data_3STV # _model_server_result.job_id k1aCs3rsiif2WT3XX2eXPA _model_server_result.datetime_utc '2024-11-04 22:54:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3stv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3STV # _exptl.entry_id 3STV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-3-hydroxyoctanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.56 _cell.angle_gamma 90 _cell.entry_id 3STV _cell.length_a 48.038 _cell.length_b 92.38 _cell.length_c 60.596 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3STV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H16 O3' _chem_comp.formula_weight 160.211 _chem_comp.id 3HO _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-3-hydroxyoctanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 3HO doub 1 n n C2 C1 3HO sing 2 n n C1 O2 3HO sing 3 n n O2 HO2 3HO sing 4 n n C2 C3 3HO sing 5 n n C2 H2 3HO sing 6 n n C2 H2A 3HO sing 7 n n O3 C3 3HO sing 8 n n C4 C3 3HO sing 9 n n C3 H3 3HO sing 10 n n O3 HO3 3HO sing 11 n n C4 C5 3HO sing 12 n n C4 H4 3HO sing 13 n n C4 H4A 3HO sing 14 n n C6 C5 3HO sing 15 n n C5 H5 3HO sing 16 n n C5 H5A 3HO sing 17 n n C6 C7 3HO sing 18 n n C6 H6 3HO sing 19 n n C6 H6A 3HO sing 20 n n C8 C7 3HO sing 21 n n C7 H7 3HO sing 22 n n C7 H7A 3HO sing 23 n n C8 H8 3HO sing 24 n n C8 H8A 3HO sing 25 n n C8 H8B 3HO sing 26 n n # _atom_sites.entry_id 3STV _atom_sites.fract_transf_matrix[1][1] 0.020817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002763 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3HO A 1 301 301 3HO 3HO . D 3 BR B 1 266 1 BR BR . E 4 HOH A 1 266 1 HOH TIP . E 4 HOH A 2 267 3 HOH TIP . E 4 HOH A 3 268 5 HOH TIP . E 4 HOH A 4 269 8 HOH TIP . E 4 HOH A 5 270 9 HOH TIP . E 4 HOH A 6 271 10 HOH TIP . E 4 HOH A 7 272 13 HOH TIP . E 4 HOH A 8 273 17 HOH TIP . E 4 HOH A 9 274 20 HOH TIP . E 4 HOH A 10 275 21 HOH TIP . E 4 HOH A 11 276 22 HOH TIP . E 4 HOH A 12 277 23 HOH TIP . E 4 HOH A 13 278 25 HOH TIP . E 4 HOH A 14 279 26 HOH TIP . E 4 HOH A 15 280 28 HOH TIP . E 4 HOH A 16 281 29 HOH TIP . E 4 HOH A 17 282 31 HOH TIP . E 4 HOH A 18 283 32 HOH TIP . E 4 HOH A 19 284 33 HOH TIP . E 4 HOH A 20 285 35 HOH TIP . E 4 HOH A 21 286 38 HOH TIP . E 4 HOH A 22 287 41 HOH TIP . E 4 HOH A 23 288 42 HOH TIP . E 4 HOH A 24 289 44 HOH TIP . E 4 HOH A 25 290 47 HOH TIP . E 4 HOH A 26 291 49 HOH TIP . E 4 HOH A 27 292 53 HOH TIP . E 4 HOH A 28 293 54 HOH TIP . E 4 HOH A 29 294 55 HOH TIP . E 4 HOH A 30 295 57 HOH TIP . E 4 HOH A 31 296 58 HOH TIP . E 4 HOH A 32 297 61 HOH TIP . E 4 HOH A 33 298 62 HOH TIP . E 4 HOH A 34 299 64 HOH TIP . E 4 HOH A 35 300 66 HOH TIP . E 4 HOH A 36 302 67 HOH TIP . E 4 HOH A 37 303 68 HOH TIP . E 4 HOH A 38 304 73 HOH TIP . E 4 HOH A 39 305 74 HOH TIP . E 4 HOH A 40 306 77 HOH TIP . E 4 HOH A 41 307 78 HOH TIP . E 4 HOH A 42 308 79 HOH TIP . E 4 HOH A 43 309 80 HOH TIP . E 4 HOH A 44 310 81 HOH TIP . E 4 HOH A 45 311 82 HOH TIP . E 4 HOH A 46 312 84 HOH TIP . E 4 HOH A 47 313 86 HOH TIP . E 4 HOH A 48 314 88 HOH TIP . E 4 HOH A 49 315 91 HOH TIP . E 4 HOH A 50 316 93 HOH TIP . E 4 HOH A 51 317 97 HOH TIP . E 4 HOH A 52 318 98 HOH TIP . E 4 HOH A 53 319 103 HOH TIP . E 4 HOH A 54 320 105 HOH TIP . E 4 HOH A 55 321 107 HOH TIP . E 4 HOH A 56 322 109 HOH TIP . E 4 HOH A 57 323 113 HOH TIP . E 4 HOH A 58 324 114 HOH TIP . E 4 HOH A 59 325 115 HOH TIP . E 4 HOH A 60 326 119 HOH TIP . E 4 HOH A 61 327 120 HOH TIP . E 4 HOH A 62 328 128 HOH TIP . E 4 HOH A 63 329 129 HOH TIP . E 4 HOH A 64 330 132 HOH TIP . E 4 HOH A 65 331 133 HOH TIP . E 4 HOH A 66 332 134 HOH TIP . E 4 HOH A 67 333 138 HOH TIP . E 4 HOH A 68 334 141 HOH TIP . E 4 HOH A 69 335 142 HOH TIP . E 4 HOH A 70 336 144 HOH TIP . E 4 HOH A 71 337 145 HOH TIP . E 4 HOH A 72 338 151 HOH TIP . E 4 HOH A 73 339 153 HOH TIP . E 4 HOH A 74 340 154 HOH TIP . E 4 HOH A 75 341 156 HOH TIP . E 4 HOH A 76 342 157 HOH TIP . E 4 HOH A 77 343 158 HOH TIP . E 4 HOH A 78 344 159 HOH TIP . E 4 HOH A 79 345 161 HOH TIP . E 4 HOH A 80 346 165 HOH TIP . E 4 HOH A 81 347 167 HOH TIP . E 4 HOH A 82 348 168 HOH TIP . E 4 HOH A 83 349 173 HOH TIP . E 4 HOH A 84 350 176 HOH TIP . E 4 HOH A 85 351 177 HOH TIP . E 4 HOH A 86 352 179 HOH TIP . E 4 HOH A 87 353 180 HOH TIP . E 4 HOH A 88 354 181 HOH TIP . E 4 HOH A 89 355 187 HOH TIP . E 4 HOH A 90 356 190 HOH TIP . E 4 HOH A 91 357 192 HOH TIP . E 4 HOH A 92 358 196 HOH TIP . E 4 HOH A 93 359 202 HOH TIP . E 4 HOH A 94 360 203 HOH TIP . E 4 HOH A 95 361 204 HOH TIP . E 4 HOH A 96 362 205 HOH TIP . E 4 HOH A 97 363 208 HOH TIP . E 4 HOH A 98 364 211 HOH TIP . E 4 HOH A 99 365 212 HOH TIP . E 4 HOH A 100 366 215 HOH TIP . E 4 HOH A 101 367 217 HOH TIP . E 4 HOH A 102 368 221 HOH TIP . E 4 HOH A 103 369 222 HOH TIP . E 4 HOH A 104 370 227 HOH TIP . F 4 HOH B 1 267 2 HOH TIP . F 4 HOH B 2 268 4 HOH TIP . F 4 HOH B 3 269 6 HOH TIP . F 4 HOH B 4 270 7 HOH TIP . F 4 HOH B 5 271 11 HOH TIP . F 4 HOH B 6 272 12 HOH TIP . F 4 HOH B 7 273 14 HOH TIP . F 4 HOH B 8 274 15 HOH TIP . F 4 HOH B 9 275 18 HOH TIP . F 4 HOH B 10 276 19 HOH TIP . F 4 HOH B 11 277 24 HOH TIP . F 4 HOH B 12 278 27 HOH TIP . F 4 HOH B 13 279 30 HOH TIP . F 4 HOH B 14 280 34 HOH TIP . F 4 HOH B 15 281 36 HOH TIP . F 4 HOH B 16 282 37 HOH TIP . F 4 HOH B 17 283 39 HOH TIP . F 4 HOH B 18 284 40 HOH TIP . F 4 HOH B 19 285 43 HOH TIP . F 4 HOH B 20 286 45 HOH TIP . F 4 HOH B 21 287 46 HOH TIP . F 4 HOH B 22 288 48 HOH TIP . F 4 HOH B 23 289 50 HOH TIP . F 4 HOH B 24 290 51 HOH TIP . F 4 HOH B 25 291 52 HOH TIP . F 4 HOH B 26 292 56 HOH TIP . F 4 HOH B 27 293 59 HOH TIP . F 4 HOH B 28 294 60 HOH TIP . F 4 HOH B 29 295 63 HOH TIP . F 4 HOH B 30 296 65 HOH TIP . F 4 HOH B 31 297 69 HOH TIP . F 4 HOH B 32 298 70 HOH TIP . F 4 HOH B 33 299 71 HOH TIP . F 4 HOH B 34 300 72 HOH TIP . F 4 HOH B 35 301 75 HOH TIP . F 4 HOH B 36 302 76 HOH TIP . F 4 HOH B 37 303 85 HOH TIP . F 4 HOH B 38 304 87 HOH TIP . F 4 HOH B 39 305 89 HOH TIP . F 4 HOH B 40 306 90 HOH TIP . F 4 HOH B 41 307 92 HOH TIP . F 4 HOH B 42 308 94 HOH TIP . F 4 HOH B 43 309 95 HOH TIP . F 4 HOH B 44 310 96 HOH TIP . F 4 HOH B 45 311 99 HOH TIP . F 4 HOH B 46 312 100 HOH TIP . F 4 HOH B 47 313 101 HOH TIP . F 4 HOH B 48 314 102 HOH TIP . F 4 HOH B 49 315 104 HOH TIP . F 4 HOH B 50 316 108 HOH TIP . F 4 HOH B 51 317 110 HOH TIP . F 4 HOH B 52 318 111 HOH TIP . F 4 HOH B 53 319 112 HOH TIP . F 4 HOH B 54 320 116 HOH TIP . F 4 HOH B 55 321 117 HOH TIP . F 4 HOH B 56 322 118 HOH TIP . F 4 HOH B 57 323 121 HOH TIP . F 4 HOH B 58 324 122 HOH TIP . F 4 HOH B 59 325 123 HOH TIP . F 4 HOH B 60 326 124 HOH TIP . F 4 HOH B 61 327 125 HOH TIP . F 4 HOH B 62 328 126 HOH TIP . F 4 HOH B 63 329 127 HOH TIP . F 4 HOH B 64 330 131 HOH TIP . F 4 HOH B 65 331 135 HOH TIP . F 4 HOH B 66 332 139 HOH TIP . F 4 HOH B 67 333 140 HOH TIP . F 4 HOH B 68 334 143 HOH TIP . F 4 HOH B 69 335 146 HOH TIP . F 4 HOH B 70 336 147 HOH TIP . F 4 HOH B 71 337 148 HOH TIP . F 4 HOH B 72 338 149 HOH TIP . F 4 HOH B 73 339 150 HOH TIP . F 4 HOH B 74 340 152 HOH TIP . F 4 HOH B 75 341 155 HOH TIP . F 4 HOH B 76 342 160 HOH TIP . F 4 HOH B 77 343 162 HOH TIP . F 4 HOH B 78 344 164 HOH TIP . F 4 HOH B 79 345 166 HOH TIP . F 4 HOH B 80 346 169 HOH TIP . F 4 HOH B 81 347 170 HOH TIP . F 4 HOH B 82 348 172 HOH TIP . F 4 HOH B 83 349 174 HOH TIP . F 4 HOH B 84 350 175 HOH TIP . F 4 HOH B 85 351 178 HOH TIP . F 4 HOH B 86 352 183 HOH TIP . F 4 HOH B 87 353 184 HOH TIP . F 4 HOH B 88 354 185 HOH TIP . F 4 HOH B 89 355 186 HOH TIP . F 4 HOH B 90 356 188 HOH TIP . F 4 HOH B 91 357 189 HOH TIP . F 4 HOH B 92 358 191 HOH TIP . F 4 HOH B 93 359 193 HOH TIP . F 4 HOH B 94 360 194 HOH TIP . F 4 HOH B 95 361 195 HOH TIP . F 4 HOH B 96 362 197 HOH TIP . F 4 HOH B 97 363 198 HOH TIP . F 4 HOH B 98 364 199 HOH TIP . F 4 HOH B 99 365 200 HOH TIP . F 4 HOH B 100 366 201 HOH TIP . F 4 HOH B 101 367 206 HOH TIP . F 4 HOH B 102 368 207 HOH TIP . F 4 HOH B 103 369 209 HOH TIP . F 4 HOH B 104 370 210 HOH TIP . F 4 HOH B 105 371 213 HOH TIP . F 4 HOH B 106 372 214 HOH TIP . F 4 HOH B 107 373 216 HOH TIP . F 4 HOH B 108 374 218 HOH TIP . F 4 HOH B 109 375 219 HOH TIP . F 4 HOH B 110 376 220 HOH TIP . F 4 HOH B 111 377 223 HOH TIP . F 4 HOH B 112 378 224 HOH TIP . F 4 HOH B 113 379 225 HOH TIP . F 4 HOH B 114 380 226 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 3HO . . . C 2 15.987 -4.594 1.178 1 47.28 ? O1 3HO 301 A 1 HETATM 2 C C1 3HO . . . C 2 16.283 -5.8 1.205 1 42.57 ? C1 3HO 301 A 1 HETATM 3 O O2 3HO . . . C 2 15.86 -6.58 2.081 1 39.71 ? O2 3HO 301 A 1 HETATM 4 C C2 3HO . . . C 2 17.182 -6.334 0.126 1 43.63 ? C2 3HO 301 A 1 HETATM 5 C C3 3HO . . . C 2 18.6 -6.546 0.654 1 41.79 ? C3 3HO 301 A 1 HETATM 6 O O3 3HO . . . C 2 19.22 -7.595 -0.113 1 45.37 ? O3 3HO 301 A 1 HETATM 7 C C4 3HO . . . C 2 19.405 -5.249 0.524 1 38.05 ? C4 3HO 301 A 1 HETATM 8 C C5 3HO . . . C 2 20.855 -5.432 0.948 1 38.37 ? C5 3HO 301 A 1 HETATM 9 C C6 3HO . . . C 2 21.613 -4.122 0.846 1 32.1 ? C6 3HO 301 A 1 HETATM 10 C C7 3HO . . . C 2 23.083 -4.322 1.162 1 30.24 ? C7 3HO 301 A 1 HETATM 11 C C8 3HO . . . C 2 23.843 -3.03 0.963 1 28.32 ? C8 3HO 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #