data_3SV8 # _model_server_result.job_id g9-Wob1RCfWg7HjkvLNNcQ _model_server_result.datetime_utc '2025-06-19 03:56:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3SV8 # _exptl.entry_id 3SV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 681.865 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SV8 _cell.length_a 69.532 _cell.length_b 69.532 _cell.length_c 79.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CAI SV6 . A SV6 1 1_555 A OG SER 160 A SER 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? metalc ? metalc1 D ZN ZN . A ZN 3 1_555 E O HOH . A HOH 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 D ZN ZN . A ZN 3 1_555 A SG CYS 118 A CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 D ZN ZN . A ZN 3 1_555 A SG CYS 120 A CYS 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C36 H55 N7 O6' _chem_comp.formula_weight 681.865 _chem_comp.id SV6 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TELAPREVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C SV6 doub 303 n n C CA SV6 sing 304 n n C NAE SV6 sing 305 n n CD1 N SV6 sing 306 n n N CAV SV6 sing 307 n n N CA SV6 sing 308 n n CB CA SV6 sing 309 n n CA HA SV6 sing 310 n n CG CB SV6 sing 311 n n CB CBE SV6 sing 312 n n CB HB SV6 sing 313 n n CD1 CG SV6 sing 314 n n CG CD2 SV6 sing 315 n n CG HG SV6 sing 316 n n CAN NAA SV6 sing 317 n n NAA CAM SV6 sing 318 n n NAA HNAA SV6 sing 319 n n CAW NAC SV6 sing 320 n n CAX NAC SV6 sing 321 n n NAC HNAC SV6 sing 322 n n CBB NAD SV6 sing 323 n n NAD CAY SV6 sing 324 n n NAD HNAD SV6 sing 325 n n CAH NAE SV6 sing 326 n n NAE HNAE SV6 sing 327 n n CBO NAF SV6 doub 328 n y NAF CBN SV6 sing 329 n y CBP NAG SV6 doub 330 n y NAG CBQ SV6 sing 331 n y CAH CAI SV6 sing 332 n n CAH CAJ SV6 sing 333 n n CAH HAH SV6 sing 334 n n CAM CAI SV6 sing 335 n n OBR CAI SV6 sing 336 n n CAI HAI SV6 sing 337 n n CAK CAJ SV6 sing 338 n n CAJ HAJ SV6 sing 339 n n CAJ HAJA SV6 sing 340 n n CAK CAL SV6 sing 341 n n CAK HAK SV6 sing 342 n n CAK HAKA SV6 sing 343 n n CAL HAL SV6 sing 344 n n CAL HALA SV6 sing 345 n n CAL HALB SV6 sing 346 n n CAM OBS SV6 doub 347 n n CAP CAN SV6 sing 348 n n CAO CAN SV6 sing 349 n n CAN HAN SV6 sing 350 n n CAP CAO SV6 sing 351 n n CAO HAO SV6 sing 352 n n CAO HAOA SV6 sing 353 n n CAP HAP SV6 sing 354 n n CAP HAPA SV6 sing 355 n n CAW CAV SV6 sing 356 n n CAV OBT SV6 doub 357 n n CAZ CAW SV6 sing 358 n n CAW HAW SV6 sing 359 n n OBU CAX SV6 doub 360 n n CAX CAY SV6 sing 361 n n CAY CBH SV6 sing 362 n n CAY HAY SV6 sing 363 n n CBA CAZ SV6 sing 364 n n CBD CAZ SV6 sing 365 n n CAZ CBC SV6 sing 366 n n CBA HBA SV6 sing 367 n n CBA HBAA SV6 sing 368 n n CBA HBAB SV6 sing 369 n n CBN CBB SV6 sing 370 n n CBB OBW SV6 doub 371 n n CBC HBC SV6 sing 372 n n CBC HBCA SV6 sing 373 n n CBC HBCB SV6 sing 374 n n CBD HBD SV6 sing 375 n n CBD HBDA SV6 sing 376 n n CBD HBDB SV6 sing 377 n n CBF CBE SV6 sing 378 n n CBE HBE SV6 sing 379 n n CBE HBEA SV6 sing 380 n n CD2 CBF SV6 sing 381 n n CBF HBF SV6 sing 382 n n CBF HBFA SV6 sing 383 n n CBH CBM SV6 sing 384 n n CBH CBI SV6 sing 385 n n CBH HBH SV6 sing 386 n n CBI CBJ SV6 sing 387 n n CBI HBI SV6 sing 388 n n CBI HBIA SV6 sing 389 n n CBJ CBK SV6 sing 390 n n CBJ HBJ SV6 sing 391 n n CBJ HBJA SV6 sing 392 n n CBL CBK SV6 sing 393 n n CBK HBK SV6 sing 394 n n CBK HBKA SV6 sing 395 n n CBM CBL SV6 sing 396 n n CBL HBL SV6 sing 397 n n CBL HBLA SV6 sing 398 n n CBM HBM SV6 sing 399 n n CBM HBMA SV6 sing 400 n n CBQ CBN SV6 doub 401 n y CBP CBO SV6 sing 402 n y CBO HBO SV6 sing 403 n n CBP HBP SV6 sing 404 n n CBQ HBQ SV6 sing 405 n n OBR HOBR SV6 sing 406 n n CD1 HD1 SV6 sing 407 n n CD1 HD1A SV6 sing 408 n n CD2 HD2 SV6 sing 409 n n CD2 HD2A SV6 sing 410 n n # _atom_sites.entry_id 3SV8 _atom_sites.fract_transf_matrix[1][1] 0.014382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SV6 A 1 1 1 SV6 SV6 . C 3 GOL A 1 2 2 GOL GOL . D 4 ZN A 1 3 3 ZN ZN . E 5 HOH A 1 11 11 HOH HOH . E 5 HOH A 2 12 12 HOH HOH . E 5 HOH A 3 13 13 HOH HOH . E 5 HOH A 4 14 14 HOH HOH . E 5 HOH A 5 15 15 HOH HOH . E 5 HOH A 6 16 16 HOH HOH . E 5 HOH A 7 17 17 HOH HOH . E 5 HOH A 8 18 18 HOH HOH . E 5 HOH A 9 19 19 HOH HOH . E 5 HOH A 10 20 20 HOH HOH . E 5 HOH A 11 21 21 HOH HOH . E 5 HOH A 12 22 22 HOH HOH . E 5 HOH A 13 23 23 HOH HOH . E 5 HOH A 14 24 24 HOH HOH . E 5 HOH A 15 25 25 HOH HOH . E 5 HOH A 16 26 26 HOH HOH . E 5 HOH A 17 27 27 HOH HOH . E 5 HOH A 18 28 28 HOH HOH . E 5 HOH A 19 29 29 HOH HOH . E 5 HOH A 20 30 30 HOH HOH . E 5 HOH A 21 31 31 HOH HOH . E 5 HOH A 22 32 32 HOH HOH . E 5 HOH A 23 33 33 HOH HOH . E 5 HOH A 24 34 34 HOH HOH . E 5 HOH A 25 35 35 HOH HOH . E 5 HOH A 26 36 36 HOH HOH . E 5 HOH A 27 37 37 HOH HOH . E 5 HOH A 28 38 38 HOH HOH . E 5 HOH A 29 39 39 HOH HOH . E 5 HOH A 30 40 40 HOH HOH . E 5 HOH A 31 41 41 HOH HOH . E 5 HOH A 32 42 42 HOH HOH . E 5 HOH A 33 43 43 HOH HOH . E 5 HOH A 34 44 44 HOH HOH . E 5 HOH A 35 45 45 HOH HOH . E 5 HOH A 36 46 46 HOH HOH . E 5 HOH A 37 47 47 HOH HOH . E 5 HOH A 38 48 48 HOH HOH . E 5 HOH A 39 49 49 HOH HOH . E 5 HOH A 40 50 50 HOH HOH . E 5 HOH A 41 51 51 HOH HOH . E 5 HOH A 42 52 52 HOH HOH . E 5 HOH A 43 53 53 HOH HOH . E 5 HOH A 44 54 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBN SV6 . . . B 2 -0.279 19.796 15.7 1 45.14 ? CBN SV6 1 A 1 HETATM 2 C CBO SV6 . . . B 2 0.28 21.179 17.499 1 46.18 ? CBO SV6 1 A 1 HETATM 3 C CBP SV6 . . . B 2 1.154 20.201 17.96 1 47.66 ? CBP SV6 1 A 1 HETATM 4 C CBB SV6 . . . B 2 -1.076 19.571 14.446 1 43.19 ? CBB SV6 1 A 1 HETATM 5 C CBQ SV6 . . . B 2 0.596 18.816 16.177 1 47.19 ? CBQ SV6 1 A 1 HETATM 6 O OBW SV6 . . . B 2 -1.908 20.397 14.103 1 41.53 ? OBW SV6 1 A 1 HETATM 7 N NAF SV6 . . . B 2 -0.415 20.958 16.38 1 45.97 ? NAF SV6 1 A 1 HETATM 8 N NAG SV6 . . . B 2 1.3 19.043 17.296 1 48.22 ? NAG SV6 1 A 1 HETATM 9 N NAD SV6 . . . B 2 -0.844 18.465 13.739 1 42.86 ? NAD SV6 1 A 1 HETATM 10 C CAY SV6 . . . B 2 -1.58 18.168 12.523 1 41.79 ? CAY SV6 1 A 1 HETATM 11 C CAX SV6 . . . B 2 -2.713 17.229 12.796 1 40.97 ? CAX SV6 1 A 1 HETATM 12 O OBU SV6 . . . B 2 -2.498 16.17 13.375 1 37.31 ? OBU SV6 1 A 1 HETATM 13 C CBH SV6 . . . B 2 -0.629 17.498 11.531 1 42.98 ? CBH SV6 1 A 1 HETATM 14 C CBI SV6 . . . B 2 0.639 18.333 11.308 1 43.5 ? CBI SV6 1 A 1 HETATM 15 C CBJ SV6 . . . B 2 1.53 17.81 10.183 1 43.71 ? CBJ SV6 1 A 1 HETATM 16 C CBK SV6 . . . B 2 0.737 17.457 8.927 1 44.58 ? CBK SV6 1 A 1 HETATM 17 C CBL SV6 . . . B 2 -0.447 16.54 9.233 1 43.67 ? CBL SV6 1 A 1 HETATM 18 C CBM SV6 . . . B 2 -1.365 17.232 10.219 1 42.56 ? CBM SV6 1 A 1 HETATM 19 N NAC SV6 . . . B 2 -3.892 17.663 12.333 1 40.74 ? NAC SV6 1 A 1 HETATM 20 C CAW SV6 . . . B 2 -5.123 16.903 12.446 1 40.97 ? CAW SV6 1 A 1 HETATM 21 C CAZ SV6 . . . B 2 -6.165 17.579 13.339 1 41.44 ? CAZ SV6 1 A 1 HETATM 22 C CBC SV6 . . . B 2 -6.565 18.96 12.824 1 40.89 ? CBC SV6 1 A 1 HETATM 23 C CBD SV6 . . . B 2 -5.578 17.762 14.75 1 40.03 ? CBD SV6 1 A 1 HETATM 24 C CBA SV6 . . . B 2 -7.378 16.646 13.4 1 39.34 ? CBA SV6 1 A 1 HETATM 25 C CAV SV6 . . . B 2 -5.62 16.59 11.049 1 41.7 ? CAV SV6 1 A 1 HETATM 26 O OBT SV6 . . . B 2 -5.987 17.498 10.318 1 40.82 ? OBT SV6 1 A 1 HETATM 27 C C SV6 . . . B 2 -7.586 14.945 9.243 1 41.82 ? C SV6 1 A 1 HETATM 28 N N SV6 . . . B 2 -5.602 15.302 10.645 1 41.63 ? N SV6 1 A 1 HETATM 29 O O SV6 . . . B 2 -8.252 14.39 10.122 1 42.77 ? O SV6 1 A 1 HETATM 30 C CA SV6 . . . B 2 -6.072 14.899 9.312 1 41.62 ? CA SV6 1 A 1 HETATM 31 C CB SV6 . . . B 2 -5.498 13.501 9.119 1 41.93 ? CB SV6 1 A 1 HETATM 32 C CG SV6 . . . B 2 -4.785 13.108 10.403 1 42.04 ? CG SV6 1 A 1 HETATM 33 C CBE SV6 . . . B 2 -4.453 13.412 8.007 1 42.26 ? CBE SV6 1 A 1 HETATM 34 C CBF SV6 . . . B 2 -3.098 13.575 8.701 1 42.72 ? CBF SV6 1 A 1 HETATM 35 C CD1 SV6 . . . B 2 -5.166 14.15 11.436 1 41.49 ? CD1 SV6 1 A 1 HETATM 36 C CD2 SV6 . . . B 2 -3.28 13.096 10.139 1 41.69 ? CD2 SV6 1 A 1 HETATM 37 N NAA SV6 . . . B 2 -12.172 13.849 7.641 1 42.22 ? NAA SV6 1 A 1 HETATM 38 N NAE SV6 . . . B 2 -8.167 15.614 8.235 1 41.03 ? NAE SV6 1 A 1 HETATM 39 C CAH SV6 . . . B 2 -9.627 15.739 8.166 1 39.48 ? CAH SV6 1 A 1 HETATM 40 C CAI SV6 . . . B 2 -10.217 15.079 6.906 1 37.67 ? CAI SV6 1 A 1 HETATM 41 C CAJ SV6 . . . B 2 -9.87 17.247 8.202 1 38.49 ? CAJ SV6 1 A 1 HETATM 42 C CAK SV6 . . . B 2 -9.441 17.85 9.538 1 38.47 ? CAK SV6 1 A 1 HETATM 43 C CAL SV6 . . . B 2 -9.457 19.366 9.522 1 37.21 ? CAL SV6 1 A 1 HETATM 44 C CAM SV6 . . . B 2 -11.724 14.958 7.029 1 40.78 ? CAM SV6 1 A 1 HETATM 45 C CAN SV6 . . . B 2 -13.603 13.582 7.811 1 43.26 ? CAN SV6 1 A 1 HETATM 46 C CAO SV6 . . . B 2 -13.976 12.934 9.141 1 43.39 ? CAO SV6 1 A 1 HETATM 47 C CAP SV6 . . . B 2 -14.205 14.426 8.93 1 44.09 ? CAP SV6 1 A 1 HETATM 48 O OBR SV6 . . . B 2 -9.745 13.722 6.754 1 37.25 ? OBR SV6 1 A 1 HETATM 49 O OBS SV6 . . . B 2 -12.472 15.83 6.581 1 39.01 ? OBS SV6 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #