data_3SW9
#
_model_server_result.job_id            LfH4LHmbAFp0uwBhju3Inw 
_model_server_result.datetime_utc      '2024-11-29 22:05:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sw9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":5}' 
#
_entry.id    3SW9 
#
_exptl.entry_id    3SW9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SW9 
_cell.length_a            80.14 
_cell.length_b            91.14 
_cell.length_c            95.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SW9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O 1 1 
C,D,J,K,L,M,N,P,Q 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 81 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 94 A CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 124 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 128 A CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc5 F ZN ZN . A ZN 2 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc6 F ZN ZN . A ZN 2 1_555 A SG CYS 124 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc7 F ZN ZN . A ZN 2 1_555 A SG CYS 130 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc8 F ZN ZN . A ZN 2 1_555 A SG CYS 134 A CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc9 G ZN ZN . A ZN 3 1_555 A SG CYS 81 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc10 G ZN ZN . A ZN 3 1_555 A SG CYS 83 A CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc11 G ZN ZN . A ZN 3 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc12 G ZN ZN . A ZN 3 1_555 A SG CYS 92 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc13 H ZN ZN . A ZN 4 1_555 A SG CYS 222 A CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc14 H ZN ZN . A ZN 4 1_555 A SG CYS 275 A CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc15 H ZN ZN . A ZN 4 1_555 A SG CYS 277 A CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc16 H ZN ZN . A ZN 4 1_555 A SG CYS 282 A CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc17 J ZN ZN . B ZN 5 1_555 C SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc18 J ZN ZN . B ZN 5 1_555 C SG CYS 94 B CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc19 J ZN ZN . B ZN 5 1_555 C SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc20 J ZN ZN . B ZN 5 1_555 C SG CYS 128 B CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc21 K ZN ZN . B ZN 6 1_555 C SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc22 K ZN ZN . B ZN 6 1_555 C SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc23 K ZN ZN . B ZN 6 1_555 C SG CYS 130 B CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc24 K ZN ZN . B ZN 6 1_555 C SG CYS 134 B CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc25 L ZN ZN . B ZN 7 1_555 C SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc26 L ZN ZN . B ZN 7 1_555 C SG CYS 83 B CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc27 L ZN ZN . B ZN 7 1_555 C SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc28 L ZN ZN . B ZN 7 1_555 C SG CYS 92 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc29 M ZN ZN . B ZN 8 1_555 C SG CYS 222 B CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc30 M ZN ZN . B ZN 8 1_555 C SG CYS 275 B CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc31 M ZN ZN . B ZN 8 1_555 C SG CYS 277 B CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc32 M ZN ZN . B ZN 8 1_555 C SG CYS 282 B CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3SW9 
_atom_sites.fract_transf_matrix[1][1]    0.012478 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 1 1 ZN ZN . 
F 3 ZN A 1 2 2 ZN ZN . 
G 3 ZN A 1 3 3 ZN ZN . 
H 3 ZN A 1 4 4 ZN ZN . 
I 4 SFG A 1 101 101 SFG SFG . 
J 3 ZN B 1 5 5 ZN ZN . 
K 3 ZN B 1 6 6 ZN ZN . 
L 3 ZN B 1 7 7 ZN ZN . 
M 3 ZN B 1 8 8 ZN ZN . 
N 4 SFG B 1 102 102 SFG SFG . 
O 5 HOH A 1 206 206 HOH HOH . 
O 5 HOH A 2 210 210 HOH HOH . 
O 5 HOH A 3 211 211 HOH HOH . 
O 5 HOH A 4 212 212 HOH HOH . 
O 5 HOH A 5 219 219 HOH HOH . 
O 5 HOH A 6 220 220 HOH HOH . 
O 5 HOH A 7 221 221 HOH HOH . 
O 5 HOH A 8 222 222 HOH HOH . 
P 5 HOH B 1 201 201 HOH HOH . 
P 5 HOH B 2 202 202 HOH HOH . 
P 5 HOH B 3 203 203 HOH HOH . 
P 5 HOH B 4 204 204 HOH HOH . 
P 5 HOH B 5 205 205 HOH HOH . 
P 5 HOH B 6 207 207 HOH HOH . 
P 5 HOH B 7 208 208 HOH HOH . 
P 5 HOH B 8 209 209 HOH HOH . 
P 5 HOH B 9 213 213 HOH HOH . 
P 5 HOH B 10 214 214 HOH HOH . 
P 5 HOH B 11 215 215 HOH HOH . 
P 5 HOH B 12 217 217 HOH HOH . 
P 5 HOH B 13 218 218 HOH HOH . 
P 5 HOH B 14 223 223 HOH HOH . 
Q 5 HOH Q 1 216 216 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               11.187 
_atom_site.Cartn_y               -7.038 
_atom_site.Cartn_z               16.5 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           5 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#