data_3SS5 # _model_server_result.job_id 6hrWALLYzW9-Adwd24Itpg _model_server_result.datetime_utc '2024-11-15 23:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ss5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 3SS5 # _exptl.entry_id 3SS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.77 _cell.angle_gamma 90 _cell.entry_id 3SS5 _cell.length_a 50.38 _cell.length_b 139.43 _cell.length_c 178.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 3SS5 _atom_sites.fract_transf_matrix[1][1] 0.019849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001308 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GLU A 1 1 1 GLU GLU . F 2 GLU B 1 1 1 GLU GLU . G 2 GLU C 1 1 1 GLU GLU . H 2 GLU D 1 1 1 GLU GLU . I 3 HOH A 1 2 2 HOH HOH . I 3 HOH A 2 3 3 HOH HOH . I 3 HOH A 3 4 4 HOH HOH . I 3 HOH A 4 5 5 HOH HOH . I 3 HOH A 5 6 6 HOH HOH . I 3 HOH A 6 7 7 HOH HOH . I 3 HOH A 7 8 8 HOH HOH . I 3 HOH A 8 16 16 HOH HOH . I 3 HOH A 9 17 17 HOH HOH . I 3 HOH A 10 19 19 HOH HOH . I 3 HOH A 11 20 20 HOH HOH . I 3 HOH A 12 21 21 HOH HOH . I 3 HOH A 13 33 33 HOH HOH . I 3 HOH A 14 34 34 HOH HOH . I 3 HOH A 15 37 37 HOH HOH . I 3 HOH A 16 54 54 HOH HOH . I 3 HOH A 17 55 55 HOH HOH . I 3 HOH A 18 57 57 HOH HOH . I 3 HOH A 19 59 59 HOH HOH . I 3 HOH A 20 64 64 HOH HOH . I 3 HOH A 21 68 68 HOH HOH . I 3 HOH A 22 73 73 HOH HOH . I 3 HOH A 23 81 81 HOH HOH . I 3 HOH A 24 84 84 HOH HOH . I 3 HOH A 25 92 92 HOH HOH . I 3 HOH A 26 94 94 HOH HOH . I 3 HOH A 27 95 95 HOH HOH . I 3 HOH A 28 100 100 HOH HOH . I 3 HOH A 29 101 101 HOH HOH . I 3 HOH A 30 106 106 HOH HOH . I 3 HOH A 31 108 108 HOH HOH . I 3 HOH A 32 112 112 HOH HOH . I 3 HOH A 33 118 118 HOH HOH . I 3 HOH A 34 604 1 HOH HOH . I 3 HOH A 35 605 125 HOH HOH . I 3 HOH A 36 606 126 HOH HOH . I 3 HOH A 37 607 130 HOH HOH . I 3 HOH A 38 608 132 HOH HOH . I 3 HOH A 39 609 134 HOH HOH . I 3 HOH A 40 610 135 HOH HOH . I 3 HOH A 41 611 141 HOH HOH . I 3 HOH A 42 612 144 HOH HOH . I 3 HOH A 43 613 149 HOH HOH . I 3 HOH A 44 614 158 HOH HOH . I 3 HOH A 45 615 159 HOH HOH . I 3 HOH A 46 616 160 HOH HOH . I 3 HOH A 47 617 162 HOH HOH . I 3 HOH A 48 618 166 HOH HOH . I 3 HOH A 49 619 170 HOH HOH . I 3 HOH A 50 620 171 HOH HOH . I 3 HOH A 51 621 174 HOH HOH . I 3 HOH A 52 622 177 HOH HOH . I 3 HOH A 53 623 178 HOH HOH . I 3 HOH A 54 624 181 HOH HOH . I 3 HOH A 55 625 183 HOH HOH . I 3 HOH A 56 626 184 HOH HOH . I 3 HOH A 57 627 187 HOH HOH . I 3 HOH A 58 628 188 HOH HOH . I 3 HOH A 59 629 192 HOH HOH . I 3 HOH A 60 630 203 HOH HOH . I 3 HOH A 61 631 204 HOH HOH . I 3 HOH A 62 632 208 HOH HOH . I 3 HOH A 63 633 209 HOH HOH . I 3 HOH A 64 634 210 HOH HOH . I 3 HOH A 65 635 213 HOH HOH . J 3 HOH B 1 9 9 HOH HOH . J 3 HOH B 2 10 10 HOH HOH . J 3 HOH B 3 11 11 HOH HOH . J 3 HOH B 4 12 12 HOH HOH . J 3 HOH B 5 22 22 HOH HOH . J 3 HOH B 6 26 26 HOH HOH . J 3 HOH B 7 27 27 HOH HOH . J 3 HOH B 8 38 38 HOH HOH . J 3 HOH B 9 44 44 HOH HOH . J 3 HOH B 10 46 46 HOH HOH . J 3 HOH B 11 48 48 HOH HOH . J 3 HOH B 12 49 49 HOH HOH . J 3 HOH B 13 51 51 HOH HOH . J 3 HOH B 14 52 52 HOH HOH . J 3 HOH B 15 56 56 HOH HOH . J 3 HOH B 16 60 60 HOH HOH . J 3 HOH B 17 62 62 HOH HOH . J 3 HOH B 18 67 67 HOH HOH . J 3 HOH B 19 70 70 HOH HOH . J 3 HOH B 20 74 74 HOH HOH . J 3 HOH B 21 75 75 HOH HOH . J 3 HOH B 22 77 77 HOH HOH . J 3 HOH B 23 82 82 HOH HOH . J 3 HOH B 24 86 86 HOH HOH . J 3 HOH B 25 90 90 HOH HOH . J 3 HOH B 26 91 91 HOH HOH . J 3 HOH B 27 98 98 HOH HOH . J 3 HOH B 28 104 104 HOH HOH . J 3 HOH B 29 107 107 HOH HOH . J 3 HOH B 30 113 113 HOH HOH . J 3 HOH B 31 116 116 HOH HOH . J 3 HOH B 32 120 120 HOH HOH . J 3 HOH B 33 604 127 HOH HOH . J 3 HOH B 34 605 139 HOH HOH . J 3 HOH B 35 606 142 HOH HOH . J 3 HOH B 36 607 146 HOH HOH . J 3 HOH B 37 608 147 HOH HOH . J 3 HOH B 38 609 150 HOH HOH . J 3 HOH B 39 610 151 HOH HOH . J 3 HOH B 40 611 153 HOH HOH . J 3 HOH B 41 612 163 HOH HOH . J 3 HOH B 42 613 164 HOH HOH . J 3 HOH B 43 614 165 HOH HOH . J 3 HOH B 44 615 167 HOH HOH . J 3 HOH B 45 616 168 HOH HOH . J 3 HOH B 46 617 169 HOH HOH . J 3 HOH B 47 618 173 HOH HOH . J 3 HOH B 48 619 175 HOH HOH . J 3 HOH B 49 620 176 HOH HOH . J 3 HOH B 50 621 179 HOH HOH . J 3 HOH B 51 622 180 HOH HOH . J 3 HOH B 52 623 186 HOH HOH . J 3 HOH B 53 624 193 HOH HOH . J 3 HOH B 54 625 199 HOH HOH . J 3 HOH B 55 626 211 HOH HOH . J 3 HOH B 56 627 215 HOH HOH . K 3 HOH C 1 13 13 HOH HOH . K 3 HOH C 2 14 14 HOH HOH . K 3 HOH C 3 15 15 HOH HOH . K 3 HOH C 4 23 23 HOH HOH . K 3 HOH C 5 28 28 HOH HOH . K 3 HOH C 6 29 29 HOH HOH . K 3 HOH C 7 30 30 HOH HOH . K 3 HOH C 8 31 31 HOH HOH . K 3 HOH C 9 32 32 HOH HOH . K 3 HOH C 10 39 39 HOH HOH . K 3 HOH C 11 40 40 HOH HOH . K 3 HOH C 12 41 41 HOH HOH . K 3 HOH C 13 45 45 HOH HOH . K 3 HOH C 14 53 53 HOH HOH . K 3 HOH C 15 61 61 HOH HOH . K 3 HOH C 16 63 63 HOH HOH . K 3 HOH C 17 65 65 HOH HOH . K 3 HOH C 18 66 66 HOH HOH . K 3 HOH C 19 83 83 HOH HOH . K 3 HOH C 20 88 88 HOH HOH . K 3 HOH C 21 96 96 HOH HOH . K 3 HOH C 22 102 102 HOH HOH . K 3 HOH C 23 110 110 HOH HOH . K 3 HOH C 24 114 114 HOH HOH . K 3 HOH C 25 115 115 HOH HOH . K 3 HOH C 26 119 119 HOH HOH . K 3 HOH C 27 604 128 HOH HOH . K 3 HOH C 28 605 133 HOH HOH . K 3 HOH C 29 606 137 HOH HOH . K 3 HOH C 30 607 138 HOH HOH . K 3 HOH C 31 608 140 HOH HOH . K 3 HOH C 32 609 148 HOH HOH . K 3 HOH C 33 610 154 HOH HOH . K 3 HOH C 34 611 155 HOH HOH . K 3 HOH C 35 612 156 HOH HOH . K 3 HOH C 36 613 185 HOH HOH . K 3 HOH C 37 614 196 HOH HOH . K 3 HOH C 38 615 198 HOH HOH . K 3 HOH C 39 616 200 HOH HOH . K 3 HOH C 40 617 201 HOH HOH . K 3 HOH C 41 618 202 HOH HOH . K 3 HOH C 42 619 205 HOH HOH . K 3 HOH C 43 620 206 HOH HOH . L 3 HOH D 1 18 18 HOH HOH . L 3 HOH D 2 24 24 HOH HOH . L 3 HOH D 3 25 25 HOH HOH . L 3 HOH D 4 35 35 HOH HOH . L 3 HOH D 5 36 36 HOH HOH . L 3 HOH D 6 42 42 HOH HOH . L 3 HOH D 7 43 43 HOH HOH . L 3 HOH D 8 47 47 HOH HOH . L 3 HOH D 9 50 50 HOH HOH . L 3 HOH D 10 58 58 HOH HOH . L 3 HOH D 11 69 69 HOH HOH . L 3 HOH D 12 71 71 HOH HOH . L 3 HOH D 13 72 72 HOH HOH . L 3 HOH D 14 76 76 HOH HOH . L 3 HOH D 15 78 78 HOH HOH . L 3 HOH D 16 79 79 HOH HOH . L 3 HOH D 17 80 80 HOH HOH . L 3 HOH D 18 85 85 HOH HOH . L 3 HOH D 19 87 87 HOH HOH . L 3 HOH D 20 89 89 HOH HOH . L 3 HOH D 21 93 93 HOH HOH . L 3 HOH D 22 97 97 HOH HOH . L 3 HOH D 23 99 99 HOH HOH . L 3 HOH D 24 103 103 HOH HOH . L 3 HOH D 25 105 105 HOH HOH . L 3 HOH D 26 109 109 HOH HOH . L 3 HOH D 27 111 111 HOH HOH . L 3 HOH D 28 117 117 HOH HOH . L 3 HOH D 29 121 121 HOH HOH . L 3 HOH D 30 122 122 HOH HOH . L 3 HOH D 31 123 123 HOH HOH . L 3 HOH D 32 124 124 HOH HOH . L 3 HOH D 33 604 129 HOH HOH . L 3 HOH D 34 605 131 HOH HOH . L 3 HOH D 35 606 136 HOH HOH . L 3 HOH D 36 607 143 HOH HOH . L 3 HOH D 37 608 152 HOH HOH . L 3 HOH D 38 609 157 HOH HOH . L 3 HOH D 39 610 161 HOH HOH . L 3 HOH D 40 611 172 HOH HOH . L 3 HOH D 41 612 182 HOH HOH . L 3 HOH D 42 613 189 HOH HOH . L 3 HOH D 43 614 190 HOH HOH . L 3 HOH D 44 615 191 HOH HOH . L 3 HOH D 45 616 194 HOH HOH . L 3 HOH D 46 617 195 HOH HOH . L 3 HOH D 47 618 197 HOH HOH . L 3 HOH D 48 619 207 HOH HOH . L 3 HOH D 49 620 212 HOH HOH . L 3 HOH D 50 621 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . H 2 -14.587 24.443 31.805 1 63.56 ? N GLU 1 D 1 HETATM 2 C CA GLU . . . H 2 -14.823 23.109 32.343 1 52.35 ? CA GLU 1 D 1 HETATM 3 C C GLU . . . H 2 -13.58 22.569 33.04 1 49.69 ? C GLU 1 D 1 HETATM 4 O O GLU . . . H 2 -13.675 21.87 34.05 1 52.98 ? O GLU 1 D 1 HETATM 5 C CB GLU . . . H 2 -15.252 22.152 31.23 1 48.35 ? CB GLU 1 D 1 HETATM 6 C CG GLU . . . H 2 -15.397 20.71 31.682 1 57.63 ? CG GLU 1 D 1 HETATM 7 C CD GLU . . . H 2 -15.628 19.755 30.527 1 53.71 ? CD GLU 1 D 1 HETATM 8 O OE1 GLU . . . H 2 -15.96 20.225 29.417 1 46.54 ? OE1 GLU 1 D 1 HETATM 9 O OE2 GLU . . . H 2 -15.467 18.533 30.731 1 55.61 ? OE2 GLU 1 D 1 HETATM 10 O OXT GLU . . . H 2 -12.454 22.818 32.609 1 42.6 ? OXT GLU 1 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #