data_3SVL
#
_model_server_result.job_id            iAOiAy4A0LxaEcJoC-SC2w 
_model_server_result.datetime_utc      '2024-12-26 12:12:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3svl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":200}' 
#
_entry.id    3SVL 
#
_exptl.entry_id    3SVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SVL 
_cell.length_a            107.255 
_cell.length_b            107.255 
_cell.length_c            128.251 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1,2 
A,B,C,D,E,F,G 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 160.8825 92.885555 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 50 A ASP 50 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 A OD2 ASP 52 A ASP 52 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc3 D CA CA . A CA 201 1_555 F O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 D CA CA . A CA 201 1_555 F O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc5 D CA CA . A CA 201 1_555 B O LEU 14 B LEU 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc6 D CA CA . A CA 201 1_555 G O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     3SVL 
_atom_sites.fract_transf_matrix[1][1]    0.009324 
_atom_sites.fract_transf_matrix[1][2]    0.005383 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 200 200 FMN FMN . 
D 3 CA A 1 201 201 CA CA . 
E 2 FMN B 1 200 200 FMN FMN . 
F 4 HOH A 1 202 202 HOH TIP . 
F 4 HOH A 2 204 204 HOH TIP . 
F 4 HOH A 3 207 207 HOH TIP . 
F 4 HOH A 4 212 212 HOH TIP . 
F 4 HOH A 5 216 216 HOH TIP . 
F 4 HOH A 6 217 217 HOH TIP . 
F 4 HOH A 7 221 221 HOH TIP . 
F 4 HOH A 8 222 222 HOH TIP . 
F 4 HOH A 9 223 223 HOH TIP . 
F 4 HOH A 10 224 224 HOH TIP . 
F 4 HOH A 11 225 225 HOH TIP . 
F 4 HOH A 12 226 226 HOH TIP . 
F 4 HOH A 13 227 227 HOH TIP . 
F 4 HOH A 14 229 229 HOH TIP . 
F 4 HOH A 15 231 231 HOH TIP . 
F 4 HOH A 16 232 232 HOH TIP . 
F 4 HOH A 17 234 234 HOH TIP . 
F 4 HOH A 18 235 235 HOH TIP . 
F 4 HOH A 19 239 239 HOH TIP . 
F 4 HOH A 20 240 240 HOH TIP . 
F 4 HOH A 21 243 243 HOH TIP . 
F 4 HOH A 22 244 244 HOH TIP . 
F 4 HOH A 23 245 245 HOH TIP . 
F 4 HOH A 24 246 246 HOH TIP . 
F 4 HOH A 25 247 247 HOH TIP . 
F 4 HOH A 26 249 249 HOH TIP . 
F 4 HOH A 27 250 250 HOH TIP . 
F 4 HOH A 28 252 252 HOH TIP . 
F 4 HOH A 29 254 254 HOH TIP . 
F 4 HOH A 30 259 259 HOH TIP . 
F 4 HOH A 31 262 262 HOH TIP . 
F 4 HOH A 32 266 266 HOH TIP . 
F 4 HOH A 33 272 272 HOH TIP . 
F 4 HOH A 34 277 277 HOH TIP . 
F 4 HOH A 35 281 281 HOH TIP . 
F 4 HOH A 36 282 282 HOH TIP . 
F 4 HOH A 37 284 284 HOH TIP . 
F 4 HOH A 38 285 285 HOH TIP . 
F 4 HOH A 39 286 286 HOH TIP . 
F 4 HOH A 40 287 287 HOH TIP . 
F 4 HOH A 41 288 288 HOH TIP . 
G 4 HOH B 1 203 203 HOH TIP . 
G 4 HOH B 2 205 205 HOH TIP . 
G 4 HOH B 3 206 206 HOH TIP . 
G 4 HOH B 4 208 208 HOH TIP . 
G 4 HOH B 5 209 209 HOH TIP . 
G 4 HOH B 6 210 210 HOH TIP . 
G 4 HOH B 7 211 211 HOH TIP . 
G 4 HOH B 8 213 213 HOH TIP . 
G 4 HOH B 9 214 214 HOH TIP . 
G 4 HOH B 10 215 215 HOH TIP . 
G 4 HOH B 11 218 218 HOH TIP . 
G 4 HOH B 12 219 219 HOH TIP . 
G 4 HOH B 13 220 220 HOH TIP . 
G 4 HOH B 14 228 228 HOH TIP . 
G 4 HOH B 15 230 230 HOH TIP . 
G 4 HOH B 16 233 233 HOH TIP . 
G 4 HOH B 17 236 236 HOH TIP . 
G 4 HOH B 18 237 237 HOH TIP . 
G 4 HOH B 19 238 238 HOH TIP . 
G 4 HOH B 20 241 241 HOH TIP . 
G 4 HOH B 21 242 242 HOH TIP . 
G 4 HOH B 22 248 248 HOH TIP . 
G 4 HOH B 23 251 251 HOH TIP . 
G 4 HOH B 24 253 253 HOH TIP . 
G 4 HOH B 25 255 255 HOH TIP . 
G 4 HOH B 26 256 256 HOH TIP . 
G 4 HOH B 27 257 257 HOH TIP . 
G 4 HOH B 28 258 258 HOH TIP . 
G 4 HOH B 29 260 260 HOH TIP . 
G 4 HOH B 30 261 261 HOH TIP . 
G 4 HOH B 31 263 263 HOH TIP . 
G 4 HOH B 32 264 264 HOH TIP . 
G 4 HOH B 33 265 265 HOH TIP . 
G 4 HOH B 34 267 267 HOH TIP . 
G 4 HOH B 35 268 268 HOH TIP . 
G 4 HOH B 36 269 269 HOH TIP . 
G 4 HOH B 37 270 270 HOH TIP . 
G 4 HOH B 38 271 271 HOH TIP . 
G 4 HOH B 39 273 273 HOH TIP . 
G 4 HOH B 40 274 274 HOH TIP . 
G 4 HOH B 41 275 275 HOH TIP . 
G 4 HOH B 42 276 276 HOH TIP . 
G 4 HOH B 43 278 278 HOH TIP . 
G 4 HOH B 44 279 279 HOH TIP . 
G 4 HOH B 45 280 280 HOH TIP . 
G 4 HOH B 46 283 283 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 2 67.085 43.901 11.132 1 13.28 ? N1 FMN 200 B 1 
HETATM 2 C C2 FMN . . . E 2 67.55 43.857 9.867 1 13.31 ? C2 FMN 200 B 1 
HETATM 3 O O2 FMN . . . E 2 67.229 42.907 9.165 1 14.85 ? O2 FMN 200 B 1 
HETATM 4 N N3 FMN . . . E 2 68.365 44.842 9.345 1 14.44 ? N3 FMN 200 B 1 
HETATM 5 C C4 FMN . . . E 2 68.769 45.949 10.091 1 12.88 ? C4 FMN 200 B 1 
HETATM 6 O O4 FMN . . . E 2 69.481 46.8 9.606 1 10.94 ? O4 FMN 200 B 1 
HETATM 7 C C4A FMN . . . E 2 68.287 46.052 11.52 1 13.2 ? C4A FMN 200 B 1 
HETATM 8 N N5 FMN . . . E 2 68.632 47.103 12.416 1 14.81 ? N5 FMN 200 B 1 
HETATM 9 C C5A FMN . . . E 2 68.515 46.928 13.73 1 13.48 ? C5A FMN 200 B 1 
HETATM 10 C C6 FMN . . . E 2 69.386 47.701 14.604 1 15.53 ? C6 FMN 200 B 1 
HETATM 11 C C7 FMN . . . E 2 69.429 47.43 15.995 1 14.59 ? C7 FMN 200 B 1 
HETATM 12 C C7M FMN . . . E 2 70.37 48.264 16.839 1 15.25 ? C7M FMN 200 B 1 
HETATM 13 C C8 FMN . . . E 2 68.578 46.365 16.572 1 14.46 ? C8 FMN 200 B 1 
HETATM 14 C C8M FMN . . . E 2 68.635 45.972 18.039 1 13.79 ? C8M FMN 200 B 1 
HETATM 15 C C9 FMN . . . E 2 67.746 45.603 15.732 1 13.6 ? C9 FMN 200 B 1 
HETATM 16 C C9A FMN . . . E 2 67.668 45.858 14.318 1 13.44 ? C9A FMN 200 B 1 
HETATM 17 N N10 FMN . . . E 2 66.907 44.932 13.313 1 13.3 ? N10 FMN 200 B 1 
HETATM 18 C C10 FMN . . . E 2 67.39 44.906 11.993 1 12.66 ? C10 FMN 200 B 1 
HETATM 19 C C1' FMN . . . E 2 65.893 43.947 13.759 1 10.85 ? C1' FMN 200 B 1 
HETATM 20 C C2' FMN . . . E 2 66.592 42.643 14.157 1 12.65 ? C2' FMN 200 B 1 
HETATM 21 O O2' FMN . . . E 2 66.704 41.797 13.018 1 13.87 ? O2' FMN 200 B 1 
HETATM 22 C C3' FMN . . . E 2 65.793 41.959 15.3 1 13.08 ? C3' FMN 200 B 1 
HETATM 23 O O3' FMN . . . E 2 65.697 42.84 16.444 1 16.62 ? O3' FMN 200 B 1 
HETATM 24 C C4' FMN . . . E 2 66.448 40.611 15.738 1 12 ? C4' FMN 200 B 1 
HETATM 25 O O4' FMN . . . E 2 65.403 39.727 16.131 1 12.97 ? O4' FMN 200 B 1 
HETATM 26 C C5' FMN . . . E 2 67.743 40.824 16.549 1 10.67 ? C5' FMN 200 B 1 
HETATM 27 O O5' FMN . . . E 2 68.584 39.656 16.52 1 11.01 ? O5' FMN 200 B 1 
HETATM 28 P P FMN . . . E 2 68.333 38.742 17.867 1 10.32 ? P FMN 200 B 1 
HETATM 29 O O1P FMN . . . E 2 66.936 38.239 17.908 1 8 ? O1P FMN 200 B 1 
HETATM 30 O O2P FMN . . . E 2 69.308 37.478 17.843 1 7.44 ? O2P FMN 200 B 1 
HETATM 31 O O3P FMN . . . E 2 68.605 39.628 19.174 1 8.71 ? O3P FMN 200 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           118 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           451 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#