data_3SV9
#
_model_server_result.job_id            hb0-iTqm5MQlGcv24c5NMA 
_model_server_result.datetime_utc      '2024-11-14 20:04:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2}' 
#
_entry.id    3SV9 
#
_exptl.entry_id    3SV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SV9 
_cell.length_a            54.837 
_cell.length_b            58.676 
_cell.length_c            60.726 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E ZN ZN . A ZN 4 1_555 F O HOH . A HOH 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 E ZN ZN . A ZN 4 1_555 A SG CYS 118 A CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc3 E ZN ZN . A ZN 4 1_555 A SG CYS 120 A CYS 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc4 E ZN ZN . A ZN 4 1_555 A SG CYS 166 A CYS 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3SV9 
_atom_sites.fract_transf_matrix[1][1]    0.018236 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017043 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016467 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SV6 A 1 1 1 SV6 SV6 . 
C 3 GOL A 1 2 2 GOL GOL . 
D 4 SO4 A 1 3 3 SO4 SO4 . 
E 5 ZN A 1 4 4 ZN ZN . 
F 6 HOH A 1 11 11 HOH HOH . 
F 6 HOH A 2 12 12 HOH HOH . 
F 6 HOH A 3 13 13 HOH HOH . 
F 6 HOH A 4 14 14 HOH HOH . 
F 6 HOH A 5 15 15 HOH HOH . 
F 6 HOH A 6 16 16 HOH HOH . 
F 6 HOH A 7 17 17 HOH HOH . 
F 6 HOH A 8 18 18 HOH HOH . 
F 6 HOH A 9 19 19 HOH HOH . 
F 6 HOH A 10 20 20 HOH HOH . 
F 6 HOH A 11 21 21 HOH HOH . 
F 6 HOH A 12 22 22 HOH HOH . 
F 6 HOH A 13 23 23 HOH HOH . 
F 6 HOH A 14 24 24 HOH HOH . 
F 6 HOH A 15 25 25 HOH HOH . 
F 6 HOH A 16 26 26 HOH HOH . 
F 6 HOH A 17 27 27 HOH HOH . 
F 6 HOH A 18 28 28 HOH HOH . 
F 6 HOH A 19 29 29 HOH HOH . 
F 6 HOH A 20 30 30 HOH HOH . 
F 6 HOH A 21 31 31 HOH HOH . 
F 6 HOH A 22 32 32 HOH HOH . 
F 6 HOH A 23 33 33 HOH HOH . 
F 6 HOH A 24 34 34 HOH HOH . 
F 6 HOH A 25 35 35 HOH HOH . 
F 6 HOH A 26 36 36 HOH HOH . 
F 6 HOH A 27 37 37 HOH HOH . 
F 6 HOH A 28 38 38 HOH HOH . 
F 6 HOH A 29 39 39 HOH HOH . 
F 6 HOH A 30 40 40 HOH HOH . 
F 6 HOH A 31 41 41 HOH HOH . 
F 6 HOH A 32 42 42 HOH HOH . 
F 6 HOH A 33 43 43 HOH HOH . 
F 6 HOH A 34 44 44 HOH HOH . 
F 6 HOH A 35 45 45 HOH HOH . 
F 6 HOH A 36 46 46 HOH HOH . 
F 6 HOH A 37 47 47 HOH HOH . 
F 6 HOH A 38 48 48 HOH HOH . 
F 6 HOH A 39 49 49 HOH HOH . 
F 6 HOH A 40 50 50 HOH HOH . 
F 6 HOH A 41 51 51 HOH HOH . 
F 6 HOH A 42 52 52 HOH HOH . 
F 6 HOH A 43 53 53 HOH HOH . 
F 6 HOH A 44 54 54 HOH HOH . 
F 6 HOH A 45 55 55 HOH HOH . 
F 6 HOH A 46 56 56 HOH HOH . 
F 6 HOH A 47 57 57 HOH HOH . 
F 6 HOH A 48 58 58 HOH HOH . 
F 6 HOH A 49 59 59 HOH HOH . 
F 6 HOH A 50 60 60 HOH HOH . 
F 6 HOH A 51 61 61 HOH HOH . 
F 6 HOH A 52 62 62 HOH HOH . 
F 6 HOH A 53 63 63 HOH HOH . 
F 6 HOH A 54 64 64 HOH HOH . 
F 6 HOH A 55 65 65 HOH HOH . 
F 6 HOH A 56 66 66 HOH HOH . 
F 6 HOH A 57 67 67 HOH HOH . 
F 6 HOH A 58 68 68 HOH HOH . 
F 6 HOH A 59 69 69 HOH HOH . 
F 6 HOH A 60 70 70 HOH HOH . 
F 6 HOH A 61 71 71 HOH HOH . 
F 6 HOH A 62 72 72 HOH HOH . 
F 6 HOH A 63 73 73 HOH HOH . 
F 6 HOH A 64 74 74 HOH HOH . 
F 6 HOH A 65 75 75 HOH HOH . 
F 6 HOH A 66 76 76 HOH HOH . 
F 6 HOH A 67 77 77 HOH HOH . 
F 6 HOH A 68 78 78 HOH HOH . 
F 6 HOH A 69 79 79 HOH HOH . 
F 6 HOH A 70 80 80 HOH HOH . 
F 6 HOH A 71 81 81 HOH HOH . 
F 6 HOH A 72 82 82 HOH HOH . 
F 6 HOH A 73 83 83 HOH HOH . 
F 6 HOH A 74 84 84 HOH HOH . 
F 6 HOH A 75 85 85 HOH HOH . 
F 6 HOH A 76 86 86 HOH HOH . 
F 6 HOH A 77 87 87 HOH HOH . 
F 6 HOH A 78 88 88 HOH HOH . 
F 6 HOH A 79 89 89 HOH HOH . 
F 6 HOH A 80 90 90 HOH HOH . 
F 6 HOH A 81 91 91 HOH HOH . 
F 6 HOH A 82 92 92 HOH HOH . 
F 6 HOH A 83 93 93 HOH HOH . 
F 6 HOH A 84 94 94 HOH HOH . 
F 6 HOH A 85 95 95 HOH HOH . 
F 6 HOH A 86 96 96 HOH HOH . 
F 6 HOH A 87 97 97 HOH HOH . 
F 6 HOH A 88 98 98 HOH HOH . 
F 6 HOH A 89 99 99 HOH HOH . 
F 6 HOH A 90 100 100 HOH HOH . 
F 6 HOH A 91 101 101 HOH HOH . 
F 6 HOH A 92 102 102 HOH HOH . 
F 6 HOH A 93 103 103 HOH HOH . 
F 6 HOH A 94 104 104 HOH HOH . 
F 6 HOH A 95 105 105 HOH HOH . 
F 6 HOH A 96 106 106 HOH HOH . 
F 6 HOH A 97 107 107 HOH HOH . 
F 6 HOH A 98 108 108 HOH HOH . 
F 6 HOH A 99 109 109 HOH HOH . 
F 6 HOH A 100 110 110 HOH HOH . 
F 6 HOH A 101 111 111 HOH HOH . 
F 6 HOH A 102 112 112 HOH HOH . 
F 6 HOH A 103 113 113 HOH HOH . 
F 6 HOH A 104 114 114 HOH HOH . 
F 6 HOH A 105 115 115 HOH HOH . 
F 6 HOH A 106 116 116 HOH HOH . 
F 6 HOH A 107 117 117 HOH HOH . 
F 6 HOH A 108 118 118 HOH HOH . 
F 6 HOH A 109 119 119 HOH HOH . 
F 6 HOH A 110 120 120 HOH HOH . 
F 6 HOH A 111 121 121 HOH HOH . 
F 6 HOH A 112 122 122 HOH HOH . 
F 6 HOH A 113 123 123 HOH HOH . 
F 6 HOH A 114 124 124 HOH HOH . 
F 6 HOH A 115 125 125 HOH HOH . 
F 6 HOH A 116 126 126 HOH HOH . 
F 6 HOH A 117 127 127 HOH HOH . 
F 6 HOH A 118 128 128 HOH HOH . 
F 6 HOH A 119 129 129 HOH HOH . 
F 6 HOH A 120 130 130 HOH HOH . 
F 6 HOH A 121 131 131 HOH HOH . 
F 6 HOH A 122 132 132 HOH HOH . 
F 6 HOH A 123 133 133 HOH HOH . 
F 6 HOH A 124 134 134 HOH HOH . 
F 6 HOH A 125 135 135 HOH HOH . 
F 6 HOH A 126 136 136 HOH HOH . 
F 6 HOH A 127 137 137 HOH HOH . 
F 6 HOH A 128 138 138 HOH HOH . 
F 6 HOH A 129 139 139 HOH HOH . 
F 6 HOH A 130 140 140 HOH HOH . 
F 6 HOH A 131 141 141 HOH HOH . 
F 6 HOH A 132 142 142 HOH HOH . 
F 6 HOH A 133 143 143 HOH HOH . 
F 6 HOH A 134 144 144 HOH HOH . 
F 6 HOH A 135 145 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 14.056 -16.326 21.719 1 33.13 ? C1 GOL 2 A 1 
HETATM 2 O O1 GOL . . . C 3 14.805 -15.849 20.635 1 33.14 ? O1 GOL 2 A 1 
HETATM 3 C C2 GOL . . . C 3 14.955 -17.242 22.527 1 32.91 ? C2 GOL 2 A 1 
HETATM 4 O O2 GOL . . . C 3 15.506 -18.205 21.653 1 33.06 ? O2 GOL 2 A 1 
HETATM 5 C C3 GOL . . . C 3 14.13 -17.912 23.622 1 32.93 ? C3 GOL 2 A 1 
HETATM 6 O O3 GOL . . . C 3 14.286 -17.151 24.799 1 36.97 ? O3 GOL 2 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#