data_3SXD
#
_model_server_result.job_id            u-DGd2xMhJSCo8SW_AzOBw 
_model_server_result.datetime_utc      '2024-11-07 13:00:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":355}' 
#
_entry.id    3SXD 
#
_exptl.entry_id    3SXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SXD 
_cell.length_a            52.56 
_cell.length_b            149.83 
_cell.length_c            78.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -52.56 0 39.485 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O1A UDP . A UDP 1 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 B O3B UDP . A UDP 1 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 A OD2 ASP 150 A ASP 211 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc4 A OD1 ASP 152 A ASP 213 1_555 E MN MN . A MN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3SXD 
_atom_sites.fract_transf_matrix[1][1]    0.019026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 1 1 UDP UDP . 
C 3 GAL A 1 2 2 GAL GAL . 
D 4 PEG A 1 3 3 PEG PEG . 
E 5 MN A 1 355 1 MN MN . 
F 6 HOH A 1 4 4 HOH HOH . 
F 6 HOH A 2 5 5 HOH HOH . 
F 6 HOH A 3 6 6 HOH HOH . 
F 6 HOH A 4 7 7 HOH HOH . 
F 6 HOH A 5 8 8 HOH HOH . 
F 6 HOH A 6 9 9 HOH HOH . 
F 6 HOH A 7 10 10 HOH HOH . 
F 6 HOH A 8 11 11 HOH HOH . 
F 6 HOH A 9 12 12 HOH HOH . 
F 6 HOH A 10 13 13 HOH HOH . 
F 6 HOH A 11 14 14 HOH HOH . 
F 6 HOH A 12 15 15 HOH HOH . 
F 6 HOH A 13 16 16 HOH HOH . 
F 6 HOH A 14 17 17 HOH HOH . 
F 6 HOH A 15 18 18 HOH HOH . 
F 6 HOH A 16 19 19 HOH HOH . 
F 6 HOH A 17 20 20 HOH HOH . 
F 6 HOH A 18 21 21 HOH HOH . 
F 6 HOH A 19 22 22 HOH HOH . 
F 6 HOH A 20 23 23 HOH HOH . 
F 6 HOH A 21 24 24 HOH HOH . 
F 6 HOH A 22 25 25 HOH HOH . 
F 6 HOH A 23 26 26 HOH HOH . 
F 6 HOH A 24 27 27 HOH HOH . 
F 6 HOH A 25 28 28 HOH HOH . 
F 6 HOH A 26 29 29 HOH HOH . 
F 6 HOH A 27 30 30 HOH HOH . 
F 6 HOH A 28 31 31 HOH HOH . 
F 6 HOH A 29 32 32 HOH HOH . 
F 6 HOH A 30 33 33 HOH HOH . 
F 6 HOH A 31 34 34 HOH HOH . 
F 6 HOH A 32 35 35 HOH HOH . 
F 6 HOH A 33 36 36 HOH HOH . 
F 6 HOH A 34 37 37 HOH HOH . 
F 6 HOH A 35 38 38 HOH HOH . 
F 6 HOH A 36 39 39 HOH HOH . 
F 6 HOH A 37 40 40 HOH HOH . 
F 6 HOH A 38 41 41 HOH HOH . 
F 6 HOH A 39 42 42 HOH HOH . 
F 6 HOH A 40 43 43 HOH HOH . 
F 6 HOH A 41 44 44 HOH HOH . 
F 6 HOH A 42 45 45 HOH HOH . 
F 6 HOH A 43 46 46 HOH HOH . 
F 6 HOH A 44 47 47 HOH HOH . 
F 6 HOH A 45 48 48 HOH HOH . 
F 6 HOH A 46 49 49 HOH HOH . 
F 6 HOH A 47 50 50 HOH HOH . 
F 6 HOH A 48 51 51 HOH HOH . 
F 6 HOH A 49 52 52 HOH HOH . 
F 6 HOH A 50 53 53 HOH HOH . 
F 6 HOH A 51 54 54 HOH HOH . 
F 6 HOH A 52 55 55 HOH HOH . 
F 6 HOH A 53 56 56 HOH HOH . 
F 6 HOH A 54 57 57 HOH HOH . 
F 6 HOH A 55 58 58 HOH HOH . 
F 6 HOH A 56 59 59 HOH HOH . 
F 6 HOH A 57 60 60 HOH HOH . 
F 6 HOH A 58 61 61 HOH HOH . 
F 6 HOH A 59 356 1 HOH HOH . 
F 6 HOH A 60 357 2 HOH HOH . 
F 6 HOH A 61 358 3 HOH HOH . 
F 6 HOH A 62 359 62 HOH HOH . 
F 6 HOH A 63 360 63 HOH HOH . 
F 6 HOH A 64 361 64 HOH HOH . 
F 6 HOH A 65 362 65 HOH HOH . 
F 6 HOH A 66 363 66 HOH HOH . 
F 6 HOH A 67 364 67 HOH HOH . 
F 6 HOH A 68 365 68 HOH HOH . 
F 6 HOH A 69 366 69 HOH HOH . 
F 6 HOH A 70 367 70 HOH HOH . 
F 6 HOH A 71 368 71 HOH HOH . 
F 6 HOH A 72 369 72 HOH HOH . 
F 6 HOH A 73 370 73 HOH HOH . 
F 6 HOH A 74 371 74 HOH HOH . 
F 6 HOH A 75 372 75 HOH HOH . 
F 6 HOH A 76 373 76 HOH HOH . 
F 6 HOH A 77 374 77 HOH HOH . 
F 6 HOH A 78 375 78 HOH HOH . 
F 6 HOH A 79 376 79 HOH HOH . 
F 6 HOH A 80 377 80 HOH HOH . 
F 6 HOH A 81 378 81 HOH HOH . 
F 6 HOH A 82 379 82 HOH HOH . 
F 6 HOH A 83 380 83 HOH HOH . 
F 6 HOH A 84 381 84 HOH HOH . 
F 6 HOH A 85 382 85 HOH HOH . 
F 6 HOH A 86 383 86 HOH HOH . 
F 6 HOH A 87 384 87 HOH HOH . 
F 6 HOH A 88 385 88 HOH HOH . 
F 6 HOH A 89 386 89 HOH HOH . 
F 6 HOH A 90 387 90 HOH HOH . 
F 6 HOH A 91 388 91 HOH HOH . 
F 6 HOH A 92 389 92 HOH HOH . 
F 6 HOH A 93 390 93 HOH HOH . 
F 6 HOH A 94 391 94 HOH HOH . 
F 6 HOH A 95 392 95 HOH HOH . 
F 6 HOH A 96 393 96 HOH HOH . 
F 6 HOH A 97 394 97 HOH HOH . 
F 6 HOH A 98 395 98 HOH HOH . 
F 6 HOH A 99 396 99 HOH HOH . 
F 6 HOH A 100 397 100 HOH HOH . 
F 6 HOH A 101 398 101 HOH HOH . 
F 6 HOH A 102 399 102 HOH HOH . 
F 6 HOH A 103 400 103 HOH HOH . 
F 6 HOH A 104 401 104 HOH HOH . 
F 6 HOH A 105 402 105 HOH HOH . 
F 6 HOH A 106 403 106 HOH HOH . 
F 6 HOH A 107 404 107 HOH HOH . 
F 6 HOH A 108 405 108 HOH HOH . 
F 6 HOH A 109 406 109 HOH HOH . 
F 6 HOH A 110 407 110 HOH HOH . 
F 6 HOH A 111 408 111 HOH HOH . 
F 6 HOH A 112 409 112 HOH HOH . 
F 6 HOH A 113 410 113 HOH HOH . 
F 6 HOH A 114 411 114 HOH HOH . 
F 6 HOH A 115 412 115 HOH HOH . 
F 6 HOH A 116 413 116 HOH HOH . 
F 6 HOH A 117 414 117 HOH HOH . 
F 6 HOH A 118 415 118 HOH HOH . 
F 6 HOH A 119 416 119 HOH HOH . 
F 6 HOH A 120 417 120 HOH HOH . 
F 6 HOH A 121 418 121 HOH HOH . 
F 6 HOH A 122 419 122 HOH HOH . 
F 6 HOH A 123 420 123 HOH HOH . 
F 6 HOH A 124 421 124 HOH HOH . 
F 6 HOH A 125 422 125 HOH HOH . 
F 6 HOH A 126 423 126 HOH HOH . 
F 6 HOH A 127 424 127 HOH HOH . 
F 6 HOH A 128 425 128 HOH HOH . 
F 6 HOH A 129 426 129 HOH HOH . 
F 6 HOH A 130 427 130 HOH HOH . 
F 6 HOH A 131 428 131 HOH HOH . 
F 6 HOH A 132 429 132 HOH HOH . 
F 6 HOH A 133 430 133 HOH HOH . 
F 6 HOH A 134 431 134 HOH HOH . 
F 6 HOH A 135 432 135 HOH HOH . 
F 6 HOH A 136 433 136 HOH HOH . 
F 6 HOH A 137 434 137 HOH HOH . 
F 6 HOH A 138 435 138 HOH HOH . 
F 6 HOH A 139 436 139 HOH HOH . 
F 6 HOH A 140 437 140 HOH HOH . 
F 6 HOH A 141 438 141 HOH HOH . 
F 6 HOH A 142 439 142 HOH HOH . 
F 6 HOH A 143 440 143 HOH HOH . 
F 6 HOH A 144 441 144 HOH HOH . 
F 6 HOH A 145 442 145 HOH HOH . 
F 6 HOH A 146 443 146 HOH HOH . 
F 6 HOH A 147 444 147 HOH HOH . 
F 6 HOH A 148 445 148 HOH HOH . 
F 6 HOH A 149 446 149 HOH HOH . 
F 6 HOH A 150 447 150 HOH HOH . 
F 6 HOH A 151 448 151 HOH HOH . 
F 6 HOH A 152 449 152 HOH HOH . 
F 6 HOH A 153 450 153 HOH HOH . 
F 6 HOH A 154 451 154 HOH HOH . 
F 6 HOH A 155 452 155 HOH HOH . 
F 6 HOH A 156 453 156 HOH HOH . 
F 6 HOH A 157 454 157 HOH HOH . 
F 6 HOH A 158 455 158 HOH HOH . 
F 6 HOH A 159 456 159 HOH HOH . 
F 6 HOH A 160 457 160 HOH HOH . 
F 6 HOH A 161 458 161 HOH HOH . 
F 6 HOH A 162 459 162 HOH HOH . 
F 6 HOH A 163 460 163 HOH HOH . 
F 6 HOH A 164 461 164 HOH HOH . 
F 6 HOH A 165 462 165 HOH HOH . 
F 6 HOH A 166 463 166 HOH HOH . 
F 6 HOH A 167 464 167 HOH HOH . 
F 6 HOH A 168 465 168 HOH HOH . 
F 6 HOH A 169 466 169 HOH HOH . 
F 6 HOH A 170 467 170 HOH HOH . 
F 6 HOH A 171 468 171 HOH HOH . 
F 6 HOH A 172 469 172 HOH HOH . 
F 6 HOH A 173 470 173 HOH HOH . 
F 6 HOH A 174 471 174 HOH HOH . 
F 6 HOH A 175 472 175 HOH HOH . 
F 6 HOH A 176 473 176 HOH HOH . 
F 6 HOH A 177 474 177 HOH HOH . 
F 6 HOH A 178 475 178 HOH HOH . 
F 6 HOH A 179 476 179 HOH HOH . 
F 6 HOH A 180 477 180 HOH HOH . 
F 6 HOH A 181 478 181 HOH HOH . 
F 6 HOH A 182 479 182 HOH HOH . 
F 6 HOH A 183 480 183 HOH HOH . 
F 6 HOH A 184 481 184 HOH HOH . 
F 6 HOH A 185 482 185 HOH HOH . 
F 6 HOH A 186 483 186 HOH HOH . 
F 6 HOH A 187 484 187 HOH HOH . 
F 6 HOH A 188 485 188 HOH HOH . 
F 6 HOH A 189 486 189 HOH HOH . 
F 6 HOH A 190 487 190 HOH HOH . 
F 6 HOH A 191 488 191 HOH HOH . 
F 6 HOH A 192 489 192 HOH HOH . 
F 6 HOH A 193 490 193 HOH HOH . 
F 6 HOH A 194 491 194 HOH HOH . 
F 6 HOH A 195 492 195 HOH HOH . 
F 6 HOH A 196 493 196 HOH HOH . 
F 6 HOH A 197 494 197 HOH HOH . 
F 6 HOH A 198 495 198 HOH HOH . 
F 6 HOH A 199 496 199 HOH HOH . 
F 6 HOH A 200 497 200 HOH HOH . 
F 6 HOH A 201 498 201 HOH HOH . 
F 6 HOH A 202 499 202 HOH HOH . 
F 6 HOH A 203 500 203 HOH HOH . 
F 6 HOH A 204 501 204 HOH HOH . 
F 6 HOH A 205 502 205 HOH HOH . 
F 6 HOH A 206 503 206 HOH HOH . 
F 6 HOH A 207 504 207 HOH HOH . 
F 6 HOH A 208 505 208 HOH HOH . 
F 6 HOH A 209 506 209 HOH HOH . 
F 6 HOH A 210 507 210 HOH HOH . 
F 6 HOH A 211 508 211 HOH HOH . 
F 6 HOH A 212 509 212 HOH HOH . 
F 6 HOH A 213 510 213 HOH HOH . 
F 6 HOH A 214 511 214 HOH HOH . 
F 6 HOH A 215 512 215 HOH HOH . 
F 6 HOH A 216 513 216 HOH HOH . 
F 6 HOH A 217 514 217 HOH HOH . 
F 6 HOH A 218 515 218 HOH HOH . 
F 6 HOH A 219 516 219 HOH HOH . 
F 6 HOH A 220 517 220 HOH HOH . 
F 6 HOH A 221 518 221 HOH HOH . 
F 6 HOH A 222 519 222 HOH HOH . 
F 6 HOH A 223 520 223 HOH HOH . 
F 6 HOH A 224 521 224 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -11.371 
_atom_site.Cartn_y               -16.97 
_atom_site.Cartn_z               -4.304 
_atom_site.occupancy             0.4 
_atom_site.B_iso_or_equiv        25.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           355 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#