data_3SVL
#
_model_server_result.job_id            tIj6em9dIgsgYkWf0LqB8A 
_model_server_result.datetime_utc      '2024-12-26 11:49:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3svl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
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_entry.id    3SVL 
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_exptl.entry_id    3SVL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SVL 
_cell.length_a            107.255 
_cell.length_b            107.255 
_cell.length_c            128.251 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3SVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1,2 
A,B,C,D,E,F,G 2 1 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 160.8825 92.885555 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 50 A ASP 50 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 A OD2 ASP 52 A ASP 52 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc3 D CA CA . A CA 201 1_555 F O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 D CA CA . A CA 201 1_555 F O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc5 D CA CA . A CA 201 1_555 B O LEU 14 B LEU 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc6 D CA CA . A CA 201 1_555 G O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     3SVL 
_atom_sites.fract_transf_matrix[1][1]    0.009324 
_atom_sites.fract_transf_matrix[1][2]    0.005383 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 200 200 FMN FMN . 
D 3 CA A 1 201 201 CA CA . 
E 2 FMN B 1 200 200 FMN FMN . 
F 4 HOH A 1 202 202 HOH TIP . 
F 4 HOH A 2 204 204 HOH TIP . 
F 4 HOH A 3 207 207 HOH TIP . 
F 4 HOH A 4 212 212 HOH TIP . 
F 4 HOH A 5 216 216 HOH TIP . 
F 4 HOH A 6 217 217 HOH TIP . 
F 4 HOH A 7 221 221 HOH TIP . 
F 4 HOH A 8 222 222 HOH TIP . 
F 4 HOH A 9 223 223 HOH TIP . 
F 4 HOH A 10 224 224 HOH TIP . 
F 4 HOH A 11 225 225 HOH TIP . 
F 4 HOH A 12 226 226 HOH TIP . 
F 4 HOH A 13 227 227 HOH TIP . 
F 4 HOH A 14 229 229 HOH TIP . 
F 4 HOH A 15 231 231 HOH TIP . 
F 4 HOH A 16 232 232 HOH TIP . 
F 4 HOH A 17 234 234 HOH TIP . 
F 4 HOH A 18 235 235 HOH TIP . 
F 4 HOH A 19 239 239 HOH TIP . 
F 4 HOH A 20 240 240 HOH TIP . 
F 4 HOH A 21 243 243 HOH TIP . 
F 4 HOH A 22 244 244 HOH TIP . 
F 4 HOH A 23 245 245 HOH TIP . 
F 4 HOH A 24 246 246 HOH TIP . 
F 4 HOH A 25 247 247 HOH TIP . 
F 4 HOH A 26 249 249 HOH TIP . 
F 4 HOH A 27 250 250 HOH TIP . 
F 4 HOH A 28 252 252 HOH TIP . 
F 4 HOH A 29 254 254 HOH TIP . 
F 4 HOH A 30 259 259 HOH TIP . 
F 4 HOH A 31 262 262 HOH TIP . 
F 4 HOH A 32 266 266 HOH TIP . 
F 4 HOH A 33 272 272 HOH TIP . 
F 4 HOH A 34 277 277 HOH TIP . 
F 4 HOH A 35 281 281 HOH TIP . 
F 4 HOH A 36 282 282 HOH TIP . 
F 4 HOH A 37 284 284 HOH TIP . 
F 4 HOH A 38 285 285 HOH TIP . 
F 4 HOH A 39 286 286 HOH TIP . 
F 4 HOH A 40 287 287 HOH TIP . 
F 4 HOH A 41 288 288 HOH TIP . 
G 4 HOH B 1 203 203 HOH TIP . 
G 4 HOH B 2 205 205 HOH TIP . 
G 4 HOH B 3 206 206 HOH TIP . 
G 4 HOH B 4 208 208 HOH TIP . 
G 4 HOH B 5 209 209 HOH TIP . 
G 4 HOH B 6 210 210 HOH TIP . 
G 4 HOH B 7 211 211 HOH TIP . 
G 4 HOH B 8 213 213 HOH TIP . 
G 4 HOH B 9 214 214 HOH TIP . 
G 4 HOH B 10 215 215 HOH TIP . 
G 4 HOH B 11 218 218 HOH TIP . 
G 4 HOH B 12 219 219 HOH TIP . 
G 4 HOH B 13 220 220 HOH TIP . 
G 4 HOH B 14 228 228 HOH TIP . 
G 4 HOH B 15 230 230 HOH TIP . 
G 4 HOH B 16 233 233 HOH TIP . 
G 4 HOH B 17 236 236 HOH TIP . 
G 4 HOH B 18 237 237 HOH TIP . 
G 4 HOH B 19 238 238 HOH TIP . 
G 4 HOH B 20 241 241 HOH TIP . 
G 4 HOH B 21 242 242 HOH TIP . 
G 4 HOH B 22 248 248 HOH TIP . 
G 4 HOH B 23 251 251 HOH TIP . 
G 4 HOH B 24 253 253 HOH TIP . 
G 4 HOH B 25 255 255 HOH TIP . 
G 4 HOH B 26 256 256 HOH TIP . 
G 4 HOH B 27 257 257 HOH TIP . 
G 4 HOH B 28 258 258 HOH TIP . 
G 4 HOH B 29 260 260 HOH TIP . 
G 4 HOH B 30 261 261 HOH TIP . 
G 4 HOH B 31 263 263 HOH TIP . 
G 4 HOH B 32 264 264 HOH TIP . 
G 4 HOH B 33 265 265 HOH TIP . 
G 4 HOH B 34 267 267 HOH TIP . 
G 4 HOH B 35 268 268 HOH TIP . 
G 4 HOH B 36 269 269 HOH TIP . 
G 4 HOH B 37 270 270 HOH TIP . 
G 4 HOH B 38 271 271 HOH TIP . 
G 4 HOH B 39 273 273 HOH TIP . 
G 4 HOH B 40 274 274 HOH TIP . 
G 4 HOH B 41 275 275 HOH TIP . 
G 4 HOH B 42 276 276 HOH TIP . 
G 4 HOH B 43 278 278 HOH TIP . 
G 4 HOH B 44 279 279 HOH TIP . 
G 4 HOH B 45 280 280 HOH TIP . 
G 4 HOH B 46 283 283 HOH TIP . 
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_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               71.415 
_atom_site.Cartn_y               40.458 
_atom_site.Cartn_z               27.887 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#