 76 HOH HOH . 
Q 6 HOH A 58 312 77 HOH HOH . 
Q 6 HOH A 59 313 78 HOH HOH . 
Q 6 HOH A 60 314 79 HOH HOH . 
Q 6 HOH A 61 315 80 HOH HOH . 
Q 6 HOH A 62 316 81 HOH HOH . 
Q 6 HOH A 63 317 82 HOH HOH . 
Q 6 HOH A 64 318 83 HOH HOH . 
Q 6 HOH A 65 319 84 HOH HOH . 
Q 6 HOH A 66 320 85 HOH HOH . 
Q 6 HOH A 67 321 86 HOH HOH . 
Q 6 HOH A 68 322 87 HOH HOH . 
Q 6 HOH A 69 323 88 HOH HOH . 
Q 6 HOH A 70 324 89 HOH HOH . 
Q 6 HOH A 71 325 90 HOH HOH . 
Q 6 HOH A 72 326 91 HOH HOH . 
Q 6 HOH A 73 327 92 HOH HOH . 
Q 6 HOH A 74 328 93 HOH HOH . 
Q 6 HOH A 75 329 100 HOH HOH . 
Q 6 HOH A 76 330 101 HOH HOH . 
Q 6 HOH A 77 331 102 HOH HOH . 
Q 6 HOH A 78 332 103 HOH HOH . 
Q 6 HOH A 79 333 105 HOH HOH . 
Q 6 HOH A 80 334 107 HOH HOH . 
Q 6 HOH A 81 335 108 HOH HOH . 
Q 6 HOH A 82 336 109 HOH HOH . 
Q 6 HOH A 83 337 110 HOH HOH . 
Q 6 HOH A 84 338 111 HOH HOH . 
Q 6 HOH A 85 339 112 HOH HOH . 
Q 6 HOH A 86 340 114 HOH HOH . 
Q 6 HOH A 87 341 115 HOH HOH . 
Q 6 HOH A 88 342 116 HOH HOH . 
R 6 HOH B 1 8 8 HOH HOH . 
R 6 HOH B 2 9 9 HOH HOH . 
R 6 HOH B 3 10 10 HOH HOH . 
R 6 HOH B 4 11 11 HOH HOH . 
R 6 HOH B 5 12 12 HOH HOH . 
R 6 HOH B 6 18 18 HOH HOH . 
R 6 HOH B 7 24 24 HOH HOH . 
R 6 HOH B 8 26 26 HOH HOH . 
R 6 HOH B 9 30 30 HOH HOH . 
R 6 HOH B 10 33 33 HOH HOH . 
R 6 HOH B 11 272 34 HOH HOH . 
R 6 HOH B 12 273 48 HOH HOH . 
R 6 HOH B 13 274 49 HOH HOH . 
R 6 HOH B 14 275 56 HOH HOH . 
R 6 HOH B 15 276 63 HOH HOH . 
R 6 HOH B 16 277 70 HOH HOH . 
R 6 HOH B 17 278 71 HOH HOH . 
R 6 HOH B 18 279 74 HOH HOH . 
R 6 HOH B 19 283 75 HOH HOH . 
R 6 HOH B 20 287 94 HOH HOH . 
R 6 HOH B 21 288 95 HOH HOH . 
R 6 HOH B 22 289 96 HOH HOH . 
R 6 HOH B 23 290 97 HOH HOH . 
R 6 HOH B 24 291 98 HOH HOH . 
R 6 HOH B 25 292 99 HOH HOH . 
R 6 HOH B 26 293 104 HOH HOH . 
R 6 HOH B 27 294 106 HOH HOH . 
R 6 HOH B 28 295 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 54.937 -12.698 24.602 1 82.96 ? C1 GOL 271 A 1 
HETATM 2 O O1 GOL . . . I 3 53.656 -13.273 24.757 1 80.2 ? O1 GOL 271 A 1 
HETATM 3 C C2 GOL . . . I 3 55.627 -12.547 25.958 1 88.46 ? C2 GOL 271 A 1 
HETATM 4 O O2 GOL . . . I 3 55.586 -13.772 26.666 1 90.71 ? O2 GOL 271 A 1 
HETATM 5 C C3 GOL . . . I 3 57.074 -12.078 25.774 1 89.18 ? C3 GOL 271 A 1 
HETATM 6 O O3 GOL . . . I 3 57.651 -11.782 27.03 1 88.25 ? O3 GOL 271 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#