data_3SUA # _model_server_result.job_id jbWMhxUZy3TnCawiCe_lqA _model_server_result.datetime_utc '2024-12-22 01:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":200}' # _entry.id 3SUA # _exptl.entry_id 3SUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SUA _cell.length_a 142.34 _cell.length_b 224.25 _cell.length_c 258.16 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H 1 1 B,E,I,J 2 1 C,F,K,L 3 1 A,B,C,D,E,F,G,H,I,J,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 35 A THR 35 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc2 H O2G GNP . A GNP 200 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 H O3G GNP . A GNP 200 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 B OG1 THR 35 B THR 35 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc5 J O2G GNP . B GNP 200 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 J O3G GNP . B GNP 200 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc7 C OG1 THR 35 C THR 35 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 L O2G GNP . C GNP 200 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 L O3G GNP . C GNP 200 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3SUA _atom_sites.fract_transf_matrix[1][1] 0.007025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG A 1 201 201 MG MG . H 4 GNP A 1 200 200 GNP GNP . I 3 MG B 1 201 201 MG MG . J 4 GNP B 1 200 200 GNP GNP . K 3 MG C 1 201 201 MG MG . L 4 GNP C 1 200 200 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . J 4 -60.039 37.476 -75.644 1 59.02 ? PG GNP 200 B 1 HETATM 2 O O1G GNP . . . J 4 -61.294 38.247 -75.748 1 61.81 ? O1G GNP 200 B 1 HETATM 3 O O2G GNP . . . J 4 -59.129 37.861 -76.906 1 57.45 ? O2G GNP 200 B 1 HETATM 4 O O3G GNP . . . J 4 -59.337 37.795 -74.24 1 67.71 ? O3G GNP 200 B 1 HETATM 5 N N3B GNP . . . J 4 -60.363 35.843 -75.642 1 58.16 ? N3B GNP 200 B 1 HETATM 6 P PB GNP . . . J 4 -60.508 35.035 -77.124 1 52.24 ? PB GNP 200 B 1 HETATM 7 O O1B GNP . . . J 4 -61.542 35.573 -78.043 1 52.33 ? O1B GNP 200 B 1 HETATM 8 O O2B GNP . . . J 4 -59.21 35.202 -77.963 1 47.01 ? O2B GNP 200 B 1 HETATM 9 O O3A GNP . . . J 4 -60.863 33.545 -76.712 1 56.54 ? O3A GNP 200 B 1 HETATM 10 P PA GNP . . . J 4 -59.575 32.707 -76.428 1 55.6 ? PA GNP 200 B 1 HETATM 11 O O1A GNP . . . J 4 -59.115 32.37 -77.748 1 49.97 ? O1A GNP 200 B 1 HETATM 12 O O2A GNP . . . J 4 -58.359 33.443 -75.687 1 60.67 ? O2A GNP 200 B 1 HETATM 13 O O5' GNP . . . J 4 -59.916 31.398 -75.604 1 60.49 ? O5' GNP 200 B 1 HETATM 14 C C5' GNP . . . J 4 -61.219 30.92 -75.943 1 62.04 ? C5' GNP 200 B 1 HETATM 15 C C4' GNP . . . J 4 -61.8 30.003 -74.841 1 66.83 ? C4' GNP 200 B 1 HETATM 16 O O4' GNP . . . J 4 -62.843 29.156 -75.403 1 65.44 ? O4' GNP 200 B 1 HETATM 17 C C3' GNP . . . J 4 -60.741 29.031 -74.213 1 72.26 ? C3' GNP 200 B 1 HETATM 18 O O3' GNP . . . J 4 -61.077 28.578 -72.881 1 79.87 ? O3' GNP 200 B 1 HETATM 19 C C2' GNP . . . J 4 -60.741 27.88 -75.228 1 70.79 ? C2' GNP 200 B 1 HETATM 20 O O2' GNP . . . J 4 -60.463 26.629 -74.568 1 77.52 ? O2' GNP 200 B 1 HETATM 21 C C1' GNP . . . J 4 -62.165 27.966 -75.916 1 66.84 ? C1' GNP 200 B 1 HETATM 22 N N9 GNP . . . J 4 -62.224 27.816 -77.421 1 63.29 ? N9 GNP 200 B 1 HETATM 23 C C8 GNP . . . J 4 -61.802 28.691 -78.405 1 58.68 ? C8 GNP 200 B 1 HETATM 24 N N7 GNP . . . J 4 -62.001 28.221 -79.609 1 56.95 ? N7 GNP 200 B 1 HETATM 25 C C5 GNP . . . J 4 -62.581 26.983 -79.482 1 61.22 ? C5 GNP 200 B 1 HETATM 26 C C6 GNP . . . J 4 -63.061 25.959 -80.394 1 66.55 ? C6 GNP 200 B 1 HETATM 27 O O6 GNP . . . J 4 -63.006 26.117 -81.583 1 65.91 ? O6 GNP 200 B 1 HETATM 28 N N1 GNP . . . J 4 -63.598 24.79 -79.916 1 71.81 ? N1 GNP 200 B 1 HETATM 29 C C2 GNP . . . J 4 -63.709 24.584 -78.558 1 73.17 ? C2 GNP 200 B 1 HETATM 30 N N2 GNP . . . J 4 -64.253 23.413 -78.109 1 78.83 ? N2 GNP 200 B 1 HETATM 31 N N3 GNP . . . J 4 -63.293 25.51 -77.679 1 70.48 ? N3 GNP 200 B 1 HETATM 32 C C4 GNP . . . J 4 -62.732 26.71 -78.087 1 65.07 ? C4 GNP 200 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #