data_3SSJ # _model_server_result.job_id B0_lk4SeqZkATCHMNrHqKA _model_server_result.datetime_utc '2024-10-19 11:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ssj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":248}' # _entry.id 3SSJ # _exptl.entry_id 3SSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.186 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-amino-5-fluorouridine 5'-(dihydrogen phosphate)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SSJ _cell.length_a 58.416 _cell.length_b 103.592 _cell.length_c 73.673 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 F N3 O9 P' _chem_comp.formula_weight 357.186 _chem_comp.id FNU _chem_comp.mon_nstd_flag n _chem_comp.name "6-amino-5-fluorouridine 5'-(dihydrogen phosphate)" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O2P FNU sing 83 n n N1 C6 FNU sing 84 n n N1 C2 FNU sing 85 n n C2 N2 FNU sing 86 n n N2 C4 FNU sing 87 n n N2 HN2 FNU sing 88 n n O2 C2 FNU doub 89 n n N3 C6 FNU sing 90 n n N3 HN3 FNU sing 91 n n N3 H14 FNU sing 92 n n C4 O4 FNU doub 93 n n C5 C4 FNU sing 94 n n C5 F24 FNU sing 95 n n C6 C5 FNU doub 96 n n C1' N1 FNU sing 97 n n C1' C2' FNU sing 98 n n C1' H1' FNU sing 99 n n O1P P FNU doub 100 n n C2' O2' FNU sing 101 n n C2' H2' FNU sing 102 n n O2' HO2' FNU sing 103 n n O2P HO2P FNU sing 104 n n C3' C2' FNU sing 105 n n C3' H3' FNU sing 106 n n O3' C3' FNU sing 107 n n O3' HO3' FNU sing 108 n n O3P P FNU sing 109 n n O3P HO3P FNU sing 110 n n C4' C3' FNU sing 111 n n C4' O4' FNU sing 112 n n C4' C5' FNU sing 113 n n C4' H4' FNU sing 114 n n O4' C1' FNU sing 115 n n C5' H5' FNU sing 116 n n C5' "H5'A" FNU sing 117 n n O5' P FNU sing 118 n n O5' C5' FNU sing 119 n n # _atom_sites.entry_id 3SSJ _atom_sites.fract_transf_matrix[1][1] 0.017119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FNU A 1 248 1 FNU FNU . C 3 GOL A 1 1614 1614 GOL GOL . D 4 HOH A 1 249 1 HOH HOH . D 4 HOH A 2 250 2 HOH HOH . D 4 HOH A 3 251 3 HOH HOH . D 4 HOH A 4 252 4 HOH HOH . D 4 HOH A 5 253 5 HOH HOH . D 4 HOH A 6 254 6 HOH HOH . D 4 HOH A 7 255 7 HOH HOH . D 4 HOH A 8 256 8 HOH HOH . D 4 HOH A 9 257 9 HOH HOH . D 4 HOH A 10 258 10 HOH HOH . D 4 HOH A 11 259 11 HOH HOH . D 4 HOH A 12 260 12 HOH HOH . D 4 HOH A 13 261 13 HOH HOH . D 4 HOH A 14 262 14 HOH HOH . D 4 HOH A 15 263 15 HOH HOH . D 4 HOH A 16 264 16 HOH HOH . D 4 HOH A 17 265 17 HOH HOH . D 4 HOH A 18 266 18 HOH HOH . D 4 HOH A 19 267 19 HOH HOH . D 4 HOH A 20 268 20 HOH HOH . D 4 HOH A 21 269 21 HOH HOH . D 4 HOH A 22 270 22 HOH HOH . D 4 HOH A 23 271 23 HOH HOH . D 4 HOH A 24 272 24 HOH HOH . D 4 HOH A 25 273 25 HOH HOH . D 4 HOH A 26 274 26 HOH HOH . D 4 HOH A 27 275 27 HOH HOH . D 4 HOH A 28 276 28 HOH HOH . D 4 HOH A 29 277 29 HOH HOH . D 4 HOH A 30 278 30 HOH HOH . D 4 HOH A 31 279 31 HOH HOH . D 4 HOH A 32 280 32 HOH HOH . D 4 HOH A 33 281 33 HOH HOH . D 4 HOH A 34 282 34 HOH HOH . D 4 HOH A 35 283 35 HOH HOH . D 4 HOH A 36 284 36 HOH HOH . D 4 HOH A 37 285 37 HOH HOH . D 4 HOH A 38 286 38 HOH HOH . D 4 HOH A 39 287 39 HOH HOH . D 4 HOH A 40 288 40 HOH HOH . D 4 HOH A 41 289 41 HOH HOH . D 4 HOH A 42 290 42 HOH HOH . D 4 HOH A 43 291 43 HOH HOH . D 4 HOH A 44 292 44 HOH HOH . D 4 HOH A 45 293 45 HOH HOH . D 4 HOH A 46 294 46 HOH HOH . D 4 HOH A 47 295 47 HOH HOH . D 4 HOH A 48 296 48 HOH HOH . D 4 HOH A 49 297 49 HOH HOH . D 4 HOH A 50 298 50 HOH HOH . D 4 HOH A 51 299 51 HOH HOH . D 4 HOH A 52 300 52 HOH HOH . D 4 HOH A 53 301 53 HOH HOH . D 4 HOH A 54 302 54 HOH HOH . D 4 HOH A 55 303 55 HOH HOH . D 4 HOH A 56 304 56 HOH HOH . D 4 HOH A 57 305 57 HOH HOH . D 4 HOH A 58 306 58 HOH HOH . D 4 HOH A 59 307 59 HOH HOH . D 4 HOH A 60 308 60 HOH HOH . D 4 HOH A 61 309 61 HOH HOH . D 4 HOH A 62 310 62 HOH HOH . D 4 HOH A 63 311 63 HOH HOH . D 4 HOH A 64 312 64 HOH HOH . D 4 HOH A 65 313 65 HOH HOH . D 4 HOH A 66 314 66 HOH HOH . D 4 HOH A 67 315 67 HOH HOH . D 4 HOH A 68 316 68 HOH HOH . D 4 HOH A 69 317 69 HOH HOH . D 4 HOH A 70 318 70 HOH HOH . D 4 HOH A 71 319 71 HOH HOH . D 4 HOH A 72 320 72 HOH HOH . D 4 HOH A 73 321 73 HOH HOH . D 4 HOH A 74 322 74 HOH HOH . D 4 HOH A 75 323 75 HOH HOH . D 4 HOH A 76 324 76 HOH HOH . D 4 HOH A 77 325 78 HOH HOH . D 4 HOH A 78 326 79 HOH HOH . D 4 HOH A 79 327 80 HOH HOH . D 4 HOH A 80 328 81 HOH HOH . D 4 HOH A 81 329 82 HOH HOH . D 4 HOH A 82 330 83 HOH HOH . D 4 HOH A 83 331 84 HOH HOH . D 4 HOH A 84 332 85 HOH HOH . D 4 HOH A 85 333 86 HOH HOH . D 4 HOH A 86 334 87 HOH HOH . D 4 HOH A 87 335 88 HOH HOH . D 4 HOH A 88 336 89 HOH HOH . D 4 HOH A 89 337 90 HOH HOH . D 4 HOH A 90 338 91 HOH HOH . D 4 HOH A 91 339 92 HOH HOH . D 4 HOH A 92 340 93 HOH HOH . D 4 HOH A 93 341 94 HOH HOH . D 4 HOH A 94 342 95 HOH HOH . D 4 HOH A 95 343 96 HOH HOH . D 4 HOH A 96 344 97 HOH HOH . D 4 HOH A 97 345 98 HOH HOH . D 4 HOH A 98 346 99 HOH HOH . D 4 HOH A 99 347 100 HOH HOH . D 4 HOH A 100 348 101 HOH HOH . D 4 HOH A 101 349 102 HOH HOH . D 4 HOH A 102 350 103 HOH HOH . D 4 HOH A 103 351 104 HOH HOH . D 4 HOH A 104 352 105 HOH HOH . D 4 HOH A 105 353 106 HOH HOH . D 4 HOH A 106 354 107 HOH HOH . D 4 HOH A 107 355 108 HOH HOH . D 4 HOH A 108 356 109 HOH HOH . D 4 HOH A 109 357 110 HOH HOH . D 4 HOH A 110 358 111 HOH HOH . D 4 HOH A 111 359 112 HOH HOH . D 4 HOH A 112 360 113 HOH HOH . D 4 HOH A 113 361 114 HOH HOH . D 4 HOH A 114 362 115 HOH HOH . D 4 HOH A 115 363 116 HOH HOH . D 4 HOH A 116 364 117 HOH HOH . D 4 HOH A 117 365 118 HOH HOH . D 4 HOH A 118 366 119 HOH HOH . D 4 HOH A 119 367 120 HOH HOH . D 4 HOH A 120 368 121 HOH HOH . D 4 HOH A 121 369 122 HOH HOH . D 4 HOH A 122 370 123 HOH HOH . D 4 HOH A 123 371 124 HOH HOH . D 4 HOH A 124 372 125 HOH HOH . D 4 HOH A 125 373 126 HOH HOH . D 4 HOH A 126 374 127 HOH HOH . D 4 HOH A 127 375 128 HOH HOH . D 4 HOH A 128 376 129 HOH HOH . D 4 HOH A 129 377 130 HOH HOH . D 4 HOH A 130 378 131 HOH HOH . D 4 HOH A 131 379 132 HOH HOH . D 4 HOH A 132 380 133 HOH HOH . D 4 HOH A 133 381 134 HOH HOH . D 4 HOH A 134 382 135 HOH HOH . D 4 HOH A 135 383 136 HOH HOH . D 4 HOH A 136 384 137 HOH HOH . D 4 HOH A 137 385 138 HOH HOH . D 4 HOH A 138 386 139 HOH HOH . D 4 HOH A 139 387 140 HOH HOH . D 4 HOH A 140 388 141 HOH HOH . D 4 HOH A 141 389 142 HOH HOH . D 4 HOH A 142 390 143 HOH HOH . D 4 HOH A 143 391 144 HOH HOH . D 4 HOH A 144 392 145 HOH HOH . D 4 HOH A 145 393 146 HOH HOH . D 4 HOH A 146 394 147 HOH HOH . D 4 HOH A 147 395 148 HOH HOH . D 4 HOH A 148 396 149 HOH HOH . D 4 HOH A 149 397 150 HOH HOH . D 4 HOH A 150 398 151 HOH HOH . D 4 HOH A 151 399 152 HOH HOH . D 4 HOH A 152 400 153 HOH HOH . D 4 HOH A 153 401 154 HOH HOH . D 4 HOH A 154 402 155 HOH HOH . D 4 HOH A 155 403 156 HOH HOH . D 4 HOH A 156 404 157 HOH HOH . D 4 HOH A 157 405 158 HOH HOH . D 4 HOH A 158 406 159 HOH HOH . D 4 HOH A 159 407 160 HOH HOH . D 4 HOH A 160 408 161 HOH HOH . D 4 HOH A 161 409 162 HOH HOH . D 4 HOH A 162 410 163 HOH HOH . D 4 HOH A 163 411 164 HOH HOH . D 4 HOH A 164 412 165 HOH HOH . D 4 HOH A 165 413 166 HOH HOH . D 4 HOH A 166 414 167 HOH HOH . D 4 HOH A 167 415 168 HOH HOH . D 4 HOH A 168 416 169 HOH HOH . D 4 HOH A 169 417 170 HOH HOH . D 4 HOH A 170 418 171 HOH HOH . D 4 HOH A 171 419 172 HOH HOH . D 4 HOH A 172 420 173 HOH HOH . D 4 HOH A 173 421 174 HOH HOH . D 4 HOH A 174 422 175 HOH HOH . D 4 HOH A 175 423 176 HOH HOH . D 4 HOH A 176 424 177 HOH HOH . D 4 HOH A 177 425 178 HOH HOH . D 4 HOH A 178 426 179 HOH HOH . D 4 HOH A 179 427 180 HOH HOH . D 4 HOH A 180 428 181 HOH HOH . D 4 HOH A 181 429 182 HOH HOH . D 4 HOH A 182 430 183 HOH HOH . D 4 HOH A 183 431 184 HOH HOH . D 4 HOH A 184 432 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P FNU . . . B 2 19.147 17.158 -1.759 1 7.19 ? P FNU 248 A 1 HETATM 2 N N1 FNU . . . B 2 16.641 11.642 0.941 1 5.35 ? N1 FNU 248 A 1 HETATM 3 C C2 FNU . . . B 2 15.736 12.276 0.186 1 6.79 ? C2 FNU 248 A 1 HETATM 4 N N2 FNU . . . B 2 14.433 11.978 0.318 1 5.89 ? N2 FNU 248 A 1 HETATM 5 O O2 FNU . . . B 2 16.068 13.137 -0.663 1 6.6 ? O2 FNU 248 A 1 HETATM 6 N N3 FNU . . . B 2 17.155 10.337 2.831 1 8.65 ? N3 FNU 248 A 1 HETATM 7 C C4 FNU . . . B 2 13.97 11.085 1.228 1 6.91 ? C4 FNU 248 A 1 HETATM 8 O O4 FNU . . . B 2 12.719 10.893 1.301 1 7.44 ? O4 FNU 248 A 1 HETATM 9 C C5 FNU . . . B 2 14.903 10.481 2.063 1 7.33 ? C5 FNU 248 A 1 HETATM 10 C C6 FNU . . . B 2 16.241 10.819 1.959 1 6.95 ? C6 FNU 248 A 1 HETATM 11 C C1' FNU . . . B 2 18.084 11.927 0.803 1 6.16 ? C1' FNU 248 A 1 HETATM 12 O O1P FNU . . . B 2 19.051 18.264 -0.734 1 7.07 ? O1P FNU 248 A 1 HETATM 13 C C2' FNU . . . B 2 18.656 11.823 -0.623 1 6.39 ? C2' FNU 248 A 1 HETATM 14 O O2' FNU . . . B 2 19.143 10.525 -0.956 1 6.89 ? O2' FNU 248 A 1 HETATM 15 F F24 FNU . . . B 2 14.504 9.619 3.056 1 8.49 ? F24 FNU 248 A 1 HETATM 16 O O2P FNU . . . B 2 17.848 16.938 -2.484 1 7.34 ? O2P FNU 248 A 1 HETATM 17 C C3' FNU . . . B 2 19.778 12.843 -0.575 1 7.14 ? C3' FNU 248 A 1 HETATM 18 O O3' FNU . . . B 2 20.949 12.229 0.028 1 7.6 ? O3' FNU 248 A 1 HETATM 19 O O3P FNU . . . B 2 20.338 17.299 -2.687 1 6.72 ? O3P FNU 248 A 1 HETATM 20 C C4' FNU . . . B 2 19.261 13.914 0.353 1 7.03 ? C4' FNU 248 A 1 HETATM 21 O O4' FNU . . . B 2 18.368 13.238 1.249 1 6.02 ? O4' FNU 248 A 1 HETATM 22 C C5' FNU . . . B 2 18.501 15.025 -0.349 1 8.64 ? C5' FNU 248 A 1 HETATM 23 O O5' FNU . . . B 2 19.531 15.793 -0.971 1 7.33 ? O5' FNU 248 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #