data_3SX0
#
_model_server_result.job_id            tw6Ldyk3rUriUdgP7uWy4Q 
_model_server_result.datetime_utc      '2024-12-03 18:01:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sx0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":421}' 
#
_entry.id    3SX0 
#
_exptl.entry_id    3SX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              462.319 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-amino-4-({[(2S,3S,4R,5R)-5-(4-amino-5-bromo-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)butanoic acid (non-preferred name)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SX0 
_cell.length_a            152.917 
_cell.length_b            152.917 
_cell.length_c            50.964 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H20 Br N5 O5 S' 
_chem_comp.formula_weight    462.319 
_chem_comp.id                SX0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-amino-4-({[(2S,3S,4R,5R)-5-(4-amino-5-bromo-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)butanoic acid (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C SX0 sing 294 n n 
C OXT SX0 doub 295 n n 
C O SX0 sing 296 n n 
CA N SX0 sing 297 n n 
N HN SX0 sing 298 n n 
N HNA SX0 sing 299 n n 
O HO SX0 sing 300 n n 
BR C7 SX0 sing 301 n n 
C6 N1 SX0 doub 302 n y 
N1 C2 SX0 sing 303 n y 
C2 N3 SX0 doub 304 n y 
C2 H2 SX0 sing 305 n n 
C4 N3 SX0 sing 306 n y 
C5 C4 SX0 doub 307 n y 
C4 N9 SX0 sing 308 n y 
C6 C5 SX0 sing 309 n y 
C7 C5 SX0 sing 310 n y 
N6 C6 SX0 sing 311 n n 
N6 HN6 SX0 sing 312 n n 
N6 HN6A SX0 sing 313 n n 
C7 C8 SX0 doub 314 n y 
C8 N9 SX0 sing 315 n y 
C8 H8 SX0 sing 316 n n 
N9 C1' SX0 sing 317 n n 
CB CA SX0 sing 318 n n 
CA HA SX0 sing 319 n n 
CB CG SX0 sing 320 n n 
CB HB SX0 sing 321 n n 
CB HBA SX0 sing 322 n n 
C5' SD SX0 sing 323 n n 
SD CG SX0 sing 324 n n 
CG HG SX0 sing 325 n n 
CG HGA SX0 sing 326 n n 
C2' C1' SX0 sing 327 n n 
C1' O4' SX0 sing 328 n n 
C1' H1' SX0 sing 329 n n 
O2' C2' SX0 sing 330 n n 
C2' C3' SX0 sing 331 n n 
C2' H2' SX0 sing 332 n n 
O2' HO2' SX0 sing 333 n n 
O3' C3' SX0 sing 334 n n 
C3' C4' SX0 sing 335 n n 
C3' H3' SX0 sing 336 n n 
O3' HO3' SX0 sing 337 n n 
O4' C4' SX0 sing 338 n n 
C4' C5' SX0 sing 339 n n 
C4' H4' SX0 sing 340 n n 
C5' H5' SX0 sing 341 n n 
C5' "H5'A" SX0 sing 342 n n 
#
_atom_sites.entry_id                     3SX0 
_atom_sites.fract_transf_matrix[1][1]    0.006539 
_atom_sites.fract_transf_matrix[1][2]    0.003776 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007551 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SX0 A 1 421 1 SX0 SAX . 
C 3 SO4 A 1 422 1 SO4 SO4 . 
D 4 UNX A 1 423 1 UNX UNX . 
E 4 UNX A 1 424 2 UNX UNX . 
F 4 UNX A 1 425 4 UNX UNX . 
G 4 UNX A 1 426 5 UNX UNX . 
H 4 UNX A 1 427 6 UNX UNX . 
I 4 UNX A 1 428 7 UNX UNX . 
J 4 UNX A 1 429 8 UNX UNX . 
K 4 UNX A 1 430 9 UNX UNX . 
L 4 UNX A 1 431 10 UNX UNX . 
M 4 UNX A 1 432 11 UNX UNX . 
N 4 UNX A 1 433 13 UNX UNX . 
O 4 UNX A 1 434 14 UNX UNX . 
P 4 UNX A 1 435 15 UNX UNX . 
Q 4 UNX A 1 436 17 UNX UNX . 
R 4 UNX A 1 437 18 UNX UNX . 
S 4 UNX A 1 438 19 UNX UNX . 
T 4 UNX A 1 439 20 UNX UNX . 
U 4 UNX A 1 440 21 UNX UNX . 
V 4 UNX A 1 441 22 UNX UNX . 
W 4 UNX A 1 442 23 UNX UNX . 
X 5 HOH A 1 443 1 HOH HOH . 
X 5 HOH A 2 444 9 HOH HOH . 
X 5 HOH A 3 445 11 HOH HOH . 
X 5 HOH A 4 446 12 HOH HOH . 
X 5 HOH A 5 447 13 HOH HOH . 
X 5 HOH A 6 448 16 HOH HOH . 
X 5 HOH A 7 449 17 HOH HOH . 
X 5 HOH A 8 450 19 HOH HOH . 
X 5 HOH A 9 451 20 HOH HOH . 
X 5 HOH A 10 452 21 HOH HOH . 
X 5 HOH A 11 453 22 HOH HOH . 
X 5 HOH A 12 454 23 HOH HOH . 
X 5 HOH A 13 455 24 HOH HOH . 
X 5 HOH A 14 456 25 HOH HOH . 
X 5 HOH A 15 457 26 HOH HOH . 
X 5 HOH A 16 458 27 HOH HOH . 
X 5 HOH A 17 459 28 HOH HOH . 
X 5 HOH A 18 460 29 HOH HOH . 
X 5 HOH A 19 461 30 HOH HOH . 
X 5 HOH A 20 462 31 HOH HOH . 
X 5 HOH A 21 463 32 HOH HOH . 
X 5 HOH A 22 464 33 HOH HOH . 
X 5 HOH A 23 465 34 HOH HOH . 
X 5 HOH A 24 466 35 HOH HOH . 
X 5 HOH A 25 467 36 HOH HOH . 
X 5 HOH A 26 468 38 HOH HOH . 
X 5 HOH A 27 469 39 HOH HOH . 
X 5 HOH A 28 470 40 HOH HOH . 
X 5 HOH A 29 471 41 HOH HOH . 
X 5 HOH A 30 472 42 HOH HOH . 
X 5 HOH A 31 473 44 HOH HOH . 
X 5 HOH A 32 474 47 HOH HOH . 
X 5 HOH A 33 475 49 HOH HOH . 
X 5 HOH A 34 476 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C SX0 . . . B 2 25.35 63.244 -2.719 1 34.2 ? C SX0 421 A 1 
HETATM 2 N N SX0 . . . B 2 23.359 61.91 -3.229 1 34.89 ? N SX0 421 A 1 
HETATM 3 O O SX0 . . . B 2 24.568 63.917 -2.033 1 33.88 ? O SX0 421 A 1 
HETATM 4 BR BR SX0 . . . B 2 15.391 64.48 -10.875 1 53.24 ? BR SX0 421 A 1 
HETATM 5 N N1 SX0 . . . B 2 16.028 59.659 -10.238 1 42.98 ? N1 SX0 421 A 1 
HETATM 6 C C2 SX0 . . . B 2 17.271 59.329 -9.888 1 44.26 ? C2 SX0 421 A 1 
HETATM 7 N N3 SX0 . . . B 2 18.247 60.219 -9.744 1 41.3 ? N3 SX0 421 A 1 
HETATM 8 C C4 SX0 . . . B 2 17.994 61.514 -9.94 1 41.44 ? C4 SX0 421 A 1 
HETATM 9 C C5 SX0 . . . B 2 16.719 61.905 -10.304 1 43.31 ? C5 SX0 421 A 1 
HETATM 10 C C6 SX0 . . . B 2 15.712 60.938 -10.463 1 44.56 ? C6 SX0 421 A 1 
HETATM 11 N N6 SX0 . . . B 2 14.461 61.235 -10.816 1 43.58 ? N6 SX0 421 A 1 
HETATM 12 C C7 SX0 . . . B 2 16.815 63.277 -10.425 1 46.18 ? C7 SX0 421 A 1 
HETATM 13 C C8 SX0 . . . B 2 18.066 63.678 -10.152 1 41.28 ? C8 SX0 421 A 1 
HETATM 14 N N9 SX0 . . . B 2 18.778 62.59 -9.864 1 40.97 ? N9 SX0 421 A 1 
HETATM 15 C CA SX0 . . . B 2 24.719 62.273 -3.725 1 34.36 ? CA SX0 421 A 1 
HETATM 16 C CB SX0 . . . B 2 24.638 62.941 -5.117 1 34.32 ? CB SX0 421 A 1 
HETATM 17 S SD SX0 . . . B 2 23.647 65.027 -6.759 1 37.42 ? SD SX0 421 A 1 
HETATM 18 C CG SX0 . . . B 2 23.788 64.211 -5.105 1 33.88 ? CG SX0 421 A 1 
HETATM 19 C C1' SX0 . . . B 2 20.221 62.546 -9.472 1 38.13 ? C1' SX0 421 A 1 
HETATM 20 C C2' SX0 . . . B 2 21.121 63.377 -10.388 1 37.18 ? C2' SX0 421 A 1 
HETATM 21 O O2' SX0 . . . B 2 21.401 62.526 -11.45 1 35.46 ? O2' SX0 421 A 1 
HETATM 22 C C3' SX0 . . . B 2 22.385 63.556 -9.505 1 36.58 ? C3' SX0 421 A 1 
HETATM 23 O O3' SX0 . . . B 2 23.291 62.459 -9.755 1 33.87 ? O3' SX0 421 A 1 
HETATM 24 C C4' SX0 . . . B 2 21.815 63.42 -8.077 1 35.6 ? C4' SX0 421 A 1 
HETATM 25 O O4' SX0 . . . B 2 20.369 63.232 -8.223 1 36.84 ? O4' SX0 421 A 1 
HETATM 26 C C5' SX0 . . . B 2 21.918 64.668 -7.233 1 36.49 ? C5' SX0 421 A 1 
HETATM 27 O OXT SX0 . . . B 2 26.593 63.311 -2.671 1 33.93 ? OXT SX0 421 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#