data_3SX5 # _model_server_result.job_id Z8-qMTldoxbHQd0UObUQ-w _model_server_result.datetime_utc '2024-11-05 04:48:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4}' # _entry.id 3SX5 # _exptl.entry_id 3SX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SX5 _cell.length_a 52.5 _cell.length_b 149.78 _cell.length_c 79.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -52.5 0 39.665 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3B UDP . A UDP 1 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 B O1A UDP . A UDP 1 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A OD2 ASP 150 A ASP 211 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 A OD1 ASP 152 A ASP 213 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 A OD2 ASP 152 A ASP 213 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 261 n n C1 C2 PEG sing 262 n n C1 H11 PEG sing 263 n n C1 H12 PEG sing 264 n n O1 HO1 PEG sing 265 n n C2 O2 PEG sing 266 n n C2 H21 PEG sing 267 n n C2 H22 PEG sing 268 n n O2 C3 PEG sing 269 n n C3 C4 PEG sing 270 n n C3 H31 PEG sing 271 n n C3 H32 PEG sing 272 n n C4 O4 PEG sing 273 n n C4 H41 PEG sing 274 n n C4 H42 PEG sing 275 n n O4 HO4 PEG sing 276 n n # _atom_sites.entry_id 3SX5 _atom_sites.fract_transf_matrix[1][1] 0.019048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 1 1 UDP UDP . C 3 GAL A 1 2 2 GAL GAL . D 4 PEG A 1 4 4 PEG PEG . E 5 MN A 1 355 259 MN MN . F 6 HOH A 1 3 3 HOH HOH . F 6 HOH A 2 5 5 HOH HOH . F 6 HOH A 3 6 6 HOH HOH . F 6 HOH A 4 7 7 HOH HOH . F 6 HOH A 5 8 8 HOH HOH . F 6 HOH A 6 9 9 HOH HOH . F 6 HOH A 7 10 10 HOH HOH . F 6 HOH A 8 11 11 HOH HOH . F 6 HOH A 9 12 12 HOH HOH . F 6 HOH A 10 13 13 HOH HOH . F 6 HOH A 11 14 14 HOH HOH . F 6 HOH A 12 15 15 HOH HOH . F 6 HOH A 13 16 16 HOH HOH . F 6 HOH A 14 17 17 HOH HOH . F 6 HOH A 15 18 18 HOH HOH . F 6 HOH A 16 19 19 HOH HOH . F 6 HOH A 17 20 20 HOH HOH . F 6 HOH A 18 21 21 HOH HOH . F 6 HOH A 19 22 22 HOH HOH . F 6 HOH A 20 23 23 HOH HOH . F 6 HOH A 21 24 24 HOH HOH . F 6 HOH A 22 25 25 HOH HOH . F 6 HOH A 23 26 26 HOH HOH . F 6 HOH A 24 27 27 HOH HOH . F 6 HOH A 25 28 28 HOH HOH . F 6 HOH A 26 29 29 HOH HOH . F 6 HOH A 27 30 30 HOH HOH . F 6 HOH A 28 31 31 HOH HOH . F 6 HOH A 29 32 32 HOH HOH . F 6 HOH A 30 33 33 HOH HOH . F 6 HOH A 31 34 34 HOH HOH . F 6 HOH A 32 35 35 HOH HOH . F 6 HOH A 33 36 36 HOH HOH . F 6 HOH A 34 37 37 HOH HOH . F 6 HOH A 35 38 38 HOH HOH . F 6 HOH A 36 39 39 HOH HOH . F 6 HOH A 37 40 40 HOH HOH . F 6 HOH A 38 41 41 HOH HOH . F 6 HOH A 39 42 42 HOH HOH . F 6 HOH A 40 43 43 HOH HOH . F 6 HOH A 41 44 44 HOH HOH . F 6 HOH A 42 45 45 HOH HOH . F 6 HOH A 43 46 46 HOH HOH . F 6 HOH A 44 47 47 HOH HOH . F 6 HOH A 45 48 48 HOH HOH . F 6 HOH A 46 49 49 HOH HOH . F 6 HOH A 47 50 50 HOH HOH . F 6 HOH A 48 51 51 HOH HOH . F 6 HOH A 49 52 52 HOH HOH . F 6 HOH A 50 53 53 HOH HOH . F 6 HOH A 51 54 54 HOH HOH . F 6 HOH A 52 55 55 HOH HOH . F 6 HOH A 53 56 56 HOH HOH . F 6 HOH A 54 57 57 HOH HOH . F 6 HOH A 55 58 58 HOH HOH . F 6 HOH A 56 59 59 HOH HOH . F 6 HOH A 57 60 60 HOH HOH . F 6 HOH A 58 61 61 HOH HOH . F 6 HOH A 59 356 1 HOH HOH . F 6 HOH A 60 357 2 HOH HOH . F 6 HOH A 61 358 4 HOH HOH . F 6 HOH A 62 359 62 HOH HOH . F 6 HOH A 63 360 63 HOH HOH . F 6 HOH A 64 361 64 HOH HOH . F 6 HOH A 65 362 65 HOH HOH . F 6 HOH A 66 363 66 HOH HOH . F 6 HOH A 67 364 67 HOH HOH . F 6 HOH A 68 365 68 HOH HOH . F 6 HOH A 69 366 69 HOH HOH . F 6 HOH A 70 367 70 HOH HOH . F 6 HOH A 71 368 71 HOH HOH . F 6 HOH A 72 369 72 HOH HOH . F 6 HOH A 73 370 73 HOH HOH . F 6 HOH A 74 371 74 HOH HOH . F 6 HOH A 75 372 75 HOH HOH . F 6 HOH A 76 373 76 HOH HOH . F 6 HOH A 77 374 77 HOH HOH . F 6 HOH A 78 375 78 HOH HOH . F 6 HOH A 79 376 79 HOH HOH . F 6 HOH A 80 377 80 HOH HOH . F 6 HOH A 81 378 81 HOH HOH . F 6 HOH A 82 379 82 HOH HOH . F 6 HOH A 83 380 83 HOH HOH . F 6 HOH A 84 381 84 HOH HOH . F 6 HOH A 85 382 85 HOH HOH . F 6 HOH A 86 383 86 HOH HOH . F 6 HOH A 87 384 87 HOH HOH . F 6 HOH A 88 385 88 HOH HOH . F 6 HOH A 89 386 89 HOH HOH . F 6 HOH A 90 387 90 HOH HOH . F 6 HOH A 91 388 91 HOH HOH . F 6 HOH A 92 389 92 HOH HOH . F 6 HOH A 93 390 93 HOH HOH . F 6 HOH A 94 391 94 HOH HOH . F 6 HOH A 95 392 95 HOH HOH . F 6 HOH A 96 393 96 HOH HOH . F 6 HOH A 97 394 97 HOH HOH . F 6 HOH A 98 395 98 HOH HOH . F 6 HOH A 99 396 99 HOH HOH . F 6 HOH A 100 397 100 HOH HOH . F 6 HOH A 101 398 101 HOH HOH . F 6 HOH A 102 399 102 HOH HOH . F 6 HOH A 103 400 103 HOH HOH . F 6 HOH A 104 401 104 HOH HOH . F 6 HOH A 105 402 105 HOH HOH . F 6 HOH A 106 403 106 HOH HOH . F 6 HOH A 107 404 107 HOH HOH . F 6 HOH A 108 405 108 HOH HOH . F 6 HOH A 109 406 109 HOH HOH . F 6 HOH A 110 407 110 HOH HOH . F 6 HOH A 111 408 111 HOH HOH . F 6 HOH A 112 409 112 HOH HOH . F 6 HOH A 113 410 113 HOH HOH . F 6 HOH A 114 411 114 HOH HOH . F 6 HOH A 115 412 115 HOH HOH . F 6 HOH A 116 413 116 HOH HOH . F 6 HOH A 117 414 117 HOH HOH . F 6 HOH A 118 415 118 HOH HOH . F 6 HOH A 119 416 119 HOH HOH . F 6 HOH A 120 417 120 HOH HOH . F 6 HOH A 121 418 121 HOH HOH . F 6 HOH A 122 419 122 HOH HOH . F 6 HOH A 123 420 123 HOH HOH . F 6 HOH A 124 421 124 HOH HOH . F 6 HOH A 125 422 125 HOH HOH . F 6 HOH A 126 423 126 HOH HOH . F 6 HOH A 127 424 127 HOH HOH . F 6 HOH A 128 425 128 HOH HOH . F 6 HOH A 129 426 129 HOH HOH . F 6 HOH A 130 427 130 HOH HOH . F 6 HOH A 131 428 131 HOH HOH . F 6 HOH A 132 429 132 HOH HOH . F 6 HOH A 133 430 133 HOH HOH . F 6 HOH A 134 431 134 HOH HOH . F 6 HOH A 135 432 135 HOH HOH . F 6 HOH A 136 433 136 HOH HOH . F 6 HOH A 137 434 137 HOH HOH . F 6 HOH A 138 435 138 HOH HOH . F 6 HOH A 139 436 139 HOH HOH . F 6 HOH A 140 437 140 HOH HOH . F 6 HOH A 141 438 141 HOH HOH . F 6 HOH A 142 439 142 HOH HOH . F 6 HOH A 143 440 143 HOH HOH . F 6 HOH A 144 441 144 HOH HOH . F 6 HOH A 145 442 145 HOH HOH . F 6 HOH A 146 443 146 HOH HOH . F 6 HOH A 147 444 147 HOH HOH . F 6 HOH A 148 445 148 HOH HOH . F 6 HOH A 149 446 149 HOH HOH . F 6 HOH A 150 447 150 HOH HOH . F 6 HOH A 151 448 151 HOH HOH . F 6 HOH A 152 449 152 HOH HOH . F 6 HOH A 153 450 153 HOH HOH . F 6 HOH A 154 451 154 HOH HOH . F 6 HOH A 155 452 155 HOH HOH . F 6 HOH A 156 453 156 HOH HOH . F 6 HOH A 157 454 157 HOH HOH . F 6 HOH A 158 455 158 HOH HOH . F 6 HOH A 159 456 159 HOH HOH . F 6 HOH A 160 457 160 HOH HOH . F 6 HOH A 161 458 161 HOH HOH . F 6 HOH A 162 459 162 HOH HOH . F 6 HOH A 163 460 163 HOH HOH . F 6 HOH A 164 461 164 HOH HOH . F 6 HOH A 165 462 165 HOH HOH . F 6 HOH A 166 463 166 HOH HOH . F 6 HOH A 167 464 167 HOH HOH . F 6 HOH A 168 465 168 HOH HOH . F 6 HOH A 169 466 169 HOH HOH . F 6 HOH A 170 467 170 HOH HOH . F 6 HOH A 171 468 171 HOH HOH . F 6 HOH A 172 469 172 HOH HOH . F 6 HOH A 173 470 173 HOH HOH . F 6 HOH A 174 471 174 HOH HOH . F 6 HOH A 175 472 175 HOH HOH . F 6 HOH A 176 473 176 HOH HOH . F 6 HOH A 177 474 177 HOH HOH . F 6 HOH A 178 475 178 HOH HOH . F 6 HOH A 179 476 179 HOH HOH . F 6 HOH A 180 477 180 HOH HOH . F 6 HOH A 181 478 181 HOH HOH . F 6 HOH A 182 479 182 HOH HOH . F 6 HOH A 183 480 183 HOH HOH . F 6 HOH A 184 481 184 HOH HOH . F 6 HOH A 185 482 185 HOH HOH . F 6 HOH A 186 483 186 HOH HOH . F 6 HOH A 187 484 187 HOH HOH . F 6 HOH A 188 485 188 HOH HOH . F 6 HOH A 189 486 189 HOH HOH . F 6 HOH A 190 487 190 HOH HOH . F 6 HOH A 191 488 191 HOH HOH . F 6 HOH A 192 489 192 HOH HOH . F 6 HOH A 193 490 193 HOH HOH . F 6 HOH A 194 491 194 HOH HOH . F 6 HOH A 195 492 195 HOH HOH . F 6 HOH A 196 493 196 HOH HOH . F 6 HOH A 197 494 197 HOH HOH . F 6 HOH A 198 495 198 HOH HOH . F 6 HOH A 199 496 199 HOH HOH . F 6 HOH A 200 497 200 HOH HOH . F 6 HOH A 201 498 201 HOH HOH . F 6 HOH A 202 499 202 HOH HOH . F 6 HOH A 203 500 203 HOH HOH . F 6 HOH A 204 501 204 HOH HOH . F 6 HOH A 205 502 205 HOH HOH . F 6 HOH A 206 503 206 HOH HOH . F 6 HOH A 207 504 207 HOH HOH . F 6 HOH A 208 505 208 HOH HOH . F 6 HOH A 209 506 209 HOH HOH . F 6 HOH A 210 507 210 HOH HOH . F 6 HOH A 211 508 211 HOH HOH . F 6 HOH A 212 509 212 HOH HOH . F 6 HOH A 213 510 213 HOH HOH . F 6 HOH A 214 511 214 HOH HOH . F 6 HOH A 215 512 215 HOH HOH . F 6 HOH A 216 513 216 HOH HOH . F 6 HOH A 217 514 217 HOH HOH . F 6 HOH A 218 515 218 HOH HOH . F 6 HOH A 219 516 219 HOH HOH . F 6 HOH A 220 517 220 HOH HOH . F 6 HOH A 221 518 221 HOH HOH . F 6 HOH A 222 519 222 HOH HOH . F 6 HOH A 223 520 223 HOH HOH . F 6 HOH A 224 521 224 HOH HOH . F 6 HOH A 225 522 225 HOH HOH . F 6 HOH A 226 523 226 HOH HOH . F 6 HOH A 227 524 227 HOH HOH . F 6 HOH A 228 525 228 HOH HOH . F 6 HOH A 229 526 229 HOH HOH . F 6 HOH A 230 527 230 HOH HOH . F 6 HOH A 231 528 231 HOH HOH . F 6 HOH A 232 529 232 HOH HOH . F 6 HOH A 233 530 233 HOH HOH . F 6 HOH A 234 531 234 HOH HOH . F 6 HOH A 235 532 235 HOH HOH . F 6 HOH A 236 533 236 HOH HOH . F 6 HOH A 237 534 237 HOH HOH . F 6 HOH A 238 535 238 HOH HOH . F 6 HOH A 239 536 239 HOH HOH . F 6 HOH A 240 537 240 HOH HOH . F 6 HOH A 241 538 241 HOH HOH . F 6 HOH A 242 539 242 HOH HOH . F 6 HOH A 243 540 243 HOH HOH . F 6 HOH A 244 541 244 HOH HOH . F 6 HOH A 245 542 245 HOH HOH . F 6 HOH A 246 543 246 HOH HOH . F 6 HOH A 247 544 247 HOH HOH . F 6 HOH A 248 545 248 HOH HOH . F 6 HOH A 249 546 249 HOH HOH . F 6 HOH A 250 547 250 HOH HOH . F 6 HOH A 251 548 251 HOH HOH . F 6 HOH A 252 549 252 HOH HOH . F 6 HOH A 253 550 253 HOH HOH . F 6 HOH A 254 551 254 HOH HOH . F 6 HOH A 255 552 255 HOH HOH . F 6 HOH A 256 553 256 HOH HOH . F 6 HOH A 257 554 257 HOH HOH . F 6 HOH A 258 555 258 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 -3.07 -15.521 15.779 1 38.96 ? C1 PEG 4 A 1 HETATM 2 O O1 PEG . . . D 4 -3.716 -14.354 15.393 1 20.41 ? O1 PEG 4 A 1 HETATM 3 C C2 PEG . . . D 4 -3.549 -16.466 16.915 1 28.28 ? C2 PEG 4 A 1 HETATM 4 O O2 PEG . . . D 4 -4.76 -15.998 17.495 1 30.12 ? O2 PEG 4 A 1 HETATM 5 C C3 PEG . . . D 4 -5.045 -15.368 18.733 1 22.52 ? C3 PEG 4 A 1 HETATM 6 C C4 PEG . . . D 4 -6.075 -14.146 19.014 1 38.62 ? C4 PEG 4 A 1 HETATM 7 O O4 PEG . . . D 4 -6.565 -13.464 20.189 1 29.85 ? O4 PEG 4 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #