data_3SVF # _model_server_result.job_id YG0iw2h3eAgTLoUdsGddPQ _model_server_result.datetime_utc '2024-12-27 02:42:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3svf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3SVF # _exptl.entry_id 3SVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-6-(3,5-dimethyl-1,2-oxazol-4-yl)-4-(2-hydroxyethoxy)-3-methyl-3,4-dihydroquinazolin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SVF _cell.length_a 43.56 _cell.length_b 48.98 _cell.length_c 60.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N3 O4' _chem_comp.formula_weight 317.34 _chem_comp.id WDR _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-6-(3,5-dimethyl-1,2-oxazol-4-yl)-4-(2-hydroxyethoxy)-3-methyl-3,4-dihydroquinazolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB CAA WDR sing 376 n n CAA OAS WDR doub 377 n n CAA NAQ WDR sing 378 n n CAC NAB WDR sing 379 n n NAB HNAB WDR sing 380 n n CAO CAC WDR doub 381 n y CAC CAD WDR sing 382 n y CAF CAD WDR doub 383 n y CAD CAE WDR sing 384 n n CAE NAQ WDR sing 385 n n CAE OAT WDR sing 386 n n CAE HAE WDR sing 387 n n CAG CAF WDR sing 388 n y CAF HAF WDR sing 389 n n CAP CAG WDR doub 390 n y CAH CAG WDR sing 391 n n CAL CAH WDR sing 392 n y CAH CAI WDR doub 393 n y OAJ CAI WDR sing 394 n y CAI CAK WDR sing 395 n n NAM OAJ WDR sing 396 n y CAK HAK WDR sing 397 n n CAK HAKA WDR sing 398 n n CAK HAKB WDR sing 399 n n CAN CAL WDR sing 400 n n CAL NAM WDR doub 401 n y CAN HAN WDR sing 402 n n CAN HANA WDR sing 403 n n CAN HANB WDR sing 404 n n CAP CAO WDR sing 405 n y CAO HAO WDR sing 406 n n CAP HAP WDR sing 407 n n NAQ CAR WDR sing 408 n n CAR HAR WDR sing 409 n n CAR HARA WDR sing 410 n n CAR HARB WDR sing 411 n n CAU OAT WDR sing 412 n n CAU CAV WDR sing 413 n n CAU HAU WDR sing 414 n n CAU HAUA WDR sing 415 n n CAV OAW WDR sing 416 n n CAV HAV WDR sing 417 n n CAV HAVA WDR sing 418 n n OAW HOAW WDR sing 419 n n # _atom_sites.entry_id 3SVF _atom_sites.fract_transf_matrix[1][1] 0.022957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WDR A 1 1 1 WDR WDR . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 11 11 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 13 13 HOH HOH . C 3 HOH A 12 14 14 HOH HOH . C 3 HOH A 13 15 15 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 26 26 HOH HOH . C 3 HOH A 23 27 27 HOH HOH . C 3 HOH A 24 28 28 HOH HOH . C 3 HOH A 25 29 29 HOH HOH . C 3 HOH A 26 30 30 HOH HOH . C 3 HOH A 27 31 31 HOH HOH . C 3 HOH A 28 32 32 HOH HOH . C 3 HOH A 29 33 33 HOH HOH . C 3 HOH A 30 35 35 HOH HOH . C 3 HOH A 31 37 37 HOH HOH . C 3 HOH A 32 38 38 HOH HOH . C 3 HOH A 33 39 39 HOH HOH . C 3 HOH A 34 40 40 HOH HOH . C 3 HOH A 35 41 41 HOH HOH . C 3 HOH A 36 169 1 HOH HOH . C 3 HOH A 37 170 42 HOH HOH . C 3 HOH A 38 171 43 HOH HOH . C 3 HOH A 39 172 44 HOH HOH . C 3 HOH A 40 173 45 HOH HOH . C 3 HOH A 41 174 46 HOH HOH . C 3 HOH A 42 175 48 HOH HOH . C 3 HOH A 43 176 53 HOH HOH . C 3 HOH A 44 177 54 HOH HOH . C 3 HOH A 45 178 55 HOH HOH . C 3 HOH A 46 179 56 HOH HOH . C 3 HOH A 47 180 58 HOH HOH . C 3 HOH A 48 181 60 HOH HOH . C 3 HOH A 49 182 61 HOH HOH . C 3 HOH A 50 183 62 HOH HOH . C 3 HOH A 51 184 63 HOH HOH . C 3 HOH A 52 185 65 HOH HOH . C 3 HOH A 53 186 66 HOH HOH . C 3 HOH A 54 187 67 HOH HOH . C 3 HOH A 55 188 68 HOH HOH . C 3 HOH A 56 189 69 HOH HOH . C 3 HOH A 57 190 70 HOH HOH . C 3 HOH A 58 191 71 HOH HOH . C 3 HOH A 59 192 72 HOH HOH . C 3 HOH A 60 193 73 HOH HOH . C 3 HOH A 61 194 74 HOH HOH . C 3 HOH A 62 195 75 HOH HOH . C 3 HOH A 63 196 76 HOH HOH . C 3 HOH A 64 197 77 HOH HOH . C 3 HOH A 65 198 78 HOH HOH . C 3 HOH A 66 199 79 HOH HOH . C 3 HOH A 67 200 80 HOH HOH . C 3 HOH A 68 201 81 HOH HOH . C 3 HOH A 69 202 82 HOH HOH . C 3 HOH A 70 203 83 HOH HOH . C 3 HOH A 71 204 84 HOH HOH . C 3 HOH A 72 205 85 HOH HOH . C 3 HOH A 73 206 86 HOH HOH . C 3 HOH A 74 207 87 HOH HOH . C 3 HOH A 75 208 88 HOH HOH . C 3 HOH A 76 209 89 HOH HOH . C 3 HOH A 77 210 90 HOH HOH . C 3 HOH A 78 211 91 HOH HOH . C 3 HOH A 79 212 92 HOH HOH . C 3 HOH A 80 213 93 HOH HOH . C 3 HOH A 81 214 94 HOH HOH . C 3 HOH A 82 215 95 HOH HOH . C 3 HOH A 83 216 96 HOH HOH . C 3 HOH A 84 217 97 HOH HOH . C 3 HOH A 85 218 98 HOH HOH . C 3 HOH A 86 219 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA WDR . . . B 2 27.854 24.797 21.243 1 21.1 ? CAA WDR 1 A 1 HETATM 2 N NAB WDR . . . B 2 28.429 25.211 20.008 1 20.65 ? NAB WDR 1 A 1 HETATM 3 C CAC WDR . . . B 2 29.103 26.421 19.871 1 19.81 ? CAC WDR 1 A 1 HETATM 4 C CAD WDR . . . B 2 29.307 27.232 20.982 1 21.15 ? CAD WDR 1 A 1 HETATM 5 C CAE WDR . . . B 2 28.85 26.762 22.373 1 22.39 ? CAE WDR 1 A 1 HETATM 6 C CAF WDR . . . B 2 29.959 28.447 20.824 1 15.79 ? CAF WDR 1 A 1 HETATM 7 C CAG WDR . . . B 2 30.347 28.871 19.56 1 19.49 ? CAG WDR 1 A 1 HETATM 8 C CAH WDR . . . B 2 30.986 30.117 19.438 1 24.27 ? CAH WDR 1 A 1 HETATM 9 C CAI WDR . . . B 2 30.495 31.32 19.949 1 23.69 ? CAI WDR 1 A 1 HETATM 10 O OAJ WDR . . . B 2 31.408 32.319 19.656 1 28.24 ? OAJ WDR 1 A 1 HETATM 11 C CAK WDR . . . B 2 29.171 31.48 20.707 1 25.83 ? CAK WDR 1 A 1 HETATM 12 C CAL WDR . . . B 2 32.193 30.377 18.789 1 26.17 ? CAL WDR 1 A 1 HETATM 13 N NAM WDR . . . B 2 32.495 31.681 18.923 1 36.96 ? NAM WDR 1 A 1 HETATM 14 C CAN WDR . . . B 2 33.072 29.34 18.113 1 22.89 ? CAN WDR 1 A 1 HETATM 15 C CAO WDR . . . B 2 29.476 26.849 18.598 1 21.3 ? CAO WDR 1 A 1 HETATM 16 C CAP WDR . . . B 2 30.122 28.069 18.453 1 15.96 ? CAP WDR 1 A 1 HETATM 17 N NAQ WDR . . . B 2 28.04 25.529 22.404 1 27.72 ? NAQ WDR 1 A 1 HETATM 18 C CAR WDR . . . B 2 27.482 25.079 23.715 1 25.24 ? CAR WDR 1 A 1 HETATM 19 O OAS WDR . . . B 2 27.218 23.738 21.278 1 28.27 ? OAS WDR 1 A 1 HETATM 20 O OAT WDR . . . B 2 29.938 26.398 23.276 1 24.42 ? OAT WDR 1 A 1 HETATM 21 C CAU WDR . . . B 2 30.938 25.497 22.746 1 29.89 ? CAU WDR 1 A 1 HETATM 22 C CAV WDR . . . B 2 31.872 25.235 23.94 1 30.55 ? CAV WDR 1 A 1 HETATM 23 O OAW WDR . . . B 2 31.055 24.906 25.06 1 28.41 ? OAW WDR 1 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #