data_3SUA
#
_model_server_result.job_id            VLzBXMCiKnkpmJfP9OYaSw 
_model_server_result.datetime_utc      '2024-12-22 01:27:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sua 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":200}' 
#
_entry.id    3SUA 
#
_exptl.entry_id    3SUA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SUA 
_cell.length_a            142.34 
_cell.length_b            224.25 
_cell.length_c            258.16 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SUA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H 1 1 
B,E,I,J 2 1 
C,F,K,L 3 1 
A,B,C,D,E,F,G,H,I,J,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 35 A THR 35 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc2 H O2G GNP . A GNP 200 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc3 H O3G GNP . A GNP 200 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc4 B OG1 THR 35 B THR 35 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc5 J O2G GNP . B GNP 200 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc6 J O3G GNP . B GNP 200 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc7 C OG1 THR 35 C THR 35 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 L O2G GNP . C GNP 200 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc9 L O3G GNP . C GNP 200 1_555 K MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     3SUA 
_atom_sites.fract_transf_matrix[1][1]    0.007025 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 MG A 1 201 201 MG MG . 
H 4 GNP A 1 200 200 GNP GNP . 
I 3 MG B 1 201 201 MG MG . 
J 4 GNP B 1 200 200 GNP GNP . 
K 3 MG C 1 201 201 MG MG . 
L 4 GNP C 1 200 200 GNP GNP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . L 4 -45.039 15.976 -25.847 1 105.75 ? PG GNP 200 C 1 
HETATM 2 O O1G GNP . . . L 4 -46.187 15.119 -26.161 1 114.81 ? O1G GNP 200 C 1 
HETATM 3 O O2G GNP . . . L 4 -43.711 15.066 -25.896 1 99.88 ? O2G GNP 200 C 1 
HETATM 4 O O3G GNP . . . L 4 -45.014 17.208 -26.887 1 107.69 ? O3G GNP 200 C 1 
HETATM 5 N N3B GNP . . . L 4 -45.204 16.655 -24.329 1 108.22 ? N3B GNP 200 C 1 
HETATM 6 P PB GNP . . . L 4 -44.656 15.778 -23.001 1 108.01 ? PB GNP 200 C 1 
HETATM 7 O O1B GNP . . . L 4 -45.256 14.45 -22.829 1 111.82 ? O1B GNP 200 C 1 
HETATM 8 O O2B GNP . . . L 4 -43.137 15.444 -23.124 1 100.36 ? O2B GNP 200 C 1 
HETATM 9 O O3A GNP . . . L 4 -45.038 16.718 -21.764 1 114.26 ? O3A GNP 200 C 1 
HETATM 10 P PA GNP . . . L 4 -43.903 17.792 -21.47 1 109.91 ? PA GNP 200 C 1 
HETATM 11 O O1A GNP . . . L 4 -42.913 17.02 -20.741 1 106.21 ? O1A GNP 200 C 1 
HETATM 12 O O2A GNP . . . L 4 -43.16 18.456 -22.734 1 105.35 ? O2A GNP 200 C 1 
HETATM 13 O O5' GNP . . . L 4 -44.473 18.972 -20.561 1 115.86 ? O5' GNP 200 C 1 
HETATM 14 C C5' GNP . . . L 4 -45.487 18.484 -19.667 1 122.45 ? C5' GNP 200 C 1 
HETATM 15 C C4' GNP . . . L 4 -46.401 19.622 -19.16 1 129.74 ? C4' GNP 200 C 1 
HETATM 16 O O4' GNP . . . L 4 -47.035 19.215 -17.916 1 134.19 ? O4' GNP 200 C 1 
HETATM 17 C C3' GNP . . . L 4 -45.638 20.937 -18.835 1 129.39 ? C3' GNP 200 C 1 
HETATM 18 O O3' GNP . . . L 4 -46.466 22.11 -18.915 1 137.3 ? O3' GNP 200 C 1 
HETATM 19 C C2' GNP . . . L 4 -45.139 20.655 -17.397 1 129.97 ? C2' GNP 200 C 1 
HETATM 20 O O2' GNP . . . L 4 -45.061 21.875 -16.635 1 134.92 ? O2' GNP 200 C 1 
HETATM 21 C C1' GNP . . . L 4 -46.139 19.587 -16.831 1 133.43 ? C1' GNP 200 C 1 
HETATM 22 N N9 GNP . . . L 4 -45.569 18.42 -16.076 1 131.37 ? N9 GNP 200 C 1 
HETATM 23 C C8 GNP . . . L 4 -44.848 17.343 -16.554 1 126.72 ? C8 GNP 200 C 1 
HETATM 24 N N7 GNP . . . L 4 -44.501 16.512 -15.598 1 127 ? N7 GNP 200 C 1 
HETATM 25 C C5 GNP . . . L 4 -44.977 17.001 -14.42 1 132.1 ? C5 GNP 200 C 1 
HETATM 26 C C6 GNP . . . L 4 -44.95 16.57 -13.037 1 136.71 ? C6 GNP 200 C 1 
HETATM 27 O O6 GNP . . . L 4 -44.423 15.539 -12.707 1 135.28 ? O6 GNP 200 C 1 
HETATM 28 N N1 GNP . . . L 4 -45.542 17.33 -12.065 1 142.07 ? N1 GNP 200 C 1 
HETATM 29 C C2 GNP . . . L 4 -46.191 18.497 -12.4 1 144.8 ? C2 GNP 200 C 1 
HETATM 30 N N2 GNP . . . L 4 -46.779 19.24 -11.395 1 151.96 ? N2 GNP 200 C 1 
HETATM 31 N N3 GNP . . . L 4 -46.244 18.912 -13.682 1 141.52 ? N3 GNP 200 C 1 
HETATM 32 C C4 GNP . . . L 4 -45.665 18.215 -14.712 1 135.12 ? C4 GNP 200 C 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#