data_3STZ # _model_server_result.job_id mDf0q8-TlQcfH4LNX59pgA _model_server_result.datetime_utc '2024-12-01 07:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3stz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3STZ # _exptl.entry_id 3STZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3STZ _cell.length_a 155.732 _cell.length_b 155.732 _cell.length_c 76.098 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3STZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 311.464 311.464 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 311.464 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 311.464 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C SG CYS 60 C CYS 82 1_555 D S1 MTN . C MTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc1 C O THR 53 C THR 75 1_555 E K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc2 C OG1 THR 53 C THR 75 1_555 E K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.345 ? metalc ? metalc3 C O THR 53 C THR 75 1_555 F K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc4 C O VAL 54 C VAL 76 1_555 F K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.321 ? metalc ? metalc5 C O VAL 54 C VAL 76 1_555 G K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.362 ? metalc ? metalc6 C O GLY 55 C GLY 77 1_555 G K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? metalc ? metalc7 C O TYR 56 C TYR 78 1_555 H K K . C K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc8 I K K . C K 206 1_555 J O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.338 ? metalc ? metalc9 I K K . C K 206 1_555 J O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.458 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 237 n n N1 C1 MTN sing 238 n n N1 C5 MTN sing 239 n n C1 C2 MTN sing 240 n n C1 C8 MTN sing 241 n n C1 C9 MTN sing 242 n n C2 C3 MTN doub 243 n n C2 H2 MTN sing 244 n n C3 C4 MTN sing 245 n n C3 C5 MTN sing 246 n n C4 S1 MTN sing 247 n n C4 H41 MTN sing 248 n n C4 H42 MTN sing 249 n n C5 C6 MTN sing 250 n n C5 C7 MTN sing 251 n n C6 H61 MTN sing 252 n n C6 H62 MTN sing 253 n n C6 H63 MTN sing 254 n n C7 H71 MTN sing 255 n n C7 H72 MTN sing 256 n n C7 H73 MTN sing 257 n n C8 H81 MTN sing 258 n n C8 H82 MTN sing 259 n n C8 H83 MTN sing 260 n n C9 H91 MTN sing 261 n n C9 H92 MTN sing 262 n n C9 H93 MTN sing 263 n n S1 S2 MTN sing 264 n n S2 O2 MTN doub 265 n n S2 O3 MTN doub 266 n n S2 C12 MTN sing 267 n n C12 H4 MTN sing 268 n n C12 H1 MTN sing 269 n n C12 H3 MTN sing 270 n n # _atom_sites.entry_id 3STZ _atom_sites.fract_transf_matrix[1][1] 0.006421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MTN C 1 201 82 MTN R1A . E 5 K C 1 202 1 K K . F 5 K C 1 203 2 K K . G 5 K C 1 204 3 K K . H 5 K C 1 205 4 K K . I 5 K C 1 206 5 K K . J 6 HOH C 1 301 1 HOH HOH . J 6 HOH C 2 302 2 HOH HOH . J 6 HOH C 3 303 3 HOH HOH . J 6 HOH C 4 304 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . D 4 156.3 149.326 -21.261 0.1 37.47 ? O1 MTN 201 C 1 HETATM 2 N N1 MTN . . . D 4 156.248 149.054 -22.455 0.1 37.56 ? N1 MTN 201 C 1 HETATM 3 C C1 MTN . . . D 4 157.319 148.26 -23.123 0.1 37.54 ? C1 MTN 201 C 1 HETATM 4 C C2 MTN . . . D 4 156.827 148.177 -24.601 0.1 37.52 ? C2 MTN 201 C 1 HETATM 5 C C3 MTN . . . D 4 155.604 148.838 -24.805 0.8 37.35 ? C3 MTN 201 C 1 HETATM 6 C C4 MTN . . . D 4 154.962 148.852 -26.201 0.8 35.82 ? C4 MTN 201 C 1 HETATM 7 S S1 MTN . . . D 4 156.078 149.103 -27.56 0.8 34.35 ? S1 MTN 201 C 1 HETATM 8 C C5 MTN . . . D 4 155.156 149.445 -23.43 0.1 37.22 ? C5 MTN 201 C 1 HETATM 9 C C6 MTN . . . D 4 155.019 150.973 -23.589 0.1 37.36 ? C6 MTN 201 C 1 HETATM 10 C C7 MTN . . . D 4 153.785 148.856 -23.039 0.1 37.38 ? C7 MTN 201 C 1 HETATM 11 C C8 MTN . . . D 4 157.473 146.856 -22.554 0.1 37.58 ? C8 MTN 201 C 1 HETATM 12 C C9 MTN . . . D 4 158.684 148.93 -23.083 0.1 37.63 ? C9 MTN 201 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #