data_3SWZ
#
_model_server_result.job_id            SRXYJ964HRPmFCRN6-50Bw 
_model_server_result.datetime_utc      '2024-11-25 01:27:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3swz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    3SWZ 
#
_exptl.entry_id    3SWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.545 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3alpha,8alpha)-17-(1H-benzimidazol-1-yl)androsta-5,16-dien-3-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SWZ 
_cell.length_a            91.415 
_cell.length_b            152.09 
_cell.length_c            167.656 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 424 A CYS 442 1_555 E FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc2 E FE HEM . A HEM 600 1_555 F N51 TOK . A TOK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 B SG CYS 424 B CYS 442 1_555 G FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 G FE HEM . B HEM 600 1_555 H N51 TOK . B TOK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 C SG CYS 424 C CYS 442 1_555 I FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc6 I FE HEM . C HEM 600 1_555 J N51 TOK . C TOK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc7 D SG CYS 424 D CYS 442 1_555 K FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc8 K FE HEM . D HEM 600 1_555 L N51 TOK . D TOK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
#
_chem_comp.formula           'C26 H32 N2 O' 
_chem_comp.formula_weight    388.545 
_chem_comp.id                TOK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3alpha,8alpha)-17-(1H-benzimidazol-1-yl)androsta-5,16-dien-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 H1 TOK sing 388 n n 
C1 H1A TOK sing 389 n n 
C2 C1 TOK sing 390 n n 
C2 H2 TOK sing 391 n n 
C2 H2A TOK sing 392 n n 
C3 C2 TOK sing 393 n n 
C3 H3 TOK sing 394 n n 
O3 C3 TOK sing 395 n n 
O3 HO3 TOK sing 396 n n 
C4 C3 TOK sing 397 n n 
C4 C5 TOK sing 398 n n 
C4 H4 TOK sing 399 n n 
C4 H4A TOK sing 400 n n 
C5 C10 TOK sing 401 n n 
C6 C5 TOK doub 402 n n 
C6 C7 TOK sing 403 n n 
C6 H6 TOK sing 404 n n 
C7 C8 TOK sing 405 n n 
C7 H7 TOK sing 406 n n 
C7 H7A TOK sing 407 n n 
C8 C14 TOK sing 408 n n 
C8 C9 TOK sing 409 n n 
C8 H8 TOK sing 410 n n 
C9 C11 TOK sing 411 n n 
C9 H9 TOK sing 412 n n 
C10 C1 TOK sing 413 n n 
C10 C9 TOK sing 414 n n 
C11 C12 TOK sing 415 n n 
C11 H11 TOK sing 416 n n 
C11 H11A TOK sing 417 n n 
C12 H12 TOK sing 418 n n 
C12 H12A TOK sing 419 n n 
C13 C12 TOK sing 420 n n 
C13 C17 TOK sing 421 n n 
C14 C13 TOK sing 422 n n 
C14 H14 TOK sing 423 n n 
C15 C14 TOK sing 424 n n 
C15 C16 TOK sing 425 n n 
C15 H15 TOK sing 426 n n 
C16 C17 TOK doub 427 n n 
C16 H16 TOK sing 428 n n 
C17 N48 TOK sing 429 n n 
C18 C13 TOK sing 430 n n 
C18 H18 TOK sing 431 n n 
C18 H18A TOK sing 432 n n 
C18 H18B TOK sing 433 n n 
C19 C10 TOK sing 434 n n 
C19 H19 TOK sing 435 n n 
C19 H19A TOK sing 436 n n 
C19 H19B TOK sing 437 n n 
N48 C52 TOK sing 438 n y 
N48 C49 TOK sing 439 n y 
C49 C53 TOK sing 440 n y 
C49 C50 TOK doub 441 n y 
C50 C56 TOK sing 442 n y 
N51 C50 TOK sing 443 n y 
C52 N51 TOK doub 444 n y 
C52 H52 TOK sing 445 n n 
C53 C54 TOK doub 446 n y 
C53 H53 TOK sing 447 n n 
C54 C55 TOK sing 448 n y 
C54 H54 TOK sing 449 n n 
C55 H55 TOK sing 450 n n 
C56 C55 TOK doub 451 n y 
C56 H56 TOK sing 452 n n 
C15 H15A TOK sing 453 n n 
#
_atom_sites.entry_id                     3SWZ 
_atom_sites.fract_transf_matrix[1][1]    0.010939 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 TOK A 1 601 601 TOK TOK . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 TOK B 1 601 601 TOK TOK . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 TOK C 1 601 601 TOK TOK . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 TOK D 1 601 601 TOK TOK . 
M 4 HOH A 1 4 4 HOH HOH . 
M 4 HOH A 2 5 5 HOH HOH . 
M 4 HOH A 3 6 6 HOH HOH . 
M 4 HOH A 4 11 11 HOH HOH . 
M 4 HOH A 5 12 12 HOH HOH . 
M 4 HOH A 6 14 14 HOH HOH . 
M 4 HOH A 7 513 513 HOH HOH . 
M 4 HOH A 8 514 514 HOH HOH . 
M 4 HOH A 9 515 515 HOH HOH . 
M 4 HOH A 10 516 516 HOH HOH . 
M 4 HOH A 11 517 517 HOH HOH . 
M 4 HOH A 12 518 518 HOH HOH . 
M 4 HOH A 13 519 519 HOH HOH . 
M 4 HOH A 14 520 520 HOH HOH . 
M 4 HOH A 15 521 521 HOH HOH . 
M 4 HOH A 16 522 522 HOH HOH . 
M 4 HOH A 17 523 523 HOH HOH . 
M 4 HOH A 18 524 524 HOH HOH . 
M 4 HOH A 19 525 525 HOH HOH . 
M 4 HOH A 20 526 526 HOH HOH . 
M 4 HOH A 21 527 527 HOH HOH . 
M 4 HOH A 22 528 528 HOH HOH . 
M 4 HOH A 23 529 529 HOH HOH . 
M 4 HOH A 24 530 530 HOH HOH . 
M 4 HOH A 25 531 531 HOH HOH . 
M 4 HOH A 26 532 532 HOH HOH . 
N 4 HOH B 1 10 10 HOH HOH . 
N 4 HOH B 2 17 17 HOH HOH . 
N 4 HOH B 3 18 18 HOH HOH . 
N 4 HOH B 4 513 513 HOH HOH . 
N 4 HOH B 5 514 514 HOH HOH . 
N 4 HOH B 6 515 515 HOH HOH . 
N 4 HOH B 7 516 516 HOH HOH . 
N 4 HOH B 8 517 517 HOH HOH . 
N 4 HOH B 9 518 518 HOH HOH . 
N 4 HOH B 10 519 519 HOH HOH . 
N 4 HOH B 11 520 520 HOH HOH . 
N 4 HOH B 12 521 521 HOH HOH . 
N 4 HOH B 13 522 522 HOH HOH . 
N 4 HOH B 14 523 523 HOH HOH . 
N 4 HOH B 15 524 524 HOH HOH . 
N 4 HOH B 16 525 525 HOH HOH . 
N 4 HOH B 17 526 526 HOH HOH . 
N 4 HOH B 18 527 527 HOH HOH . 
N 4 HOH B 19 528 528 HOH HOH . 
N 4 HOH B 20 529 529 HOH HOH . 
N 4 HOH B 21 530 530 HOH HOH . 
N 4 HOH B 22 531 531 HOH HOH . 
N 4 HOH B 23 532 532 HOH HOH . 
O 4 HOH C 1 1 1 HOH HOH . 
O 4 HOH C 2 2 2 HOH HOH . 
O 4 HOH C 3 8 8 HOH HOH . 
O 4 HOH C 4 13 13 HOH HOH . 
O 4 HOH C 5 15 15 HOH HOH . 
O 4 HOH C 6 16 16 HOH HOH . 
O 4 HOH C 7 513 513 HOH HOH . 
O 4 HOH C 8 514 514 HOH HOH . 
O 4 HOH C 9 515 515 HOH HOH . 
O 4 HOH C 10 516 516 HOH HOH . 
O 4 HOH C 11 517 517 HOH HOH . 
O 4 HOH C 12 518 518 HOH HOH . 
O 4 HOH C 13 519 519 HOH HOH . 
O 4 HOH C 14 520 520 HOH HOH . 
O 4 HOH C 15 521 521 HOH HOH . 
O 4 HOH C 16 522 522 HOH HOH . 
O 4 HOH C 17 523 523 HOH HOH . 
O 4 HOH C 18 524 524 HOH HOH . 
O 4 HOH C 19 525 525 HOH HOH . 
O 4 HOH C 20 526 526 HOH HOH . 
O 4 HOH C 21 527 527 HOH HOH . 
O 4 HOH C 22 528 528 HOH HOH . 
P 4 HOH D 1 3 3 HOH HOH . 
P 4 HOH D 2 7 7 HOH HOH . 
P 4 HOH D 3 9 9 HOH HOH . 
P 4 HOH D 4 513 513 HOH HOH . 
P 4 HOH D 5 514 514 HOH HOH . 
P 4 HOH D 6 515 515 HOH HOH . 
P 4 HOH D 7 516 516 HOH HOH . 
P 4 HOH D 8 517 517 HOH HOH . 
P 4 HOH D 9 518 518 HOH HOH . 
P 4 HOH D 10 519 519 HOH HOH . 
P 4 HOH D 11 520 520 HOH HOH . 
P 4 HOH D 12 521 521 HOH HOH . 
P 4 HOH D 13 522 522 HOH HOH . 
P 4 HOH D 14 523 523 HOH HOH . 
P 4 HOH D 15 524 524 HOH HOH . 
P 4 HOH D 16 525 525 HOH HOH . 
P 4 HOH D 17 526 526 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TOK . . . F 3 16.393 -0.761 35.49 1 36.94 ? C1 TOK 601 A 1 
HETATM 2 C C2 TOK . . . F 3 16.093 -2.227 35.266 1 37.58 ? C2 TOK 601 A 1 
HETATM 3 C C3 TOK . . . F 3 14.84 -2.463 34.422 1 38.85 ? C3 TOK 601 A 1 
HETATM 4 O O3 TOK . . . F 3 14.692 -3.879 34.218 1 39.34 ? O3 TOK 601 A 1 
HETATM 5 C C4 TOK . . . F 3 14.913 -1.705 33.096 1 36.02 ? C4 TOK 601 A 1 
HETATM 6 C C5 TOK . . . F 3 15.134 -0.248 33.432 1 37.97 ? C5 TOK 601 A 1 
HETATM 7 C C6 TOK . . . F 3 14.26 0.692 33.019 1 38.36 ? C6 TOK 601 A 1 
HETATM 8 C C7 TOK . . . F 3 14.651 2.149 32.873 1 39.46 ? C7 TOK 601 A 1 
HETATM 9 C C8 TOK . . . F 3 15.919 2.55 33.651 1 39.9 ? C8 TOK 601 A 1 
HETATM 10 C C9 TOK . . . F 3 16.203 1.57 34.779 1 40.21 ? C9 TOK 601 A 1 
HETATM 11 C C10 TOK . . . F 3 16.347 0.136 34.25 1 38.84 ? C10 TOK 601 A 1 
HETATM 12 C C11 TOK . . . F 3 17.364 1.98 35.726 1 41.34 ? C11 TOK 601 A 1 
HETATM 13 C C12 TOK . . . F 3 17.533 3.476 36.07 1 40.66 ? C12 TOK 601 A 1 
HETATM 14 C C13 TOK . . . F 3 17.16 4.408 34.925 1 42.32 ? C13 TOK 601 A 1 
HETATM 15 C C14 TOK . . . F 3 15.831 3.917 34.345 1 42.14 ? C14 TOK 601 A 1 
HETATM 16 C C15 TOK . . . F 3 15.195 5.102 33.625 1 41.31 ? C15 TOK 601 A 1 
HETATM 17 C C16 TOK . . . F 3 15.801 6.216 34.454 1 42.82 ? C16 TOK 601 A 1 
HETATM 18 C C17 TOK . . . F 3 16.753 5.806 35.306 1 42.22 ? C17 TOK 601 A 1 
HETATM 19 C C18 TOK . . . F 3 18.279 4.572 33.885 1 41.66 ? C18 TOK 601 A 1 
HETATM 20 C C19 TOK . . . F 3 17.606 0.023 33.358 1 36.24 ? C19 TOK 601 A 1 
HETATM 21 N N48 TOK . . . F 3 17.219 6.586 36.368 1 43.86 ? N48 TOK 601 A 1 
HETATM 22 C C49 TOK . . . F 3 18.47 6.617 36.897 1 44.23 ? C49 TOK 601 A 1 
HETATM 23 C C50 TOK . . . F 3 18.378 7.543 37.944 1 42.6 ? C50 TOK 601 A 1 
HETATM 24 N N51 TOK . . . F 3 17.113 8.007 37.974 1 43.56 ? N51 TOK 601 A 1 
HETATM 25 C C52 TOK . . . F 3 16.394 7.411 37.001 1 42.69 ? C52 TOK 601 A 1 
HETATM 26 C C53 TOK . . . F 3 19.702 5.998 36.64 1 41.93 ? C53 TOK 601 A 1 
HETATM 27 C C54 TOK . . . F 3 20.812 6.307 37.441 1 42.91 ? C54 TOK 601 A 1 
HETATM 28 C C55 TOK . . . F 3 20.719 7.242 38.472 1 42.22 ? C55 TOK 601 A 1 
HETATM 29 C C56 TOK . . . F 3 19.494 7.853 38.722 1 43.61 ? C56 TOK 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           29 
#