data_3SXA # _model_server_result.job_id xqojf_0w9NnE7T-X939XkQ _model_server_result.datetime_utc '2024-11-26 22:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3SXA # _exptl.entry_id 3SXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SXA _cell.length_a 52.48 _cell.length_b 149.74 _cell.length_c 79.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -52.48 0 -39.805 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3B UDP . A UDP 1 1_555 E MN MN . A MN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 B O1A UDP . A UDP 1 1_555 E MN MN . A MN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 E MN MN . A MN 6 1_555 A OD2 ASP 150 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 E MN MN . A MN 6 1_555 A OD1 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 E MN MN . A MN 6 1_555 A OD2 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 E MN MN . A MN 6 1_555 G O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 3SXA _atom_sites.fract_transf_matrix[1][1] 0.019055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 1 1 UDP UDP . C 3 GAL A 1 2 2 GAL GAL . D 4 GOL A 1 3 3 GOL GOL . E 5 MN A 1 6 6 MN MN . F 6 PEG A 1 7 7 PEG PEG . G 7 HOH A 1 4 4 HOH HOH . G 7 HOH A 2 5 5 HOH HOH . G 7 HOH A 3 8 8 HOH HOH . G 7 HOH A 4 9 9 HOH HOH . G 7 HOH A 5 10 10 HOH HOH . G 7 HOH A 6 11 11 HOH HOH . G 7 HOH A 7 12 12 HOH HOH . G 7 HOH A 8 13 13 HOH HOH . G 7 HOH A 9 14 14 HOH HOH . G 7 HOH A 10 15 15 HOH HOH . G 7 HOH A 11 16 16 HOH HOH . G 7 HOH A 12 17 17 HOH HOH . G 7 HOH A 13 18 18 HOH HOH . G 7 HOH A 14 19 19 HOH HOH . G 7 HOH A 15 20 20 HOH HOH . G 7 HOH A 16 21 21 HOH HOH . G 7 HOH A 17 22 22 HOH HOH . G 7 HOH A 18 23 23 HOH HOH . G 7 HOH A 19 24 24 HOH HOH . G 7 HOH A 20 25 25 HOH HOH . G 7 HOH A 21 26 26 HOH HOH . G 7 HOH A 22 27 27 HOH HOH . G 7 HOH A 23 28 28 HOH HOH . G 7 HOH A 24 29 29 HOH HOH . G 7 HOH A 25 30 30 HOH HOH . G 7 HOH A 26 31 31 HOH HOH . G 7 HOH A 27 32 32 HOH HOH . G 7 HOH A 28 33 33 HOH HOH . G 7 HOH A 29 34 34 HOH HOH . G 7 HOH A 30 35 35 HOH HOH . G 7 HOH A 31 36 36 HOH HOH . G 7 HOH A 32 37 37 HOH HOH . G 7 HOH A 33 38 38 HOH HOH . G 7 HOH A 34 39 39 HOH HOH . G 7 HOH A 35 40 40 HOH HOH . G 7 HOH A 36 41 41 HOH HOH . G 7 HOH A 37 42 42 HOH HOH . G 7 HOH A 38 43 43 HOH HOH . G 7 HOH A 39 44 44 HOH HOH . G 7 HOH A 40 45 45 HOH HOH . G 7 HOH A 41 46 46 HOH HOH . G 7 HOH A 42 47 47 HOH HOH . G 7 HOH A 43 48 48 HOH HOH . G 7 HOH A 44 49 49 HOH HOH . G 7 HOH A 45 50 50 HOH HOH . G 7 HOH A 46 51 51 HOH HOH . G 7 HOH A 47 52 52 HOH HOH . G 7 HOH A 48 53 53 HOH HOH . G 7 HOH A 49 54 54 HOH HOH . G 7 HOH A 50 55 55 HOH HOH . G 7 HOH A 51 56 56 HOH HOH . G 7 HOH A 52 57 57 HOH HOH . G 7 HOH A 53 58 58 HOH HOH . G 7 HOH A 54 59 59 HOH HOH . G 7 HOH A 55 60 60 HOH HOH . G 7 HOH A 56 61 61 HOH HOH . G 7 HOH A 57 355 1 HOH HOH . G 7 HOH A 58 356 2 HOH HOH . G 7 HOH A 59 357 3 HOH HOH . G 7 HOH A 60 358 6 HOH HOH . G 7 HOH A 61 359 7 HOH HOH . G 7 HOH A 62 360 62 HOH HOH . G 7 HOH A 63 361 63 HOH HOH . G 7 HOH A 64 362 64 HOH HOH . G 7 HOH A 65 363 65 HOH HOH . G 7 HOH A 66 364 66 HOH HOH . G 7 HOH A 67 365 67 HOH HOH . G 7 HOH A 68 366 68 HOH HOH . G 7 HOH A 69 367 69 HOH HOH . G 7 HOH A 70 368 70 HOH HOH . G 7 HOH A 71 369 71 HOH HOH . G 7 HOH A 72 370 72 HOH HOH . G 7 HOH A 73 371 73 HOH HOH . G 7 HOH A 74 372 74 HOH HOH . G 7 HOH A 75 373 75 HOH HOH . G 7 HOH A 76 374 76 HOH HOH . G 7 HOH A 77 375 77 HOH HOH . G 7 HOH A 78 376 78 HOH HOH . G 7 HOH A 79 377 79 HOH HOH . G 7 HOH A 80 378 80 HOH HOH . G 7 HOH A 81 379 81 HOH HOH . G 7 HOH A 82 380 82 HOH HOH . G 7 HOH A 83 381 83 HOH HOH . G 7 HOH A 84 382 84 HOH HOH . G 7 HOH A 85 383 85 HOH HOH . G 7 HOH A 86 384 86 HOH HOH . G 7 HOH A 87 385 87 HOH HOH . G 7 HOH A 88 386 88 HOH HOH . G 7 HOH A 89 387 89 HOH HOH . G 7 HOH A 90 388 90 HOH HOH . G 7 HOH A 91 389 91 HOH HOH . G 7 HOH A 92 390 92 HOH HOH . G 7 HOH A 93 391 93 HOH HOH . G 7 HOH A 94 392 94 HOH HOH . G 7 HOH A 95 393 95 HOH HOH . G 7 HOH A 96 394 96 HOH HOH . G 7 HOH A 97 395 97 HOH HOH . G 7 HOH A 98 396 98 HOH HOH . G 7 HOH A 99 397 99 HOH HOH . G 7 HOH A 100 398 100 HOH HOH . G 7 HOH A 101 399 101 HOH HOH . G 7 HOH A 102 400 102 HOH HOH . G 7 HOH A 103 401 103 HOH HOH . G 7 HOH A 104 402 104 HOH HOH . G 7 HOH A 105 403 105 HOH HOH . G 7 HOH A 106 404 106 HOH HOH . G 7 HOH A 107 405 107 HOH HOH . G 7 HOH A 108 406 108 HOH HOH . G 7 HOH A 109 407 109 HOH HOH . G 7 HOH A 110 408 110 HOH HOH . G 7 HOH A 111 409 111 HOH HOH . G 7 HOH A 112 410 112 HOH HOH . G 7 HOH A 113 411 113 HOH HOH . G 7 HOH A 114 412 114 HOH HOH . G 7 HOH A 115 413 115 HOH HOH . G 7 HOH A 116 414 116 HOH HOH . G 7 HOH A 117 415 117 HOH HOH . G 7 HOH A 118 416 118 HOH HOH . G 7 HOH A 119 417 119 HOH HOH . G 7 HOH A 120 418 120 HOH HOH . G 7 HOH A 121 419 121 HOH HOH . G 7 HOH A 122 420 122 HOH HOH . G 7 HOH A 123 421 123 HOH HOH . G 7 HOH A 124 422 124 HOH HOH . G 7 HOH A 125 423 125 HOH HOH . G 7 HOH A 126 424 126 HOH HOH . G 7 HOH A 127 425 127 HOH HOH . G 7 HOH A 128 426 128 HOH HOH . G 7 HOH A 129 427 129 HOH HOH . G 7 HOH A 130 428 130 HOH HOH . G 7 HOH A 131 429 131 HOH HOH . G 7 HOH A 132 430 132 HOH HOH . G 7 HOH A 133 431 133 HOH HOH . G 7 HOH A 134 432 134 HOH HOH . G 7 HOH A 135 433 135 HOH HOH . G 7 HOH A 136 434 136 HOH HOH . G 7 HOH A 137 435 137 HOH HOH . G 7 HOH A 138 436 138 HOH HOH . G 7 HOH A 139 437 139 HOH HOH . G 7 HOH A 140 438 140 HOH HOH . G 7 HOH A 141 439 141 HOH HOH . G 7 HOH A 142 440 142 HOH HOH . G 7 HOH A 143 441 143 HOH HOH . G 7 HOH A 144 442 144 HOH HOH . G 7 HOH A 145 443 145 HOH HOH . G 7 HOH A 146 444 146 HOH HOH . G 7 HOH A 147 445 147 HOH HOH . G 7 HOH A 148 446 148 HOH HOH . G 7 HOH A 149 447 149 HOH HOH . G 7 HOH A 150 448 150 HOH HOH . G 7 HOH A 151 449 151 HOH HOH . G 7 HOH A 152 450 152 HOH HOH . G 7 HOH A 153 451 153 HOH HOH . G 7 HOH A 154 452 154 HOH HOH . G 7 HOH A 155 453 155 HOH HOH . G 7 HOH A 156 454 156 HOH HOH . G 7 HOH A 157 455 157 HOH HOH . G 7 HOH A 158 456 158 HOH HOH . G 7 HOH A 159 457 159 HOH HOH . G 7 HOH A 160 458 160 HOH HOH . G 7 HOH A 161 459 161 HOH HOH . G 7 HOH A 162 460 162 HOH HOH . G 7 HOH A 163 461 163 HOH HOH . G 7 HOH A 164 462 164 HOH HOH . G 7 HOH A 165 463 165 HOH HOH . G 7 HOH A 166 464 166 HOH HOH . G 7 HOH A 167 465 167 HOH HOH . G 7 HOH A 168 466 168 HOH HOH . G 7 HOH A 169 467 169 HOH HOH . G 7 HOH A 170 468 170 HOH HOH . G 7 HOH A 171 469 171 HOH HOH . G 7 HOH A 172 470 172 HOH HOH . G 7 HOH A 173 471 173 HOH HOH . G 7 HOH A 174 472 174 HOH HOH . G 7 HOH A 175 473 175 HOH HOH . G 7 HOH A 176 474 176 HOH HOH . G 7 HOH A 177 475 177 HOH HOH . G 7 HOH A 178 476 178 HOH HOH . G 7 HOH A 179 477 179 HOH HOH . G 7 HOH A 180 478 180 HOH HOH . G 7 HOH A 181 479 181 HOH HOH . G 7 HOH A 182 480 182 HOH HOH . G 7 HOH A 183 481 183 HOH HOH . G 7 HOH A 184 482 184 HOH HOH . G 7 HOH A 185 483 185 HOH HOH . G 7 HOH A 186 484 186 HOH HOH . G 7 HOH A 187 485 187 HOH HOH . G 7 HOH A 188 486 188 HOH HOH . G 7 HOH A 189 487 189 HOH HOH . G 7 HOH A 190 488 190 HOH HOH . G 7 HOH A 191 489 191 HOH HOH . G 7 HOH A 192 490 192 HOH HOH . G 7 HOH A 193 491 193 HOH HOH . G 7 HOH A 194 492 194 HOH HOH . G 7 HOH A 195 493 195 HOH HOH . G 7 HOH A 196 494 196 HOH HOH . G 7 HOH A 197 495 197 HOH HOH . G 7 HOH A 198 496 198 HOH HOH . G 7 HOH A 199 497 199 HOH HOH . G 7 HOH A 200 498 200 HOH HOH . G 7 HOH A 201 499 201 HOH HOH . G 7 HOH A 202 500 202 HOH HOH . G 7 HOH A 203 501 203 HOH HOH . G 7 HOH A 204 502 204 HOH HOH . G 7 HOH A 205 503 205 HOH HOH . G 7 HOH A 206 504 206 HOH HOH . G 7 HOH A 207 505 207 HOH HOH . G 7 HOH A 208 506 208 HOH HOH . G 7 HOH A 209 507 209 HOH HOH . G 7 HOH A 210 508 210 HOH HOH . G 7 HOH A 211 509 211 HOH HOH . G 7 HOH A 212 510 212 HOH HOH . G 7 HOH A 213 511 213 HOH HOH . G 7 HOH A 214 512 214 HOH HOH . G 7 HOH A 215 513 215 HOH HOH . G 7 HOH A 216 514 216 HOH HOH . G 7 HOH A 217 515 217 HOH HOH . G 7 HOH A 218 516 218 HOH HOH . G 7 HOH A 219 517 219 HOH HOH . G 7 HOH A 220 518 220 HOH HOH . G 7 HOH A 221 519 221 HOH HOH . G 7 HOH A 222 520 222 HOH HOH . G 7 HOH A 223 521 223 HOH HOH . G 7 HOH A 224 522 224 HOH HOH . G 7 HOH A 225 523 225 HOH HOH . G 7 HOH A 226 524 226 HOH HOH . G 7 HOH A 227 525 227 HOH HOH . G 7 HOH A 228 526 228 HOH HOH . G 7 HOH A 229 527 229 HOH HOH . G 7 HOH A 230 528 230 HOH HOH . G 7 HOH A 231 529 231 HOH HOH . G 7 HOH A 232 530 232 HOH HOH . G 7 HOH A 233 531 233 HOH HOH . G 7 HOH A 234 532 234 HOH HOH . G 7 HOH A 235 533 235 HOH HOH . G 7 HOH A 236 534 236 HOH HOH . G 7 HOH A 237 535 237 HOH HOH . G 7 HOH A 238 536 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -16.28 18.563 6.242 1 39.96 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . D 4 -15.958 18.53 4.854 1 45.47 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . D 4 -17.612 19.293 6.285 1 39.52 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . D 4 -18.066 19.581 4.912 1 36.88 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . D 4 -18.572 18.487 7.15 1 32.32 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . D 4 -18.099 18.093 8.436 1 32.96 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 609 _model_server_stats.encode_time_ms 52 _model_server_stats.element_count 6 #