data_3STR # _model_server_result.job_id S20PCXUB14pg1E63t0pzZQ _model_server_result.datetime_utc '2024-11-09 02:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3str # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":210}' # _entry.id 3STR # _exptl.entry_id 3STR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3STR _cell.length_a 50.274 _cell.length_b 50.274 _cell.length_c 91.486 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3STR _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 P CYS 130 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc2 A NE2 HIS 173 P HIS 173 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A NE2 HIS 177 P HIS 177 1_555 B NI NI . P NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 B NI NI . P NI 204 1_555 G O44 3LI . P 3LI 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 B NI NI . P NI 204 1_555 G O42 3LI . P 3LI 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 3STR _atom_sites.fract_transf_matrix[1][1] 0.019891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI P 1 204 1 NI NI2 . C 3 SO4 P 1 205 1 SO4 SO4 . D 3 SO4 P 1 206 2 SO4 SO4 . E 3 SO4 P 1 207 3 SO4 SO4 . F 3 SO4 P 1 208 4 SO4 SO4 . G 4 3LI P 1 209 205 3LI 3LI . H 5 GOL P 1 210 1 GOL GOL . I 6 HOH P 1 211 3 HOH HOH . I 6 HOH P 2 212 5 HOH HOH . I 6 HOH P 3 213 6 HOH HOH . I 6 HOH P 4 214 7 HOH HOH . I 6 HOH P 5 215 8 HOH HOH . I 6 HOH P 6 216 9 HOH HOH . I 6 HOH P 7 217 10 HOH HOH . I 6 HOH P 8 218 11 HOH HOH . I 6 HOH P 9 219 13 HOH HOH . I 6 HOH P 10 220 14 HOH HOH . I 6 HOH P 11 221 15 HOH HOH . I 6 HOH P 12 222 16 HOH HOH . I 6 HOH P 13 223 17 HOH HOH . I 6 HOH P 14 224 18 HOH HOH . I 6 HOH P 15 225 19 HOH HOH . I 6 HOH P 16 226 20 HOH HOH . I 6 HOH P 17 227 21 HOH HOH . I 6 HOH P 18 228 22 HOH HOH . I 6 HOH P 19 229 23 HOH HOH . I 6 HOH P 20 230 24 HOH HOH . I 6 HOH P 21 231 25 HOH HOH . I 6 HOH P 22 232 26 HOH HOH . I 6 HOH P 23 233 27 HOH HOH . I 6 HOH P 24 234 28 HOH HOH . I 6 HOH P 25 235 31 HOH HOH . I 6 HOH P 26 236 32 HOH HOH . I 6 HOH P 27 237 33 HOH HOH . I 6 HOH P 28 238 35 HOH HOH . I 6 HOH P 29 239 36 HOH HOH . I 6 HOH P 30 240 38 HOH HOH . I 6 HOH P 31 241 39 HOH HOH . I 6 HOH P 32 242 40 HOH HOH . I 6 HOH P 33 243 41 HOH HOH . I 6 HOH P 34 244 42 HOH HOH . I 6 HOH P 35 245 43 HOH HOH . I 6 HOH P 36 246 44 HOH HOH . I 6 HOH P 37 247 45 HOH HOH . I 6 HOH P 38 248 46 HOH HOH . I 6 HOH P 39 249 48 HOH HOH . I 6 HOH P 40 250 49 HOH HOH . I 6 HOH P 41 251 51 HOH HOH . I 6 HOH P 42 252 53 HOH HOH . I 6 HOH P 43 253 54 HOH HOH . I 6 HOH P 44 254 55 HOH HOH . I 6 HOH P 45 255 56 HOH HOH . I 6 HOH P 46 256 57 HOH HOH . I 6 HOH P 47 257 58 HOH HOH . I 6 HOH P 48 258 59 HOH HOH . I 6 HOH P 49 259 60 HOH HOH . I 6 HOH P 50 260 61 HOH HOH . I 6 HOH P 51 261 62 HOH HOH . I 6 HOH P 52 262 63 HOH HOH . I 6 HOH P 53 263 67 HOH HOH . I 6 HOH P 54 264 69 HOH HOH . I 6 HOH P 55 265 70 HOH HOH . I 6 HOH P 56 266 71 HOH HOH . I 6 HOH P 57 267 72 HOH HOH . I 6 HOH P 58 268 73 HOH HOH . I 6 HOH P 59 269 74 HOH HOH . I 6 HOH P 60 270 75 HOH HOH . I 6 HOH P 61 271 77 HOH HOH . I 6 HOH P 62 272 78 HOH HOH . I 6 HOH P 63 273 79 HOH HOH . I 6 HOH P 64 274 80 HOH HOH . I 6 HOH P 65 275 82 HOH HOH . I 6 HOH P 66 276 83 HOH HOH . I 6 HOH P 67 277 84 HOH HOH . I 6 HOH P 68 278 85 HOH HOH . I 6 HOH P 69 279 86 HOH HOH . I 6 HOH P 70 280 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 21.66 8.865 21.377 1 23.78 ? C1 GOL 210 P 1 HETATM 2 O O1 GOL . . . H 5 22.965 8.484 21.731 1 34.23 ? O1 GOL 210 P 1 HETATM 3 C C2 GOL . . . H 5 20.865 8.927 22.68 1 40.32 ? C2 GOL 210 P 1 HETATM 4 O O2 GOL . . . H 5 19.97 7.834 22.738 1 46.6 ? O2 GOL 210 P 1 HETATM 5 C C3 GOL . . . H 5 21.825 8.843 23.861 1 33.01 ? C3 GOL 210 P 1 HETATM 6 O O3 GOL . . . H 5 22.918 9.716 23.667 1 40.72 ? O3 GOL 210 P 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 99 _model_server_stats.create_model_time_ms 114 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #