data_3SX9 # _model_server_result.job_id mLI5Rr32zHTF5F7kZQQfiQ _model_server_result.datetime_utc '2024-11-15 20:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3SX9 # _exptl.entry_id 3SX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.492 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-ethoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.81 _cell.angle_gamma 90 _cell.entry_id 3SX9 _cell.length_a 48.281 _cell.length_b 72.475 _cell.length_c 67.267 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 N6 O' _chem_comp.formula_weight 402.492 _chem_comp.id BK7 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-ethoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RM-1-132 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 BK7 doub 70 n y C2 N1 BK7 sing 71 n y C2 N3 BK7 doub 72 n y N3 C4 BK7 sing 73 n y C4 NBD BK7 sing 74 n y C4 C5 BK7 doub 75 n y C5 CAX BK7 sing 76 n y C6 C5 BK7 sing 77 n y C6 NAB BK7 sing 78 n n CAD CAF BK7 doub 79 n y CAD CAV BK7 sing 80 n y CAE CAC BK7 doub 81 n y CAF CAY BK7 sing 82 n y CAH CAU BK7 doub 83 n y CAI CAZ BK7 sing 84 n y CAJ CAA BK7 sing 85 n n CAJ OAT BK7 sing 86 n n CAK CAM BK7 sing 87 n n CAL NAS BK7 sing 88 n n CAL CAN BK7 sing 89 n n CAM CBC BK7 sing 90 n n CAN CBC BK7 sing 91 n n CAO NBD BK7 sing 92 n n NAR CAX BK7 doub 93 n y NAS CAK BK7 sing 94 n n CAU CAC BK7 sing 95 n y CAU OAT BK7 sing 96 n n CAV CAI BK7 doub 97 n y CAX CAV BK7 sing 98 n n CAY CAH BK7 sing 99 n y CAY CAZ BK7 doub 100 n y CAZ CAE BK7 sing 101 n y CBC CAO BK7 sing 102 n n NBD NAR BK7 sing 103 n y C2 H2 BK7 sing 104 n n CAA HAA BK7 sing 105 n n CAA HAAA BK7 sing 106 n n CAA HAAB BK7 sing 107 n n NAB HNAB BK7 sing 108 n n NAB HNAA BK7 sing 109 n n CAC HAC BK7 sing 110 n n CAD HAD BK7 sing 111 n n CAE HAE BK7 sing 112 n n CAF HAF BK7 sing 113 n n CAH HAH BK7 sing 114 n n CAI HAI BK7 sing 115 n n CAJ HAJ BK7 sing 116 n n CAJ HAJA BK7 sing 117 n n CAK HAK BK7 sing 118 n n CAK HAKA BK7 sing 119 n n CAL HAL BK7 sing 120 n n CAL HALA BK7 sing 121 n n CAM HAM BK7 sing 122 n n CAM HAMA BK7 sing 123 n n CAN HAN BK7 sing 124 n n CAN HANA BK7 sing 125 n n CAO HAO BK7 sing 126 n n CAO HAOA BK7 sing 127 n n NAS HNAS BK7 sing 128 n n CBC HBC BK7 sing 129 n n # _atom_sites.entry_id 3SX9 _atom_sites.fract_transf_matrix[1][1] 0.020712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BK7 A 1 701 701 BK7 BK7 . C 3 HOH A 1 801 801 HOH HOH . C 3 HOH A 2 802 802 HOH HOH . C 3 HOH A 3 803 803 HOH HOH . C 3 HOH A 4 804 804 HOH HOH . C 3 HOH A 5 805 805 HOH HOH . C 3 HOH A 6 806 806 HOH HOH . C 3 HOH A 7 807 807 HOH HOH . C 3 HOH A 8 808 808 HOH HOH . C 3 HOH A 9 809 809 HOH HOH . C 3 HOH A 10 810 810 HOH HOH . C 3 HOH A 11 811 811 HOH HOH . C 3 HOH A 12 812 812 HOH HOH . C 3 HOH A 13 813 813 HOH HOH . C 3 HOH A 14 814 814 HOH HOH . C 3 HOH A 15 815 815 HOH HOH . C 3 HOH A 16 816 816 HOH HOH . C 3 HOH A 17 817 817 HOH HOH . C 3 HOH A 18 818 818 HOH HOH . C 3 HOH A 19 819 819 HOH HOH . C 3 HOH A 20 820 820 HOH HOH . C 3 HOH A 21 821 821 HOH HOH . C 3 HOH A 22 822 822 HOH HOH . C 3 HOH A 23 823 823 HOH HOH . C 3 HOH A 24 824 824 HOH HOH . C 3 HOH A 25 825 825 HOH HOH . C 3 HOH A 26 826 826 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK7 . . . B 2 16.526 11.817 63.058 1 30.34 ? N1 BK7 701 A 1 HETATM 2 C C2 BK7 . . . B 2 17.727 12.38 62.839 1 30.78 ? C2 BK7 701 A 1 HETATM 3 N N3 BK7 . . . B 2 17.812 13.709 62.875 1 31.14 ? N3 BK7 701 A 1 HETATM 4 C C4 BK7 . . . B 2 16.733 14.488 63.141 1 32.43 ? C4 BK7 701 A 1 HETATM 5 C C5 BK7 . . . B 2 15.484 13.928 63.383 1 30.87 ? C5 BK7 701 A 1 HETATM 6 C C6 BK7 . . . B 2 15.401 12.532 63.334 1 29.59 ? C6 BK7 701 A 1 HETATM 7 C CAA BK7 . . . B 2 5.091 14.209 65.144 1 30.66 ? CAA BK7 701 A 1 HETATM 8 N NAB BK7 . . . B 2 14.267 11.882 63.553 1 29.09 ? NAB BK7 701 A 1 HETATM 9 C CAC BK7 . . . B 2 9.521 13.684 66.625 1 28.87 ? CAC BK7 701 A 1 HETATM 10 C CAD BK7 . . . B 2 12.414 15.708 63.072 1 29.6 ? CAD BK7 701 A 1 HETATM 11 C CAE BK7 . . . B 2 10.891 13.67 66.366 1 27.85 ? CAE BK7 701 A 1 HETATM 12 C CAF BK7 . . . B 2 11.044 15.738 63.318 1 27.7 ? CAF BK7 701 A 1 HETATM 13 C CAH BK7 . . . B 2 9.162 15.065 64.684 1 28.51 ? CAH BK7 701 A 1 HETATM 14 C CAI BK7 . . . B 2 12.759 14.336 65.017 1 28.94 ? CAI BK7 701 A 1 HETATM 15 C CAJ BK7 . . . B 2 6.515 14.694 64.894 1 30.91 ? CAJ BK7 701 A 1 HETATM 16 C CAK BK7 . . . B 2 19.875 18.023 60.111 1 50.85 ? CAK BK7 701 A 1 HETATM 17 C CAL BK7 . . . B 2 17.621 17.822 59.286 1 53.85 ? CAL BK7 701 A 1 HETATM 18 C CAM BK7 . . . B 2 19.453 17.733 61.547 1 50.18 ? CAM BK7 701 A 1 HETATM 19 C CAN BK7 . . . B 2 17.126 17.262 60.637 1 52.97 ? CAN BK7 701 A 1 HETATM 20 C CAO BK7 . . . B 2 17.688 16.768 63.042 1 42.35 ? CAO BK7 701 A 1 HETATM 21 N NAR BK7 . . . B 2 15.416 16.121 63.505 1 32.93 ? NAR BK7 701 A 1 HETATM 22 N NAS BK7 . . . B 2 18.764 18.737 59.467 1 52.78 ? NAS BK7 701 A 1 HETATM 23 O OAT BK7 . . . B 2 7.318 14.387 66.048 1 30.97 ? OAT BK7 701 A 1 HETATM 24 C CAU BK7 . . . B 2 8.654 14.381 65.783 1 29.44 ? CAU BK7 701 A 1 HETATM 25 C CAV BK7 . . . B 2 13.285 15.007 63.911 1 30.01 ? CAV BK7 701 A 1 HETATM 26 C CAX BK7 . . . B 2 14.655 15.027 63.623 1 31.41 ? CAX BK7 701 A 1 HETATM 27 C CAY BK7 . . . B 2 10.528 15.058 64.42 1 28.48 ? CAY BK7 701 A 1 HETATM 28 C CAZ BK7 . . . B 2 11.391 14.356 65.267 1 28.2 ? CAZ BK7 701 A 1 HETATM 29 C CBC BK7 . . . B 2 18.242 16.794 61.588 1 46.94 ? CBC BK7 701 A 1 HETATM 30 N NBD BK7 . . . B 2 16.579 15.802 63.235 1 34.99 ? NBD BK7 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #