data_3SVJ # _model_server_result.job_id dhV0D7n8urN19fs6oeL9-A _model_server_result.datetime_utc '2024-11-22 08:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3svj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3SVJ # _exptl.entry_id 3SVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-methyl-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SVJ _cell.length_a 50.385 _cell.length_b 50.385 _cell.length_c 92.472 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 129 P GLY 129 1_555 A N OCS 130 P OCS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OCS 130 P OCS 130 1_555 A N LEU 131 P LEU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A NE2 HIS 173 P HIS 173 1_555 F NI NI . P NI 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A NE2 HIS 177 P HIS 177 1_555 F NI NI . P NI 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 F NI NI . P NI 208 1_555 H O HOH . P HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A SG OCS 130 P OCS 130 1_555 F NI NI . P NI 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? # _chem_comp.formula 'C27 H32 Cl N9 O2 S' _chem_comp.formula_weight 582.12 _chem_comp.id 4LI _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-methyl-1,3-thiazolidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SVJ _atom_sites.fract_transf_matrix[1][1] 0.019847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 P 1 204 1 SO4 SO4 . C 2 SO4 P 1 205 3 SO4 SO4 . D 2 SO4 P 1 206 4 SO4 SO4 . E 3 4LI P 1 207 204 4LI 4LI . F 4 NI P 1 208 1 NI NI . G 5 GOL P 1 209 1 GOL GOL . H 6 HOH P 1 210 3 HOH HOH . H 6 HOH P 2 211 4 HOH HOH . H 6 HOH P 3 212 5 HOH HOH . H 6 HOH P 4 213 6 HOH HOH . H 6 HOH P 5 214 7 HOH HOH . H 6 HOH P 6 215 8 HOH HOH . H 6 HOH P 7 216 9 HOH HOH . H 6 HOH P 8 217 10 HOH HOH . H 6 HOH P 9 218 11 HOH HOH . H 6 HOH P 10 219 13 HOH HOH . H 6 HOH P 11 220 14 HOH HOH . H 6 HOH P 12 221 15 HOH HOH . H 6 HOH P 13 222 16 HOH HOH . H 6 HOH P 14 223 17 HOH HOH . H 6 HOH P 15 224 18 HOH HOH . H 6 HOH P 16 225 19 HOH HOH . H 6 HOH P 17 226 20 HOH HOH . H 6 HOH P 18 227 21 HOH HOH . H 6 HOH P 19 228 22 HOH HOH . H 6 HOH P 20 229 23 HOH HOH . H 6 HOH P 21 230 24 HOH HOH . H 6 HOH P 22 231 25 HOH HOH . H 6 HOH P 23 232 26 HOH HOH . H 6 HOH P 24 233 27 HOH HOH . H 6 HOH P 25 234 28 HOH HOH . H 6 HOH P 26 235 30 HOH HOH . H 6 HOH P 27 236 31 HOH HOH . H 6 HOH P 28 237 32 HOH HOH . H 6 HOH P 29 238 33 HOH HOH . H 6 HOH P 30 239 34 HOH HOH . H 6 HOH P 31 240 35 HOH HOH . H 6 HOH P 32 241 36 HOH HOH . H 6 HOH P 33 242 37 HOH HOH . H 6 HOH P 34 243 38 HOH HOH . H 6 HOH P 35 244 39 HOH HOH . H 6 HOH P 36 245 40 HOH HOH . H 6 HOH P 37 246 41 HOH HOH . H 6 HOH P 38 247 42 HOH HOH . H 6 HOH P 39 248 43 HOH HOH . H 6 HOH P 40 249 44 HOH HOH . H 6 HOH P 41 250 45 HOH HOH . H 6 HOH P 42 251 46 HOH HOH . H 6 HOH P 43 252 47 HOH HOH . H 6 HOH P 44 253 48 HOH HOH . H 6 HOH P 45 254 49 HOH HOH . H 6 HOH P 46 255 50 HOH HOH . H 6 HOH P 47 256 51 HOH HOH . H 6 HOH P 48 257 53 HOH HOH . H 6 HOH P 49 258 54 HOH HOH . H 6 HOH P 50 259 55 HOH HOH . H 6 HOH P 51 260 56 HOH HOH . H 6 HOH P 52 261 57 HOH HOH . H 6 HOH P 53 262 58 HOH HOH . H 6 HOH P 54 263 59 HOH HOH . H 6 HOH P 55 264 60 HOH HOH . H 6 HOH P 56 265 61 HOH HOH . H 6 HOH P 57 266 62 HOH HOH . H 6 HOH P 58 267 63 HOH HOH . H 6 HOH P 59 268 64 HOH HOH . H 6 HOH P 60 269 66 HOH HOH . H 6 HOH P 61 270 67 HOH HOH . H 6 HOH P 62 271 68 HOH HOH . H 6 HOH P 63 272 69 HOH HOH . H 6 HOH P 64 273 70 HOH HOH . H 6 HOH P 65 274 71 HOH HOH . H 6 HOH P 66 275 72 HOH HOH . H 6 HOH P 67 276 73 HOH HOH . H 6 HOH P 68 277 74 HOH HOH . H 6 HOH P 69 278 75 HOH HOH . H 6 HOH P 70 279 76 HOH HOH . H 6 HOH P 71 280 77 HOH HOH . H 6 HOH P 72 281 78 HOH HOH . H 6 HOH P 73 282 79 HOH HOH . H 6 HOH P 74 283 80 HOH HOH . H 6 HOH P 75 284 81 HOH HOH . H 6 HOH P 76 285 82 HOH HOH . H 6 HOH P 77 286 83 HOH HOH . H 6 HOH P 78 287 84 HOH HOH . H 6 HOH P 79 288 85 HOH HOH . H 6 HOH P 80 289 86 HOH HOH . H 6 HOH P 81 290 87 HOH HOH . H 6 HOH P 82 291 88 HOH HOH . H 6 HOH P 83 292 89 HOH HOH . H 6 HOH P 84 293 90 HOH HOH . H 6 HOH P 85 294 91 HOH HOH . H 6 HOH P 86 295 92 HOH HOH . H 6 HOH P 87 296 93 HOH HOH . H 6 HOH P 88 297 94 HOH HOH . H 6 HOH P 89 298 95 HOH HOH . H 6 HOH P 90 299 96 HOH HOH . H 6 HOH P 91 300 97 HOH HOH . H 6 HOH P 92 301 98 HOH HOH . H 6 HOH P 93 302 99 HOH HOH . H 6 HOH P 94 303 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4LI . . . E 3 20.029 -8.681 0.158 1 47.72 ? C1 4LI 207 P 1 HETATM 2 C C2 4LI . . . E 3 19.269 -7.698 -0.431 1 46.87 ? C2 4LI 207 P 1 HETATM 3 C C3 4LI . . . E 3 21.321 -12.665 8.886 1 46.86 ? C3 4LI 207 P 1 HETATM 4 C C4 4LI . . . E 3 22.66 -12.869 8.658 1 46.72 ? C4 4LI 207 P 1 HETATM 5 C C5 4LI . . . E 3 20.874 -11.431 9.295 1 47.29 ? C5 4LI 207 P 1 HETATM 6 C C6 4LI . . . E 3 20.494 -8.524 1.444 1 39.99 ? C6 4LI 207 P 1 HETATM 7 C C7 4LI . . . E 3 18.976 -6.554 0.272 1 47.32 ? C7 4LI 207 P 1 HETATM 8 C C8 4LI . . . E 3 23.528 -11.821 8.851 1 43.39 ? C8 4LI 207 P 1 HETATM 9 C C9 4LI . . . E 3 21.755 -10.391 9.483 1 45.62 ? C9 4LI 207 P 1 HETATM 10 C C10 4LI . . . E 3 20.206 -7.383 2.154 1 42.25 ? C10 4LI 207 P 1 HETATM 11 C C11 4LI . . . E 3 23.099 -10.579 9.26 1 42.28 ? C11 4LI 207 P 1 HETATM 12 C C12 4LI . . . E 3 19.445 -6.405 1.555 1 44.7 ? C12 4LI 207 P 1 HETATM 13 C C13 4LI . . . E 3 23.36 -7.564 6.555 1 35.6 ? C13 4LI 207 P 1 HETATM 14 C C14 4LI . . . E 3 25.034 -6.59 7.753 1 35.05 ? C14 4LI 207 P 1 HETATM 15 C C15 4LI . . . E 3 24.068 -8.507 8.487 1 36.48 ? C15 4LI 207 P 1 HETATM 16 C C16 4LI . . . E 3 24.947 -12.058 8.598 1 44.62 ? C16 4LI 207 P 1 HETATM 17 C C17 4LI . . . E 3 26.006 -4.566 5.734 1 34.86 ? C17 4LI 207 P 1 HETATM 18 C C18 4LI . . . E 3 20.804 -8.496 4.117 1 38.03 ? C18 4LI 207 P 1 HETATM 19 C C19 4LI . . . E 3 21.896 -6.425 3.416 1 34.44 ? C19 4LI 207 P 1 HETATM 20 C C20 4LI . . . E 3 21.292 -8.264 5.533 1 35.82 ? C20 4LI 207 P 1 HETATM 21 C C21 4LI . . . E 3 22.459 -6.239 4.806 1 32.88 ? C21 4LI 207 P 1 HETATM 22 C C22 4LI . . . E 3 26.306 -3.201 7.774 1 32.84 ? C22 4LI 207 P 1 HETATM 23 C C23 4LI . . . E 3 26.2 -5.314 9.323 1 41.29 ? C23 4LI 207 P 1 HETATM 24 C C24 4LI . . . E 3 25.585 -4.385 7.167 1 35.18 ? C24 4LI 207 P 1 HETATM 25 C C25 4LI . . . E 3 21.25 -9.065 9.929 1 46.98 ? C25 4LI 207 P 1 HETATM 26 C C26 4LI . . . E 3 26.99 -12.967 9.54 1 48.68 ? C26 4LI 207 P 1 HETATM 27 C C27 4LI . . . E 3 27.366 -5.88 4.228 1 39.77 ? C27 4LI 207 P 1 HETATM 28 N N28 4LI . . . E 3 24.242 -6.57 6.682 1 34.95 ? N28 4LI 207 P 1 HETATM 29 N N29 4LI . . . E 3 23.243 -8.561 7.437 1 37.98 ? N29 4LI 207 P 1 HETATM 30 N N30 4LI . . . E 3 24.974 -7.546 8.682 1 36.61 ? N30 4LI 207 P 1 HETATM 31 N N31 4LI . . . E 3 20.673 -7.205 3.468 1 34.66 ? N31 4LI 207 P 1 HETATM 32 N N32 4LI . . . E 3 22.541 -7.547 5.415 1 35.36 ? N32 4LI 207 P 1 HETATM 33 N N33 4LI . . . E 3 25.984 -5.565 7.916 1 37.18 ? N33 4LI 207 P 1 HETATM 34 N N34 4LI . . . E 3 23.99 -9.52 9.451 1 38.95 ? N34 4LI 207 P 1 HETATM 35 N N35 4LI . . . E 3 25.609 -12.591 9.665 1 46.87 ? N35 4LI 207 P 1 HETATM 36 N N36 4LI . . . E 3 26.906 -5.585 5.559 1 35.6 ? N36 4LI 207 P 1 HETATM 37 O O37 4LI . . . E 3 25.425 -11.792 7.505 1 51.29 ? O37 4LI 207 P 1 HETATM 38 O O38 4LI . . . E 3 25.572 -3.878 4.822 1 35.48 ? O38 4LI 207 P 1 HETATM 39 S S39 4LI . . . E 3 26.37 -3.531 9.55 1 36.68 ? S39 4LI 207 P 1 HETATM 40 CL CL40 4LI . . . E 3 19.075 -4.971 2.431 1 62.84 ? CL40 4LI 207 P 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #