data_3SY4 # _model_server_result.job_id C4dsEl4QPsmtu4cyey-D7w _model_server_result.datetime_utc '2024-11-13 03:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3SY4 # _exptl.entry_id 3SY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 34.081 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROSULFURIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SY4 _cell.length_a 149.766 _cell.length_b 149.766 _cell.length_c 81.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 27.243333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 359 A CYS 356 1_555 G S H2S . A H2S 505 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.151 ? covale ? covale2 A SG CYS 359 A CYS 356 1_555 G S H2S . A H2S 505 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.145 ? covale ? covale3 A SG CYS 163 A CYS 160 1_555 F S H2S . A H2S 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'H2 S' _chem_comp.formula_weight 34.081 _chem_comp.id H2S _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROSULFURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROGEN SULFIDE' # _atom_sites.entry_id 3SY4 _atom_sites.fract_transf_matrix[1][1] 0.006677 _atom_sites.fract_transf_matrix[1][2] 0.003855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 LMT A 1 501 501 LMT LMT . D 4 H2S A 1 502 502 H2S H2S . E 4 H2S A 1 503 503 H2S H2S . F 4 H2S A 1 504 504 H2S H2S . G 4 H2S A 1 505 505 H2S H2S . H 4 H2S A 1 506 506 H2S H2S . I 5 SO4 A 1 507 507 SO4 SO4 . J 6 HOH A 1 508 508 HOH HOH . J 6 HOH A 2 509 509 HOH HOH . J 6 HOH A 3 510 510 HOH HOH . J 6 HOH A 4 511 511 HOH HOH . J 6 HOH A 5 512 512 HOH HOH . J 6 HOH A 6 513 513 HOH HOH . J 6 HOH A 7 514 514 HOH HOH . J 6 HOH A 8 515 515 HOH HOH . J 6 HOH A 9 516 516 HOH HOH . J 6 HOH A 10 517 517 HOH HOH . J 6 HOH A 11 518 518 HOH HOH . J 6 HOH A 12 519 519 HOH HOH . J 6 HOH A 13 520 520 HOH HOH . J 6 HOH A 14 521 521 HOH HOH . J 6 HOH A 15 522 522 HOH HOH . J 6 HOH A 16 523 523 HOH HOH . J 6 HOH A 17 524 524 HOH HOH . J 6 HOH A 18 525 525 HOH HOH . J 6 HOH A 19 526 526 HOH HOH . J 6 HOH A 20 527 527 HOH HOH . J 6 HOH A 21 528 528 HOH HOH . J 6 HOH A 22 529 529 HOH HOH . J 6 HOH A 23 530 530 HOH HOH . J 6 HOH A 24 531 531 HOH HOH . J 6 HOH A 25 532 532 HOH HOH . J 6 HOH A 26 533 533 HOH HOH . J 6 HOH A 27 534 534 HOH HOH . J 6 HOH A 28 535 535 HOH HOH . J 6 HOH A 29 536 536 HOH HOH . J 6 HOH A 30 537 537 HOH HOH . J 6 HOH A 31 538 538 HOH HOH . J 6 HOH A 32 539 539 HOH HOH . J 6 HOH A 33 540 540 HOH HOH . J 6 HOH A 34 541 541 HOH HOH . J 6 HOH A 35 542 542 HOH HOH . J 6 HOH A 36 543 543 HOH HOH . J 6 HOH A 37 544 544 HOH HOH . J 6 HOH A 38 545 545 HOH HOH . J 6 HOH A 39 546 546 HOH HOH . J 6 HOH A 40 547 547 HOH HOH . J 6 HOH A 41 548 548 HOH HOH . J 6 HOH A 42 549 549 HOH HOH . J 6 HOH A 43 550 550 HOH HOH . J 6 HOH A 44 551 551 HOH HOH . J 6 HOH A 45 552 552 HOH HOH . J 6 HOH A 46 553 553 HOH HOH . J 6 HOH A 47 554 554 HOH HOH . J 6 HOH A 48 555 555 HOH HOH . J 6 HOH A 49 556 556 HOH HOH . J 6 HOH A 50 557 557 HOH HOH . J 6 HOH A 51 558 558 HOH HOH . J 6 HOH A 52 559 559 HOH HOH . J 6 HOH A 53 560 560 HOH HOH . J 6 HOH A 54 561 561 HOH HOH . J 6 HOH A 55 562 562 HOH HOH . J 6 HOH A 56 563 563 HOH HOH . J 6 HOH A 57 564 564 HOH HOH . J 6 HOH A 58 565 565 HOH HOH . J 6 HOH A 59 566 566 HOH HOH . J 6 HOH A 60 567 567 HOH HOH . J 6 HOH A 61 568 568 HOH HOH . J 6 HOH A 62 569 569 HOH HOH . J 6 HOH A 63 570 570 HOH HOH . J 6 HOH A 64 571 571 HOH HOH . J 6 HOH A 65 572 572 HOH HOH . J 6 HOH A 66 573 573 HOH HOH . J 6 HOH A 67 574 574 HOH HOH . J 6 HOH A 68 575 575 HOH HOH . J 6 HOH A 69 576 576 HOH HOH . J 6 HOH A 70 577 577 HOH HOH . J 6 HOH A 71 578 578 HOH HOH . J 6 HOH A 72 579 579 HOH HOH . J 6 HOH A 73 580 580 HOH HOH . J 6 HOH A 74 581 581 HOH HOH . J 6 HOH A 75 582 582 HOH HOH . J 6 HOH A 76 583 583 HOH HOH . J 6 HOH A 77 584 584 HOH HOH . J 6 HOH A 78 585 585 HOH HOH . J 6 HOH A 79 586 586 HOH HOH . J 6 HOH A 80 587 587 HOH HOH . J 6 HOH A 81 588 588 HOH HOH . J 6 HOH A 82 589 589 HOH HOH . J 6 HOH A 83 590 590 HOH HOH . J 6 HOH A 84 591 591 HOH HOH . J 6 HOH A 85 592 592 HOH HOH . J 6 HOH A 86 593 593 HOH HOH . J 6 HOH A 87 594 594 HOH HOH . J 6 HOH A 88 595 595 HOH HOH . J 6 HOH A 89 596 596 HOH HOH . J 6 HOH A 90 597 597 HOH HOH . J 6 HOH A 91 598 598 HOH HOH . J 6 HOH A 92 599 599 HOH HOH . J 6 HOH A 93 600 600 HOH HOH . J 6 HOH A 94 601 601 HOH HOH . J 6 HOH A 95 602 602 HOH HOH . J 6 HOH A 96 603 603 HOH HOH . J 6 HOH A 97 604 604 HOH HOH . J 6 HOH A 98 605 605 HOH HOH . J 6 HOH A 99 606 606 HOH HOH . J 6 HOH A 100 607 607 HOH HOH . J 6 HOH A 101 608 608 HOH HOH . J 6 HOH A 102 609 609 HOH HOH . J 6 HOH A 103 610 610 HOH HOH . J 6 HOH A 104 611 611 HOH HOH . J 6 HOH A 105 612 612 HOH HOH . J 6 HOH A 106 613 613 HOH HOH . J 6 HOH A 107 614 614 HOH HOH . J 6 HOH A 108 615 615 HOH HOH . J 6 HOH A 109 616 616 HOH HOH . J 6 HOH A 110 617 617 HOH HOH . J 6 HOH A 111 618 618 HOH HOH . J 6 HOH A 112 619 619 HOH HOH . J 6 HOH A 113 620 620 HOH HOH . J 6 HOH A 114 621 621 HOH HOH . J 6 HOH A 115 622 622 HOH HOH . J 6 HOH A 116 623 623 HOH HOH . J 6 HOH A 117 624 624 HOH HOH . J 6 HOH A 118 625 625 HOH HOH . J 6 HOH A 119 626 626 HOH HOH . J 6 HOH A 120 627 627 HOH HOH . J 6 HOH A 121 628 628 HOH HOH . J 6 HOH A 122 629 629 HOH HOH . J 6 HOH A 123 630 630 HOH HOH . J 6 HOH A 124 631 631 HOH HOH . J 6 HOH A 125 632 632 HOH HOH . J 6 HOH A 126 633 633 HOH HOH . J 6 HOH A 127 634 634 HOH HOH . J 6 HOH A 128 635 635 HOH HOH . J 6 HOH A 129 636 636 HOH HOH . J 6 HOH A 130 637 637 HOH HOH . J 6 HOH A 131 638 638 HOH HOH . J 6 HOH A 132 639 639 HOH HOH . J 6 HOH A 133 640 640 HOH HOH . J 6 HOH A 134 641 641 HOH HOH . J 6 HOH A 135 642 642 HOH HOH . J 6 HOH A 136 643 643 HOH HOH . J 6 HOH A 137 644 644 HOH HOH . J 6 HOH A 138 645 645 HOH HOH . J 6 HOH A 139 646 646 HOH HOH . J 6 HOH A 140 647 647 HOH HOH . J 6 HOH A 141 648 648 HOH HOH . J 6 HOH A 142 649 649 HOH HOH . J 6 HOH A 143 650 650 HOH HOH . J 6 HOH A 144 651 651 HOH HOH . J 6 HOH A 145 652 652 HOH HOH . J 6 HOH A 146 653 653 HOH HOH . J 6 HOH A 147 654 654 HOH HOH . J 6 HOH A 148 655 655 HOH HOH . J 6 HOH A 149 656 656 HOH HOH . J 6 HOH A 150 657 657 HOH HOH . J 6 HOH A 151 658 658 HOH HOH . J 6 HOH A 152 659 659 HOH HOH . J 6 HOH A 153 660 660 HOH HOH . J 6 HOH A 154 661 661 HOH HOH . J 6 HOH A 155 662 662 HOH HOH . J 6 HOH A 156 663 663 HOH HOH . J 6 HOH A 157 664 664 HOH HOH . J 6 HOH A 158 665 665 HOH HOH . J 6 HOH A 159 666 666 HOH HOH . J 6 HOH A 160 667 667 HOH HOH . J 6 HOH A 161 668 668 HOH HOH . J 6 HOH A 162 669 669 HOH HOH . J 6 HOH A 163 670 670 HOH HOH . J 6 HOH A 164 671 671 HOH HOH . J 6 HOH A 165 672 672 HOH HOH . J 6 HOH A 166 673 673 HOH HOH . J 6 HOH A 167 674 674 HOH HOH . J 6 HOH A 168 675 675 HOH HOH . J 6 HOH A 169 676 676 HOH HOH . J 6 HOH A 170 677 677 HOH HOH . J 6 HOH A 171 678 678 HOH HOH . J 6 HOH A 172 679 679 HOH HOH . J 6 HOH A 173 680 680 HOH HOH . J 6 HOH A 174 681 681 HOH HOH . J 6 HOH A 175 682 682 HOH HOH . J 6 HOH A 176 683 683 HOH HOH . J 6 HOH A 177 684 684 HOH HOH . J 6 HOH A 178 685 685 HOH HOH . J 6 HOH A 179 686 686 HOH HOH . J 6 HOH A 180 687 687 HOH HOH . J 6 HOH A 181 688 688 HOH HOH . J 6 HOH A 182 689 689 HOH HOH . J 6 HOH A 183 690 690 HOH HOH . J 6 HOH A 184 691 691 HOH HOH . J 6 HOH A 185 692 692 HOH HOH . J 6 HOH A 186 693 693 HOH HOH . J 6 HOH A 187 694 694 HOH HOH . J 6 HOH A 188 695 695 HOH HOH . J 6 HOH A 189 696 696 HOH HOH . J 6 HOH A 190 697 697 HOH HOH . J 6 HOH A 191 698 698 HOH HOH . J 6 HOH A 192 699 699 HOH HOH . J 6 HOH A 193 700 700 HOH HOH . J 6 HOH A 194 701 701 HOH HOH . J 6 HOH A 195 702 702 HOH HOH . J 6 HOH A 196 703 703 HOH HOH . J 6 HOH A 197 704 704 HOH HOH . J 6 HOH A 198 705 705 HOH HOH . J 6 HOH A 199 706 706 HOH HOH . J 6 HOH A 200 707 707 HOH HOH . J 6 HOH A 201 708 708 HOH HOH . J 6 HOH A 202 709 709 HOH HOH . J 6 HOH A 203 710 710 HOH HOH . J 6 HOH A 204 711 711 HOH HOH . J 6 HOH A 205 712 712 HOH HOH . J 6 HOH A 206 713 713 HOH HOH . J 6 HOH A 207 714 714 HOH HOH . J 6 HOH A 208 715 715 HOH HOH . J 6 HOH A 209 716 716 HOH HOH . J 6 HOH A 210 717 717 HOH HOH . J 6 HOH A 211 718 718 HOH HOH . J 6 HOH A 212 719 719 HOH HOH . J 6 HOH A 213 720 720 HOH HOH . J 6 HOH A 214 721 721 HOH HOH . J 6 HOH A 215 722 722 HOH HOH . J 6 HOH A 216 723 723 HOH HOH . J 6 HOH A 217 724 724 HOH HOH . J 6 HOH A 218 725 725 HOH HOH . J 6 HOH A 219 726 726 HOH HOH . J 6 HOH A 220 727 727 HOH HOH . J 6 HOH A 221 728 728 HOH HOH . J 6 HOH A 222 729 729 HOH HOH . J 6 HOH A 223 730 730 HOH HOH . J 6 HOH A 224 731 731 HOH HOH . J 6 HOH A 225 732 732 HOH HOH . J 6 HOH A 226 733 733 HOH HOH . J 6 HOH A 227 734 734 HOH HOH . J 6 HOH A 228 735 735 HOH HOH . J 6 HOH A 229 736 736 HOH HOH . J 6 HOH A 230 737 737 HOH HOH . J 6 HOH A 231 738 738 HOH HOH . J 6 HOH A 232 739 739 HOH HOH . J 6 HOH A 233 740 740 HOH HOH . J 6 HOH A 234 741 741 HOH HOH . J 6 HOH A 235 742 742 HOH HOH . J 6 HOH A 236 743 743 HOH HOH . J 6 HOH A 237 744 744 HOH HOH . J 6 HOH A 238 745 745 HOH HOH . J 6 HOH A 239 746 746 HOH HOH . J 6 HOH A 240 747 747 HOH HOH . J 6 HOH A 241 748 748 HOH HOH . J 6 HOH A 242 749 749 HOH HOH . J 6 HOH A 243 750 750 HOH HOH . J 6 HOH A 244 751 751 HOH HOH . J 6 HOH A 245 752 752 HOH HOH . J 6 HOH A 246 753 753 HOH HOH . J 6 HOH A 247 754 754 HOH HOH . J 6 HOH A 248 755 755 HOH HOH . J 6 HOH A 249 756 756 HOH HOH . J 6 HOH A 250 757 757 HOH HOH . J 6 HOH A 251 758 758 HOH HOH . J 6 HOH A 252 759 759 HOH HOH . J 6 HOH A 253 760 760 HOH HOH . J 6 HOH A 254 761 761 HOH HOH . J 6 HOH A 255 762 762 HOH HOH . J 6 HOH A 256 763 763 HOH HOH . J 6 HOH A 257 764 764 HOH HOH . J 6 HOH A 258 765 765 HOH HOH . J 6 HOH A 259 766 766 HOH HOH . J 6 HOH A 260 767 767 HOH HOH . J 6 HOH A 261 768 768 HOH HOH . J 6 HOH A 262 769 769 HOH HOH . J 6 HOH A 263 770 770 HOH HOH . J 6 HOH A 264 771 771 HOH HOH . J 6 HOH A 265 772 772 HOH HOH . J 6 HOH A 266 773 773 HOH HOH . J 6 HOH A 267 774 774 HOH HOH . J 6 HOH A 268 775 775 HOH HOH . J 6 HOH A 269 776 776 HOH HOH . J 6 HOH A 270 777 777 HOH HOH . J 6 HOH A 271 778 778 HOH HOH . J 6 HOH A 272 779 779 HOH HOH . J 6 HOH A 273 780 780 HOH HOH . J 6 HOH A 274 781 781 HOH HOH . J 6 HOH A 275 782 782 HOH HOH . J 6 HOH A 276 783 783 HOH HOH . J 6 HOH A 277 784 784 HOH HOH . J 6 HOH A 278 785 785 HOH HOH . J 6 HOH A 279 786 786 HOH HOH . J 6 HOH A 280 787 787 HOH HOH . J 6 HOH A 281 788 788 HOH HOH . J 6 HOH A 282 789 789 HOH HOH . J 6 HOH A 283 790 790 HOH HOH . J 6 HOH A 284 791 791 HOH HOH . J 6 HOH A 285 792 792 HOH HOH . J 6 HOH A 286 793 793 HOH HOH . J 6 HOH A 287 794 794 HOH HOH . J 6 HOH A 288 795 795 HOH HOH . J 6 HOH A 289 796 796 HOH HOH . J 6 HOH A 290 797 797 HOH HOH . J 6 HOH A 291 798 798 HOH HOH . J 6 HOH A 292 799 799 HOH HOH . J 6 HOH A 293 800 800 HOH HOH . J 6 HOH A 294 801 801 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol S _atom_site.label_atom_id S _atom_site.label_comp_id H2S _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 51.385 _atom_site.Cartn_y -15.857 _atom_site.Cartn_z 2.512 _atom_site.occupancy 0.69 _atom_site.B_iso_or_equiv 44.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id S _atom_site.auth_comp_id H2S _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #