data_3SU8 # _model_server_result.job_id TyCmFSOfsZe0xCGgrZkoTg _model_server_result.datetime_utc '2024-11-05 00:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3su8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 3SU8 # _exptl.entry_id 3SU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.53 _cell.angle_gamma 90 _cell.entry_id 3SU8 _cell.length_a 183.45 _cell.length_b 63.81 _cell.length_c 84.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 D O2G GNP . A GNP 200 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 D O2B GNP . A GNP 200 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3SU8 _atom_sites.fract_transf_matrix[1][1] 0.005451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 201 MG MG . D 4 GNP A 1 200 200 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . D 4 4.834 -45.352 -31.075 1 99.13 ? PG GNP 200 A 1 HETATM 2 O O1G GNP . . . D 4 4.837 -46.809 -30.932 1 101.89 ? O1G GNP 200 A 1 HETATM 3 O O2G GNP . . . D 4 3.921 -44.69 -29.922 1 100.58 ? O2G GNP 200 A 1 HETATM 4 O O3G GNP . . . D 4 6.336 -44.824 -30.951 1 101.33 ? O3G GNP 200 A 1 HETATM 5 N N3B GNP . . . D 4 4.234 -44.965 -32.603 1 99.83 ? N3B GNP 200 A 1 HETATM 6 P PB GNP . . . D 4 2.595 -45.378 -32.725 1 99.74 ? PB GNP 200 A 1 HETATM 7 O O1B GNP . . . D 4 2.37 -46.78 -32.312 1 99.44 ? O1B GNP 200 A 1 HETATM 8 O O2B GNP . . . D 4 1.746 -44.436 -31.749 1 99.38 ? O2B GNP 200 A 1 HETATM 9 O O3A GNP . . . D 4 2.147 -45.258 -34.283 1 102.41 ? O3A GNP 200 A 1 HETATM 10 P PA GNP . . . D 4 1.789 -43.757 -34.803 1 102.7 ? PA GNP 200 A 1 HETATM 11 O O1A GNP . . . D 4 0.431 -43.399 -34.344 1 102.17 ? O1A GNP 200 A 1 HETATM 12 O O2A GNP . . . D 4 2.801 -42.641 -34.221 1 103.86 ? O2A GNP 200 A 1 HETATM 13 O O5' GNP . . . D 4 1.744 -43.678 -36.426 1 103.05 ? O5' GNP 200 A 1 HETATM 14 C C5' GNP . . . D 4 2.607 -44.645 -37.056 1 103.57 ? C5' GNP 200 A 1 HETATM 15 C C4' GNP . . . D 4 2.816 -44.4 -38.575 1 104.5 ? C4' GNP 200 A 1 HETATM 16 O O4' GNP . . . D 4 1.911 -45.163 -39.42 1 104.18 ? O4' GNP 200 A 1 HETATM 17 C C3' GNP . . . D 4 2.715 -42.925 -39.034 1 105.53 ? C3' GNP 200 A 1 HETATM 18 O O3' GNP . . . D 4 3.625 -42.677 -40.112 1 107.35 ? O3' GNP 200 A 1 HETATM 19 C C2' GNP . . . D 4 1.245 -42.843 -39.494 1 104.89 ? C2' GNP 200 A 1 HETATM 20 O O2' GNP . . . D 4 1.053 -41.782 -40.441 1 106.18 ? O2' GNP 200 A 1 HETATM 21 C C1' GNP . . . D 4 0.954 -44.267 -40.055 1 103.84 ? C1' GNP 200 A 1 HETATM 22 N N9 GNP . . . D 4 -0.404 -44.728 -39.712 1 103.54 ? N9 GNP 200 A 1 HETATM 23 C C8 GNP . . . D 4 -0.877 -44.931 -38.444 1 103.73 ? C8 GNP 200 A 1 HETATM 24 N N7 GNP . . . D 4 -2.116 -45.347 -38.461 1 103.03 ? N7 GNP 200 A 1 HETATM 25 C C5 GNP . . . D 4 -2.535 -45.448 -39.749 1 103 ? C5 GNP 200 A 1 HETATM 26 C C6 GNP . . . D 4 -3.776 -45.854 -40.383 1 103.89 ? C6 GNP 200 A 1 HETATM 27 O O6 GNP . . . D 4 -4.742 -46.207 -39.721 1 103.53 ? O6 GNP 200 A 1 HETATM 28 N N1 GNP . . . D 4 -3.839 -45.84 -41.758 1 103.83 ? N1 GNP 200 A 1 HETATM 29 C C2 GNP . . . D 4 -2.735 -45.445 -42.511 1 104.24 ? C2 GNP 200 A 1 HETATM 30 N N2 GNP . . . D 4 -2.833 -45.427 -43.884 1 105.15 ? N2 GNP 200 A 1 HETATM 31 N N3 GNP . . . D 4 -1.579 -45.071 -41.932 1 103.97 ? N3 GNP 200 A 1 HETATM 32 C C4 GNP . . . D 4 -1.431 -45.058 -40.574 1 103.42 ? C4 GNP 200 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #