data_3STR # _model_server_result.job_id adhd6xeuBLpgaXVZY74EkA _model_server_result.datetime_utc '2024-12-31 04:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3str # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":209}' # _entry.id 3STR # _exptl.entry_id 3STR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 641.144 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-[2-(hydroxyamino)-2-oxoethyl]-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3STR _cell.length_a 50.274 _cell.length_b 50.274 _cell.length_c 91.486 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3STR _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 P CYS 130 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc2 A NE2 HIS 173 P HIS 173 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A NE2 HIS 177 P HIS 177 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 B NI NI . P NI 204 1_555 G O44 3LI . P 3LI 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 B NI NI . P NI 204 1_555 G O42 3LI . P 3LI 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C28 H33 Cl N10 O4 S' _chem_comp.formula_weight 641.144 _chem_comp.id 3LI _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-[2-(hydroxyamino)-2-oxoethyl]-1,3-thiazolidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 3LI sing 1 n n N02 C03 3LI sing 2 n n C03 O04 3LI doub 3 n n C03 C05 3LI sing 4 n n C05 C06 3LI doub 5 n y C05 C11 3LI sing 6 n y C06 C07 3LI sing 7 n y C07 C08 3LI doub 8 n y C08 C09 3LI sing 9 n y C09 C10 3LI sing 10 n n C09 C11 3LI doub 11 n y C11 N12 3LI sing 12 n n N12 C13 3LI sing 13 n n C13 N14 3LI doub 14 n y C13 N18 3LI sing 15 n y N14 C15 3LI sing 16 n y C15 N16 3LI doub 17 n y C15 N32 3LI sing 18 n n N16 C17 3LI sing 19 n y C17 N18 3LI doub 20 n y C17 N19 3LI sing 21 n n N19 C20 3LI sing 22 n n N19 C24 3LI sing 23 n n C20 C21 3LI sing 24 n n C21 N22 3LI sing 25 n n N22 C23 3LI sing 26 n n N22 C25 3LI sing 27 n n C23 C24 3LI sing 28 n n C25 C26 3LI doub 29 n y C25 C30 3LI sing 30 n y C26 C27 3LI sing 31 n y C27 C28 3LI doub 32 n y C28 C29 3LI sing 33 n y C29 C30 3LI doub 34 n y C30 CL31 3LI sing 35 n n N32 C33 3LI sing 36 n n N32 C36 3LI sing 37 n n C33 S34 3LI sing 38 n n S34 C35 3LI sing 39 n n C35 C36 3LI sing 40 n n C36 C37 3LI sing 41 n n C37 O38 3LI doub 42 n n C37 N39 3LI sing 43 n n N39 C40 3LI sing 44 n n C40 C41 3LI sing 45 n n C41 O42 3LI doub 46 n n C41 N43 3LI sing 47 n n N43 O44 3LI sing 48 n n C01 H01 3LI sing 49 n n C01 H01A 3LI sing 50 n n C01 H01B 3LI sing 51 n n N02 HN02 3LI sing 52 n n C06 H06 3LI sing 53 n n C07 H07 3LI sing 54 n n C08 H08 3LI sing 55 n n C10 H10 3LI sing 56 n n C10 H10A 3LI sing 57 n n C10 H10B 3LI sing 58 n n N12 HN12 3LI sing 59 n n C20 H20 3LI sing 60 n n C20 H20A 3LI sing 61 n n C21 H21 3LI sing 62 n n C21 H21A 3LI sing 63 n n C23 H23 3LI sing 64 n n C23 H23A 3LI sing 65 n n C24 H24 3LI sing 66 n n C24 H24A 3LI sing 67 n n C26 H26 3LI sing 68 n n C27 H27 3LI sing 69 n n C28 H28 3LI sing 70 n n C29 H29 3LI sing 71 n n C33 H33 3LI sing 72 n n C33 H33A 3LI sing 73 n n C35 H35 3LI sing 74 n n C35 H35A 3LI sing 75 n n C36 H36 3LI sing 76 n n N39 HN39 3LI sing 77 n n C40 H40 3LI sing 78 n n C40 H40A 3LI sing 79 n n N43 HN43 3LI sing 80 n n O44 HO44 3LI sing 81 n n # _atom_sites.entry_id 3STR _atom_sites.fract_transf_matrix[1][1] 0.019891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI P 1 204 1 NI NI2 . C 3 SO4 P 1 205 1 SO4 SO4 . D 3 SO4 P 1 206 2 SO4 SO4 . E 3 SO4 P 1 207 3 SO4 SO4 . F 3 SO4 P 1 208 4 SO4 SO4 . G 4 3LI P 1 209 205 3LI 3LI . H 5 GOL P 1 210 1 GOL GOL . I 6 HOH P 1 211 3 HOH HOH . I 6 HOH P 2 212 5 HOH HOH . I 6 HOH P 3 213 6 HOH HOH . I 6 HOH P 4 214 7 HOH HOH . I 6 HOH P 5 215 8 HOH HOH . I 6 HOH P 6 216 9 HOH HOH . I 6 HOH P 7 217 10 HOH HOH . I 6 HOH P 8 218 11 HOH HOH . I 6 HOH P 9 219 13 HOH HOH . I 6 HOH P 10 220 14 HOH HOH . I 6 HOH P 11 221 15 HOH HOH . I 6 HOH P 12 222 16 HOH HOH . I 6 HOH P 13 223 17 HOH HOH . I 6 HOH P 14 224 18 HOH HOH . I 6 HOH P 15 225 19 HOH HOH . I 6 HOH P 16 226 20 HOH HOH . I 6 HOH P 17 227 21 HOH HOH . I 6 HOH P 18 228 22 HOH HOH . I 6 HOH P 19 229 23 HOH HOH . I 6 HOH P 20 230 24 HOH HOH . I 6 HOH P 21 231 25 HOH HOH . I 6 HOH P 22 232 26 HOH HOH . I 6 HOH P 23 233 27 HOH HOH . I 6 HOH P 24 234 28 HOH HOH . I 6 HOH P 25 235 31 HOH HOH . I 6 HOH P 26 236 32 HOH HOH . I 6 HOH P 27 237 33 HOH HOH . I 6 HOH P 28 238 35 HOH HOH . I 6 HOH P 29 239 36 HOH HOH . I 6 HOH P 30 240 38 HOH HOH . I 6 HOH P 31 241 39 HOH HOH . I 6 HOH P 32 242 40 HOH HOH . I 6 HOH P 33 243 41 HOH HOH . I 6 HOH P 34 244 42 HOH HOH . I 6 HOH P 35 245 43 HOH HOH . I 6 HOH P 36 246 44 HOH HOH . I 6 HOH P 37 247 45 HOH HOH . I 6 HOH P 38 248 46 HOH HOH . I 6 HOH P 39 249 48 HOH HOH . I 6 HOH P 40 250 49 HOH HOH . I 6 HOH P 41 251 51 HOH HOH . I 6 HOH P 42 252 53 HOH HOH . I 6 HOH P 43 253 54 HOH HOH . I 6 HOH P 44 254 55 HOH HOH . I 6 HOH P 45 255 56 HOH HOH . I 6 HOH P 46 256 57 HOH HOH . I 6 HOH P 47 257 58 HOH HOH . I 6 HOH P 48 258 59 HOH HOH . I 6 HOH P 49 259 60 HOH HOH . I 6 HOH P 50 260 61 HOH HOH . I 6 HOH P 51 261 62 HOH HOH . I 6 HOH P 52 262 63 HOH HOH . I 6 HOH P 53 263 67 HOH HOH . I 6 HOH P 54 264 69 HOH HOH . I 6 HOH P 55 265 70 HOH HOH . I 6 HOH P 56 266 71 HOH HOH . I 6 HOH P 57 267 72 HOH HOH . I 6 HOH P 58 268 73 HOH HOH . I 6 HOH P 59 269 74 HOH HOH . I 6 HOH P 60 270 75 HOH HOH . I 6 HOH P 61 271 77 HOH HOH . I 6 HOH P 62 272 78 HOH HOH . I 6 HOH P 63 273 79 HOH HOH . I 6 HOH P 64 274 80 HOH HOH . I 6 HOH P 65 275 82 HOH HOH . I 6 HOH P 66 276 83 HOH HOH . I 6 HOH P 67 277 84 HOH HOH . I 6 HOH P 68 278 85 HOH HOH . I 6 HOH P 69 279 86 HOH HOH . I 6 HOH P 70 280 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3LI . . . G 4 27.236 -12.808 9.535 1 32.27 ? C01 3LI 209 P 1 HETATM 2 N N02 3LI . . . G 4 25.826 -12.532 9.598 1 32.88 ? N02 3LI 209 P 1 HETATM 3 C C03 3LI . . . G 4 25.171 -12.104 8.48 1 32.9 ? C03 3LI 209 P 1 HETATM 4 O O04 3LI . . . G 4 25.658 -11.933 7.372 1 38.13 ? O04 3LI 209 P 1 HETATM 5 C C05 3LI . . . G 4 23.75 -11.863 8.693 1 31.14 ? C05 3LI 209 P 1 HETATM 6 C C06 3LI . . . G 4 22.88 -12.913 8.525 1 34.24 ? C06 3LI 209 P 1 HETATM 7 C C07 3LI . . . G 4 21.541 -12.689 8.722 1 33.44 ? C07 3LI 209 P 1 HETATM 8 C C08 3LI . . . G 4 21.1 -11.438 9.082 1 34.02 ? C08 3LI 209 P 1 HETATM 9 C C09 3LI . . . G 4 21.987 -10.398 9.242 1 29.29 ? C09 3LI 209 P 1 HETATM 10 C C10 3LI . . . G 4 21.481 -9.055 9.633 1 31.64 ? C10 3LI 209 P 1 HETATM 11 C C11 3LI . . . G 4 23.33 -10.604 9.044 1 26.66 ? C11 3LI 209 P 1 HETATM 12 N N12 3LI . . . G 4 24.25 -9.565 9.213 1 27.99 ? N12 3LI 209 P 1 HETATM 13 C C13 3LI . . . G 4 24.335 -8.493 8.322 1 25.31 ? C13 3LI 209 P 1 HETATM 14 N N14 3LI . . . G 4 25.244 -7.548 8.58 1 24.84 ? N14 3LI 209 P 1 HETATM 15 C C15 3LI . . . G 4 25.303 -6.533 7.712 1 23.34 ? C15 3LI 209 P 1 HETATM 16 N N16 3LI . . . G 4 24.51 -6.459 6.646 1 23.98 ? N16 3LI 209 P 1 HETATM 17 C C17 3LI . . . G 4 23.625 -7.444 6.462 1 26.32 ? C17 3LI 209 P 1 HETATM 18 N N18 3LI . . . G 4 23.508 -8.487 7.281 1 24.75 ? N18 3LI 209 P 1 HETATM 19 N N19 3LI . . . G 4 22.787 -7.403 5.338 1 26.22 ? N19 3LI 209 P 1 HETATM 20 C C20 3LI . . . G 4 21.605 -8.224 5.443 1 27.96 ? C20 3LI 209 P 1 HETATM 21 C C21 3LI . . . G 4 21.069 -8.4 4.039 1 30.26 ? C21 3LI 209 P 1 HETATM 22 N N22 3LI . . . G 4 20.871 -7.092 3.439 1 28.62 ? N22 3LI 209 P 1 HETATM 23 C C23 3LI . . . G 4 22.069 -6.281 3.366 1 26.09 ? C23 3LI 209 P 1 HETATM 24 C C24 3LI . . . G 4 22.597 -6.084 4.774 1 27.89 ? C24 3LI 209 P 1 HETATM 25 C C25 3LI . . . G 4 20.302 -7.259 2.166 1 34.85 ? C25 3LI 209 P 1 HETATM 26 C C26 3LI . . . G 4 20.604 -8.361 1.401 1 31.99 ? C26 3LI 209 P 1 HETATM 27 C C27 3LI . . . G 4 20.041 -8.524 0.157 1 38.7 ? C27 3LI 209 P 1 HETATM 28 C C28 3LI . . . G 4 19.162 -7.589 -0.334 1 35.97 ? C28 3LI 209 P 1 HETATM 29 C C29 3LI . . . G 4 18.849 -6.488 0.423 1 37.36 ? C29 3LI 209 P 1 HETATM 30 C C30 3LI . . . G 4 19.422 -6.333 1.662 1 32.99 ? C30 3LI 209 P 1 HETATM 31 CL CL31 3LI . . . G 4 19.016 -4.949 2.594 1 40.1 ? CL31 3LI 209 P 1 HETATM 32 N N32 3LI . . . G 4 26.25 -5.51 7.923 1 20.94 ? N32 3LI 209 P 1 HETATM 33 C C33 3LI . . . G 4 26.612 -5.441 9.324 1 22.48 ? C33 3LI 209 P 1 HETATM 34 S S34 3LI . . . G 4 26.39 -3.744 9.906 1 21.43 ? S34 3LI 209 P 1 HETATM 35 C C35 3LI . . . G 4 26.325 -3.105 8.214 1 19.65 ? C35 3LI 209 P 1 HETATM 36 C C36 3LI . . . G 4 25.764 -4.244 7.379 1 20.57 ? C36 3LI 209 P 1 HETATM 37 C C37 3LI . . . G 4 26.276 -4.057 5.983 1 24 ? C37 3LI 209 P 1 HETATM 38 O O38 3LI . . . G 4 25.657 -3.403 5.159 1 23.63 ? O38 3LI 209 P 1 HETATM 39 N N39 3LI . . . G 4 27.48 -4.664 5.728 1 23.13 ? N39 3LI 209 P 1 HETATM 40 C C40 3LI . . . G 4 28.063 -4.431 4.428 1 25.85 ? C40 3LI 209 P 1 HETATM 41 C C41 3LI . . . G 4 29.364 -3.729 4.652 1 25.33 ? C41 3LI 209 P 1 HETATM 42 O O42 3LI . . . G 4 30.43 -4.32 4.712 1 32.38 ? O42 3LI 209 P 1 HETATM 43 N N43 3LI . . . G 4 29.243 -2.372 4.788 1 24.57 ? N43 3LI 209 P 1 HETATM 44 O O44 3LI . . . G 4 30.501 -1.828 5.147 1 21.59 ? O44 3LI 209 P 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #