data_3SWC # _model_server_result.job_id IUyrxYTIDw4IgfYjEsOIug _model_server_result.datetime_utc '2024-11-22 11:39:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3swc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":307}' # _entry.id 3SWC # _exptl.entry_id 3SWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SWC _cell.length_a 80.09 _cell.length_b 90.22 _cell.length_c 95.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 5 P ARG 43 1_555 B N MLY 6 P MLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C MLY 6 P MLY 44 1_555 B N VAL 7 P VAL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 D C ARG 5 Q ARG 43 1_555 D N MLY 6 Q MLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 D C MLY 6 Q MLY 44 1_555 D N VAL 7 Q VAL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 E ZN ZN . A ZN 301 1_555 A SG CYS 81 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 E ZN ZN . A ZN 301 1_555 A SG CYS 94 A CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc3 E ZN ZN . A ZN 301 1_555 A SG CYS 124 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc4 E ZN ZN . A ZN 301 1_555 A SG CYS 128 A CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 F ZN ZN . A ZN 302 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 F ZN ZN . A ZN 302 1_555 A SG CYS 124 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc7 F ZN ZN . A ZN 302 1_555 A SG CYS 130 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 F ZN ZN . A ZN 302 1_555 A SG CYS 134 A CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc9 G ZN ZN . A ZN 303 1_555 A SG CYS 81 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 G ZN ZN . A ZN 303 1_555 A SG CYS 83 A CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc11 G ZN ZN . A ZN 303 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 G ZN ZN . A ZN 303 1_555 A SG CYS 92 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc13 H ZN ZN . A ZN 304 1_555 A SG CYS 222 A CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc14 H ZN ZN . A ZN 304 1_555 A SG CYS 275 A CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 H ZN ZN . A ZN 304 1_555 A SG CYS 277 A CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc16 H ZN ZN . A ZN 304 1_555 A SG CYS 282 A CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc17 J ZN ZN . B ZN 305 1_555 C SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc18 J ZN ZN . B ZN 305 1_555 C SG CYS 94 B CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc19 J ZN ZN . B ZN 305 1_555 C SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc20 J ZN ZN . B ZN 305 1_555 C SG CYS 128 B CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 K ZN ZN . B ZN 306 1_555 C SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc22 K ZN ZN . B ZN 306 1_555 C SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc23 K ZN ZN . B ZN 306 1_555 C SG CYS 130 B CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc24 K ZN ZN . B ZN 306 1_555 C SG CYS 134 B CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc25 L ZN ZN . B ZN 307 1_555 C SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc26 L ZN ZN . B ZN 307 1_555 C SG CYS 83 B CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc27 L ZN ZN . B ZN 307 1_555 C SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc28 L ZN ZN . B ZN 307 1_555 C SG CYS 92 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 M ZN ZN . B ZN 308 1_555 C SG CYS 222 B CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc30 M ZN ZN . B ZN 308 1_555 C SG CYS 275 B CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc31 M ZN ZN . B ZN 308 1_555 C SG CYS 277 B CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc32 M ZN ZN . B ZN 308 1_555 C SG CYS 282 B CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SWC _atom_sites.fract_transf_matrix[1][1] 0.012486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 301 301 ZN ZN . F 3 ZN A 1 302 302 ZN ZN . G 3 ZN A 1 303 303 ZN ZN . H 3 ZN A 1 304 304 ZN ZN . I 4 SAH A 1 202 202 SAH SAH . J 3 ZN B 1 305 305 ZN ZN . K 3 ZN B 1 306 306 ZN ZN . L 3 ZN B 1 307 307 ZN ZN . M 3 ZN B 1 308 308 ZN ZN . N 4 SAH B 1 201 201 SAH SAH . O 5 HOH A 1 1 1 HOH HOH . O 5 HOH A 2 2 2 HOH HOH . O 5 HOH A 3 3 3 HOH HOH . O 5 HOH A 4 4 4 HOH HOH . O 5 HOH A 5 5 5 HOH HOH . O 5 HOH A 6 6 6 HOH HOH . O 5 HOH A 7 7 7 HOH HOH . O 5 HOH A 8 9 9 HOH HOH . O 5 HOH A 9 10 10 HOH HOH . O 5 HOH A 10 11 11 HOH HOH . O 5 HOH A 11 12 12 HOH HOH . O 5 HOH A 12 13 13 HOH HOH . O 5 HOH A 13 14 14 HOH HOH . O 5 HOH A 14 15 15 HOH HOH . O 5 HOH A 15 16 16 HOH HOH . O 5 HOH A 16 17 17 HOH HOH . O 5 HOH A 17 18 18 HOH HOH . O 5 HOH A 18 23 23 HOH HOH . O 5 HOH A 19 24 24 HOH HOH . O 5 HOH A 20 25 25 HOH HOH . O 5 HOH A 21 26 26 HOH HOH . O 5 HOH A 22 27 27 HOH HOH . O 5 HOH A 23 28 28 HOH HOH . O 5 HOH A 24 29 29 HOH HOH . O 5 HOH A 25 32 32 HOH HOH . O 5 HOH A 26 33 33 HOH HOH . O 5 HOH A 27 34 34 HOH HOH . O 5 HOH A 28 35 35 HOH HOH . O 5 HOH A 29 48 48 HOH HOH . O 5 HOH A 30 63 63 HOH HOH . O 5 HOH A 31 65 65 HOH HOH . O 5 HOH A 32 66 66 HOH HOH . O 5 HOH A 33 72 72 HOH HOH . O 5 HOH A 34 86 86 HOH HOH . O 5 HOH A 35 88 88 HOH HOH . O 5 HOH A 36 96 96 HOH HOH . O 5 HOH A 37 97 97 HOH HOH . O 5 HOH A 38 98 98 HOH HOH . O 5 HOH A 39 100 100 HOH HOH . O 5 HOH A 40 101 101 HOH HOH . O 5 HOH A 41 102 102 HOH HOH . O 5 HOH A 42 103 103 HOH HOH . O 5 HOH A 43 104 104 HOH HOH . O 5 HOH A 44 105 105 HOH HOH . O 5 HOH A 45 107 107 HOH HOH . O 5 HOH A 46 108 108 HOH HOH . O 5 HOH A 47 109 109 HOH HOH . O 5 HOH A 48 111 111 HOH HOH . O 5 HOH A 49 112 112 HOH HOH . O 5 HOH A 50 113 113 HOH HOH . O 5 HOH A 51 114 114 HOH HOH . O 5 HOH A 52 115 115 HOH HOH . O 5 HOH A 53 116 116 HOH HOH . O 5 HOH A 54 117 117 HOH HOH . O 5 HOH A 55 118 118 HOH HOH . O 5 HOH A 56 119 119 HOH HOH . O 5 HOH A 57 120 120 HOH HOH . O 5 HOH A 58 121 121 HOH HOH . O 5 HOH A 59 135 135 HOH HOH . O 5 HOH A 60 136 136 HOH HOH . O 5 HOH A 61 137 137 HOH HOH . O 5 HOH A 62 144 144 HOH HOH . O 5 HOH A 63 145 145 HOH HOH . O 5 HOH A 64 146 146 HOH HOH . O 5 HOH A 65 147 147 HOH HOH . O 5 HOH A 66 148 148 HOH HOH . O 5 HOH A 67 149 149 HOH HOH . O 5 HOH A 68 150 150 HOH HOH . O 5 HOH A 69 152 152 HOH HOH . O 5 HOH A 70 158 158 HOH HOH . O 5 HOH A 71 160 160 HOH HOH . O 5 HOH A 72 161 161 HOH HOH . O 5 HOH A 73 162 162 HOH HOH . O 5 HOH A 74 163 163 HOH HOH . O 5 HOH A 75 164 164 HOH HOH . O 5 HOH A 76 165 165 HOH HOH . O 5 HOH A 77 166 166 HOH HOH . O 5 HOH A 78 167 167 HOH HOH . P 5 HOH P 1 99 99 HOH HOH . P 5 HOH P 2 138 138 HOH HOH . Q 5 HOH B 1 8 8 HOH HOH . Q 5 HOH B 2 19 19 HOH HOH . Q 5 HOH B 3 20 20 HOH HOH . Q 5 HOH B 4 21 21 HOH HOH . Q 5 HOH B 5 22 22 HOH HOH . Q 5 HOH B 6 30 30 HOH HOH . Q 5 HOH B 7 31 31 HOH HOH . Q 5 HOH B 8 36 36 HOH HOH . Q 5 HOH B 9 37 37 HOH HOH . Q 5 HOH B 10 38 38 HOH HOH . Q 5 HOH B 11 40 40 HOH HOH . Q 5 HOH B 12 42 42 HOH HOH . Q 5 HOH B 13 43 43 HOH HOH . Q 5 HOH B 14 44 44 HOH HOH . Q 5 HOH B 15 45 45 HOH HOH . Q 5 HOH B 16 46 46 HOH HOH . Q 5 HOH B 17 47 47 HOH HOH . Q 5 HOH B 18 49 49 HOH HOH . Q 5 HOH B 19 50 50 HOH HOH . Q 5 HOH B 20 51 51 HOH HOH . Q 5 HOH B 21 52 52 HOH HOH . Q 5 HOH B 22 53 53 HOH HOH . Q 5 HOH B 23 54 54 HOH HOH . Q 5 HOH B 24 55 55 HOH HOH . Q 5 HOH B 25 56 56 HOH HOH . Q 5 HOH B 26 57 57 HOH HOH . Q 5 HOH B 27 58 58 HOH HOH . Q 5 HOH B 28 59 59 HOH HOH . Q 5 HOH B 29 60 60 HOH HOH . Q 5 HOH B 30 61 61 HOH HOH . Q 5 HOH B 31 62 62 HOH HOH . Q 5 HOH B 32 64 64 HOH HOH . Q 5 HOH B 33 67 67 HOH HOH . Q 5 HOH B 34 68 68 HOH HOH . Q 5 HOH B 35 69 69 HOH HOH . Q 5 HOH B 36 70 70 HOH HOH . Q 5 HOH B 37 71 71 HOH HOH . Q 5 HOH B 38 73 73 HOH HOH . Q 5 HOH B 39 74 74 HOH HOH . Q 5 HOH B 40 75 75 HOH HOH . Q 5 HOH B 41 76 76 HOH HOH . Q 5 HOH B 42 77 77 HOH HOH . Q 5 HOH B 43 78 78 HOH HOH . Q 5 HOH B 44 79 79 HOH HOH . Q 5 HOH B 45 80 80 HOH HOH . Q 5 HOH B 46 81 81 HOH HOH . Q 5 HOH B 47 82 82 HOH HOH . Q 5 HOH B 48 83 83 HOH HOH . Q 5 HOH B 49 84 84 HOH HOH . Q 5 HOH B 50 85 85 HOH HOH . Q 5 HOH B 51 87 87 HOH HOH . Q 5 HOH B 52 89 89 HOH HOH . Q 5 HOH B 53 90 90 HOH HOH . Q 5 HOH B 54 91 91 HOH HOH . Q 5 HOH B 55 92 92 HOH HOH . Q 5 HOH B 56 93 93 HOH HOH . Q 5 HOH B 57 94 94 HOH HOH . Q 5 HOH B 58 95 95 HOH HOH . Q 5 HOH B 59 106 106 HOH HOH . Q 5 HOH B 60 110 110 HOH HOH . Q 5 HOH B 61 122 122 HOH HOH . Q 5 HOH B 62 123 123 HOH HOH . Q 5 HOH B 63 124 124 HOH HOH . Q 5 HOH B 64 125 125 HOH HOH . Q 5 HOH B 65 126 126 HOH HOH . Q 5 HOH B 66 127 127 HOH HOH . Q 5 HOH B 67 128 128 HOH HOH . Q 5 HOH B 68 129 129 HOH HOH . Q 5 HOH B 69 130 130 HOH HOH . Q 5 HOH B 70 131 131 HOH HOH . Q 5 HOH B 71 132 132 HOH HOH . Q 5 HOH B 72 133 133 HOH HOH . Q 5 HOH B 73 134 134 HOH HOH . Q 5 HOH B 74 140 140 HOH HOH . Q 5 HOH B 75 141 141 HOH HOH . Q 5 HOH B 76 142 142 HOH HOH . Q 5 HOH B 77 143 143 HOH HOH . Q 5 HOH B 78 151 151 HOH HOH . Q 5 HOH B 79 153 153 HOH HOH . Q 5 HOH B 80 155 155 HOH HOH . Q 5 HOH B 81 156 156 HOH HOH . Q 5 HOH B 82 157 157 HOH HOH . Q 5 HOH B 83 159 159 HOH HOH . Q 5 HOH B 84 168 168 HOH HOH . Q 5 HOH B 85 169 169 HOH HOH . Q 5 HOH B 86 170 170 HOH HOH . Q 5 HOH B 87 171 171 HOH HOH . R 5 HOH Q 1 51 39 HOH HOH . R 5 HOH Q 2 52 41 HOH HOH . R 5 HOH Q 3 154 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.436 _atom_site.Cartn_y 7.871 _atom_site.Cartn_z 18.544 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 307 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #