data_3SXF # _model_server_result.job_id 8deuEk4-Kxp66pe4OpGELA _model_server_result.datetime_utc '2024-10-20 00:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3SXF # _exptl.entry_id 3SXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-ethoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.18 _cell.angle_gamma 90 _cell.entry_id 3SXF _cell.length_a 47.446 _cell.length_b 72.238 _cell.length_c 65.815 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 N5 O' _chem_comp.formula_weight 347.414 _chem_comp.id BK5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-ethoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RM-1-89 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 BK5 doub 70 n y C2 N1 BK5 sing 71 n y N3 C2 BK5 doub 72 n y N3 C4 BK5 sing 73 n y C4 NAZ BK5 sing 74 n y C4 C5 BK5 doub 75 n y C5 C6 BK5 sing 76 n y C5 CAT BK5 sing 77 n y C6 NAD BK5 sing 78 n n CAC CAY BK5 sing 79 n n CAF CAH BK5 doub 80 n y CAF CAR BK5 sing 81 n y CAG CAE BK5 doub 82 n y CAH CAU BK5 sing 83 n y CAJ CAQ BK5 doub 84 n y CAK CAV BK5 sing 85 n y CAL CAA BK5 sing 86 n n CAL OAP BK5 sing 87 n n NAO CAT BK5 doub 88 n y CAQ CAE BK5 sing 89 n y CAQ OAP BK5 sing 90 n n CAR CAK BK5 doub 91 n y CAT CAR BK5 sing 92 n n CAU CAJ BK5 sing 93 n y CAU CAV BK5 doub 94 n y CAV CAG BK5 sing 95 n y CAY CAB BK5 sing 96 n n CAY NAZ BK5 sing 97 n n NAZ NAO BK5 sing 98 n y C2 H2 BK5 sing 99 n n CAA HAA BK5 sing 100 n n CAA HAAA BK5 sing 101 n n CAA HAAB BK5 sing 102 n n CAB HAB BK5 sing 103 n n CAB HABA BK5 sing 104 n n CAB HABB BK5 sing 105 n n CAC HAC BK5 sing 106 n n CAC HACA BK5 sing 107 n n CAC HACB BK5 sing 108 n n NAD HNAD BK5 sing 109 n n NAD HNAA BK5 sing 110 n n CAE HAE BK5 sing 111 n n CAF HAF BK5 sing 112 n n CAG HAG BK5 sing 113 n n CAH HAH BK5 sing 114 n n CAJ HAJ BK5 sing 115 n n CAK HAK BK5 sing 116 n n CAL HAL BK5 sing 117 n n CAL HALA BK5 sing 118 n n CAY HAY BK5 sing 119 n n # _atom_sites.entry_id 3SXF _atom_sites.fract_transf_matrix[1][1] 0.021077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BK5 A 1 701 701 BK5 BK5 . C 3 DMS A 1 711 711 DMS DMS . D 4 EDO A 1 712 712 EDO EDO . E 5 HOH A 1 801 801 HOH HOH . E 5 HOH A 2 802 802 HOH HOH . E 5 HOH A 3 803 803 HOH HOH . E 5 HOH A 4 804 804 HOH HOH . E 5 HOH A 5 805 805 HOH HOH . E 5 HOH A 6 806 806 HOH HOH . E 5 HOH A 7 807 807 HOH HOH . E 5 HOH A 8 808 808 HOH HOH . E 5 HOH A 9 809 809 HOH HOH . E 5 HOH A 10 810 810 HOH HOH . E 5 HOH A 11 811 811 HOH HOH . E 5 HOH A 12 812 812 HOH HOH . E 5 HOH A 13 813 813 HOH HOH . E 5 HOH A 14 814 814 HOH HOH . E 5 HOH A 15 815 815 HOH HOH . E 5 HOH A 16 816 816 HOH HOH . E 5 HOH A 17 817 817 HOH HOH . E 5 HOH A 18 818 818 HOH HOH . E 5 HOH A 19 819 819 HOH HOH . E 5 HOH A 20 820 820 HOH HOH . E 5 HOH A 21 821 821 HOH HOH . E 5 HOH A 22 822 822 HOH HOH . E 5 HOH A 23 823 823 HOH HOH . E 5 HOH A 24 824 824 HOH HOH . E 5 HOH A 25 825 825 HOH HOH . E 5 HOH A 26 826 826 HOH HOH . E 5 HOH A 27 827 827 HOH HOH . E 5 HOH A 28 828 828 HOH HOH . E 5 HOH A 29 829 829 HOH HOH . E 5 HOH A 30 830 830 HOH HOH . E 5 HOH A 31 831 831 HOH HOH . E 5 HOH A 32 832 832 HOH HOH . E 5 HOH A 33 833 833 HOH HOH . E 5 HOH A 34 834 834 HOH HOH . E 5 HOH A 35 835 835 HOH HOH . E 5 HOH A 36 836 836 HOH HOH . E 5 HOH A 37 837 837 HOH HOH . E 5 HOH A 38 838 838 HOH HOH . E 5 HOH A 39 839 839 HOH HOH . E 5 HOH A 40 840 840 HOH HOH . E 5 HOH A 41 841 841 HOH HOH . E 5 HOH A 42 842 842 HOH HOH . E 5 HOH A 43 843 843 HOH HOH . E 5 HOH A 44 844 844 HOH HOH . E 5 HOH A 45 845 845 HOH HOH . E 5 HOH A 46 846 846 HOH HOH . E 5 HOH A 47 847 847 HOH HOH . E 5 HOH A 48 848 848 HOH HOH . E 5 HOH A 49 849 849 HOH HOH . E 5 HOH A 50 850 850 HOH HOH . E 5 HOH A 51 851 851 HOH HOH . E 5 HOH A 52 852 852 HOH HOH . E 5 HOH A 53 853 853 HOH HOH . E 5 HOH A 54 854 854 HOH HOH . E 5 HOH A 55 855 855 HOH HOH . E 5 HOH A 56 856 856 HOH HOH . E 5 HOH A 57 857 857 HOH HOH . E 5 HOH A 58 858 858 HOH HOH . E 5 HOH A 59 859 859 HOH HOH . E 5 HOH A 60 860 860 HOH HOH . E 5 HOH A 61 861 861 HOH HOH . E 5 HOH A 62 862 862 HOH HOH . E 5 HOH A 63 863 863 HOH HOH . E 5 HOH A 64 864 864 HOH HOH . E 5 HOH A 65 865 865 HOH HOH . E 5 HOH A 66 866 866 HOH HOH . E 5 HOH A 67 867 867 HOH HOH . E 5 HOH A 68 868 868 HOH HOH . E 5 HOH A 69 869 869 HOH HOH . E 5 HOH A 70 870 870 HOH HOH . E 5 HOH A 71 871 871 HOH HOH . E 5 HOH A 72 872 872 HOH HOH . E 5 HOH A 73 873 873 HOH HOH . E 5 HOH A 74 874 874 HOH HOH . E 5 HOH A 75 875 875 HOH HOH . E 5 HOH A 76 876 876 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK5 . . . B 2 21.372 12.289 63.415 1 33.45 ? N1 BK5 701 A 1 HETATM 2 C C2 BK5 . . . B 2 22.537 12.891 63.174 1 34.8 ? C2 BK5 701 A 1 HETATM 3 N N3 BK5 . . . B 2 22.63 14.214 63.134 1 37.12 ? N3 BK5 701 A 1 HETATM 4 C C4 BK5 . . . B 2 21.54 14.982 63.322 1 34.13 ? C4 BK5 701 A 1 HETATM 5 C C5 BK5 . . . B 2 20.308 14.4 63.581 1 33.63 ? C5 BK5 701 A 1 HETATM 6 C C6 BK5 . . . B 2 20.248 12.996 63.629 1 33.67 ? C6 BK5 701 A 1 HETATM 7 C CAA BK5 . . . B 2 9.74 14.735 65.346 1 30.48 ? CAA BK5 701 A 1 HETATM 8 C CAB BK5 . . . B 2 22.213 18.568 63.835 1 36.37 ? CAB BK5 701 A 1 HETATM 9 C CAC BK5 . . . B 2 22.573 17.496 61.579 1 38.43 ? CAC BK5 701 A 1 HETATM 10 N NAD BK5 . . . B 2 19.12 12.323 63.863 1 34.44 ? NAD BK5 701 A 1 HETATM 11 C CAE BK5 . . . B 2 14.27 13.995 66.636 1 29.84 ? CAE BK5 701 A 1 HETATM 12 C CAF BK5 . . . B 2 17.207 16.224 63.232 1 31.11 ? CAF BK5 701 A 1 HETATM 13 C CAG BK5 . . . B 2 15.644 13.998 66.39 1 29.03 ? CAG BK5 701 A 1 HETATM 14 C CAH BK5 . . . B 2 15.835 16.229 63.48 1 28.36 ? CAH BK5 701 A 1 HETATM 15 C CAJ BK5 . . . B 2 13.938 15.491 64.776 1 28.66 ? CAJ BK5 701 A 1 HETATM 16 C CAK BK5 . . . B 2 17.549 14.728 65.08 1 31.28 ? CAK BK5 701 A 1 HETATM 17 C CAL BK5 . . . B 2 11.211 14.939 64.95 1 33.01 ? CAL BK5 701 A 1 HETATM 18 N NAO BK5 . . . B 2 20.178 16.611 63.567 1 34.52 ? NAO BK5 701 A 1 HETATM 19 O OAP BK5 . . . B 2 12.079 14.73 66.094 1 31.27 ? OAP BK5 701 A 1 HETATM 20 C CAQ BK5 . . . B 2 13.413 14.74 65.823 1 29.17 ? CAQ BK5 701 A 1 HETATM 21 C CAR BK5 . . . B 2 18.077 15.46 64.014 1 30.57 ? CAR BK5 701 A 1 HETATM 22 C CAT BK5 . . . B 2 19.446 15.499 63.738 1 33.3 ? CAT BK5 701 A 1 HETATM 23 C CAU BK5 . . . B 2 15.313 15.484 64.53 1 30.04 ? CAU BK5 701 A 1 HETATM 24 C CAV BK5 . . . B 2 16.172 14.739 65.34 1 29.22 ? CAV BK5 701 A 1 HETATM 25 C CAY BK5 . . . B 2 22.454 17.254 63.088 1 37.42 ? CAY BK5 701 A 1 HETATM 26 N NAZ BK5 . . . B 2 21.355 16.299 63.33 1 36.36 ? NAZ BK5 701 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #