data_3SS8 # _model_server_result.job_id mKkIQr2s3Z80-IAASvg11Q _model_server_result.datetime_utc '2024-12-04 17:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ss8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 3SS8 # _exptl.entry_id 3SS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SS8 _cell.length_a 48.346 _cell.length_b 75.401 _cell.length_c 156.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 13 A ASN 11 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc2 A OG1 THR 17 A THR 15 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc3 A O GLY 31 A GLY 29 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc4 A O TRP 33 A TRP 31 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A OG1 THR 37 A THR 35 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 K O HOH . A HOH 271 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc7 K O HOH . A HOH 272 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc8 C O2B GDP . A GDP 300 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc9 C O2A GDP . A GDP 300 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc10 C O3A GDP . A GDP 300 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.435 ? metalc ? metalc11 C O3B GDP . A GDP 300 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc12 B OD1 ASN 13 B ASN 11 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc13 B OG1 THR 17 B THR 15 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 B O GLY 31 B GLY 29 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc15 B O TRP 33 B TRP 31 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc16 B OG1 THR 37 B THR 35 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc17 L O HOH . B HOH 271 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc18 L O HOH . B HOH 272 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc19 G O2B GDP . B GDP 300 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc20 G O2A GDP . B GDP 300 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc21 G O3A GDP . B GDP 300 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.444 ? metalc ? metalc22 G O3B GDP . B GDP 300 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SS8 _atom_sites.fract_transf_matrix[1][1] 0.020684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 300 300 GDP GDP . D 3 K A 1 301 301 K K . E 4 MG A 1 302 302 MG MG . F 5 ALF A 1 303 303 ALF ALF . G 2 GDP B 1 300 300 GDP GDP . H 3 K B 1 301 301 K K . I 4 MG B 1 302 302 MG MG . J 5 ALF B 1 303 303 ALF ALF . K 6 HOH A 1 271 1 HOH HOH . K 6 HOH A 2 272 2 HOH HOH . K 6 HOH A 3 273 5 HOH HOH . K 6 HOH A 4 274 12 HOH HOH . K 6 HOH A 5 275 13 HOH HOH . K 6 HOH A 6 276 14 HOH HOH . K 6 HOH A 7 277 15 HOH HOH . K 6 HOH A 8 278 23 HOH HOH . K 6 HOH A 9 279 24 HOH HOH . K 6 HOH A 10 280 25 HOH HOH . K 6 HOH A 11 281 28 HOH HOH . K 6 HOH A 12 282 29 HOH HOH . K 6 HOH A 13 283 30 HOH HOH . K 6 HOH A 14 284 32 HOH HOH . K 6 HOH A 15 285 34 HOH HOH . K 6 HOH A 16 286 36 HOH HOH . K 6 HOH A 17 287 38 HOH HOH . K 6 HOH A 18 288 39 HOH HOH . K 6 HOH A 19 289 40 HOH HOH . K 6 HOH A 20 290 41 HOH HOH . K 6 HOH A 21 291 42 HOH HOH . K 6 HOH A 22 292 43 HOH HOH . K 6 HOH A 23 293 45 HOH HOH . K 6 HOH A 24 294 46 HOH HOH . K 6 HOH A 25 295 48 HOH HOH . K 6 HOH A 26 296 50 HOH HOH . K 6 HOH A 27 297 51 HOH HOH . K 6 HOH A 28 298 52 HOH HOH . K 6 HOH A 29 299 53 HOH HOH . K 6 HOH A 30 304 54 HOH HOH . K 6 HOH A 31 305 55 HOH HOH . K 6 HOH A 32 306 56 HOH HOH . K 6 HOH A 33 307 60 HOH HOH . K 6 HOH A 34 308 61 HOH HOH . K 6 HOH A 35 309 62 HOH HOH . K 6 HOH A 36 310 63 HOH HOH . K 6 HOH A 37 311 64 HOH HOH . K 6 HOH A 38 312 65 HOH HOH . K 6 HOH A 39 313 66 HOH HOH . K 6 HOH A 40 314 67 HOH HOH . K 6 HOH A 41 315 68 HOH HOH . L 6 HOH B 1 271 3 HOH HOH . L 6 HOH B 2 272 4 HOH HOH . L 6 HOH B 3 273 6 HOH HOH . L 6 HOH B 4 274 7 HOH HOH . L 6 HOH B 5 275 8 HOH HOH . L 6 HOH B 6 276 9 HOH HOH . L 6 HOH B 7 277 10 HOH HOH . L 6 HOH B 8 278 11 HOH HOH . L 6 HOH B 9 279 16 HOH HOH . L 6 HOH B 10 280 17 HOH HOH . L 6 HOH B 11 281 18 HOH HOH . L 6 HOH B 12 282 19 HOH HOH . L 6 HOH B 13 283 20 HOH HOH . L 6 HOH B 14 284 21 HOH HOH . L 6 HOH B 15 285 22 HOH HOH . L 6 HOH B 16 286 26 HOH HOH . L 6 HOH B 17 287 27 HOH HOH . L 6 HOH B 18 288 31 HOH HOH . L 6 HOH B 19 289 33 HOH HOH . L 6 HOH B 20 290 35 HOH HOH . L 6 HOH B 21 291 37 HOH HOH . L 6 HOH B 22 292 44 HOH HOH . L 6 HOH B 23 293 47 HOH HOH . L 6 HOH B 24 294 49 HOH HOH . L 6 HOH B 25 295 57 HOH HOH . L 6 HOH B 26 296 58 HOH HOH . L 6 HOH B 27 297 59 HOH HOH . L 6 HOH B 28 298 69 HOH HOH . L 6 HOH B 29 299 70 HOH HOH . L 6 HOH B 30 304 71 HOH HOH . L 6 HOH B 31 305 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -31.827 _atom_site.Cartn_y 14.201 _atom_site.Cartn_z -46.071 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #