data_3SY9 # _model_server_result.job_id 6UBtG-2jCt18Vq8U6RIU8Q _model_server_result.datetime_utc '2024-10-15 11:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":507}' # _entry.id 3SY9 # _exptl.entry_id 3SY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.67 _cell.angle_beta 62.57 _cell.angle_gamma 62.95 _cell.entry_id 3SY9 _cell.length_a 93.353 _cell.length_b 102.828 _cell.length_c 101.696 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Y 1 1 B,K,L,M,N,O,P,Q,Z 2 1 C,R,S,T,U,V,AA 3 1 D,W,X,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 Q N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3SY9 _atom_sites.fract_transf_matrix[1][1] 0.010712 _atom_sites.fract_transf_matrix[1][2] -0.00547 _atom_sites.fract_transf_matrix[1][3] -0.005532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010919 _atom_sites.fract_transf_matrix[2][3] -0.000056 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 C8E A 1 501 1 C8E C8E . F 2 C8E A 1 502 2 C8E C8E . G 2 C8E A 1 503 3 C8E C8E . H 2 C8E A 1 504 5 C8E C8E . I 2 C8E A 1 505 7 C8E C8E . J 3 BOG A 1 506 2 BOG BOG . K 2 C8E B 1 501 9 C8E C8E . L 2 C8E B 1 502 10 C8E C8E . M 2 C8E B 1 503 12 C8E C8E . N 2 C8E B 1 504 13 C8E C8E . O 2 C8E B 1 505 14 C8E C8E . P 2 C8E B 1 506 15 C8E C8E . Q 3 BOG B 1 507 1 BOG BOG . R 2 C8E C 1 501 4 C8E C8E . S 2 C8E C 1 502 6 C8E C8E . T 2 C8E C 1 503 17 C8E C8E . U 2 C8E C 1 504 18 C8E C8E . V 2 C8E C 1 505 19 C8E C8E . W 2 C8E D 1 501 20 C8E C8E . X 2 C8E D 1 502 22 C8E C8E . Y 4 HOH A 1 601 73 HOH HOH . Y 4 HOH A 2 602 74 HOH HOH . Y 4 HOH A 3 603 77 HOH HOH . Y 4 HOH A 4 604 79 HOH HOH . Y 4 HOH A 5 605 88 HOH HOH . Y 4 HOH A 6 606 90 HOH HOH . Y 4 HOH A 7 607 91 HOH HOH . Y 4 HOH A 8 608 95 HOH HOH . Y 4 HOH A 9 609 97 HOH HOH . Y 4 HOH A 10 610 3 HOH HOH . Y 4 HOH A 11 611 4 HOH HOH . Y 4 HOH A 12 612 11 HOH HOH . Y 4 HOH A 13 613 12 HOH HOH . Y 4 HOH A 14 614 13 HOH HOH . Y 4 HOH A 15 615 15 HOH HOH . Y 4 HOH A 16 616 21 HOH HOH . Y 4 HOH A 17 617 26 HOH HOH . Y 4 HOH A 18 618 29 HOH HOH . Y 4 HOH A 19 619 34 HOH HOH . Y 4 HOH A 20 620 36 HOH HOH . Y 4 HOH A 21 621 39 HOH HOH . Y 4 HOH A 22 622 42 HOH HOH . Y 4 HOH A 23 623 43 HOH HOH . Y 4 HOH A 24 624 45 HOH HOH . Y 4 HOH A 25 625 50 HOH HOH . Y 4 HOH A 26 626 51 HOH HOH . Y 4 HOH A 27 627 52 HOH HOH . Y 4 HOH A 28 628 55 HOH HOH . Y 4 HOH A 29 629 56 HOH HOH . Y 4 HOH A 30 630 58 HOH HOH . Y 4 HOH A 31 631 59 HOH HOH . Y 4 HOH A 32 632 64 HOH HOH . Y 4 HOH A 33 633 66 HOH HOH . Y 4 HOH A 34 634 69 HOH HOH . Y 4 HOH A 35 635 83 HOH HOH . Y 4 HOH A 36 636 86 HOH HOH . Y 4 HOH A 37 637 99 HOH HOH . Y 4 HOH A 38 638 100 HOH HOH . Y 4 HOH A 39 639 109 HOH HOH . Y 4 HOH A 40 640 110 HOH HOH . Y 4 HOH A 41 641 113 HOH HOH . Y 4 HOH A 42 642 115 HOH HOH . Z 4 HOH B 1 601 71 HOH HOH . Z 4 HOH B 2 602 78 HOH HOH . Z 4 HOH B 3 603 93 HOH HOH . Z 4 HOH B 4 604 94 HOH HOH . Z 4 HOH B 5 605 6 HOH HOH . Z 4 HOH B 6 606 7 HOH HOH . Z 4 HOH B 7 607 9 HOH HOH . Z 4 HOH B 8 608 16 HOH HOH . Z 4 HOH B 9 609 17 HOH HOH . Z 4 HOH B 10 610 19 HOH HOH . Z 4 HOH B 11 611 22 HOH HOH . Z 4 HOH B 12 612 23 HOH HOH . Z 4 HOH B 13 613 28 HOH HOH . Z 4 HOH B 14 614 40 HOH HOH . Z 4 HOH B 15 615 48 HOH HOH . Z 4 HOH B 16 616 49 HOH HOH . Z 4 HOH B 17 617 54 HOH HOH . Z 4 HOH B 18 618 61 HOH HOH . Z 4 HOH B 19 619 62 HOH HOH . Z 4 HOH B 20 620 65 HOH HOH . Z 4 HOH B 21 621 70 HOH HOH . Z 4 HOH B 22 622 80 HOH HOH . Z 4 HOH B 23 623 98 HOH HOH . Z 4 HOH B 24 624 101 HOH HOH . Z 4 HOH B 25 625 103 HOH HOH . Z 4 HOH B 26 626 106 HOH HOH . Z 4 HOH B 27 627 111 HOH HOH . Z 4 HOH B 28 628 112 HOH HOH . Z 4 HOH B 29 629 118 HOH HOH . Z 4 HOH B 30 630 123 HOH HOH . Z 4 HOH B 31 631 124 HOH HOH . Z 4 HOH B 32 632 125 HOH HOH . AA 4 HOH C 1 601 2 HOH HOH . AA 4 HOH C 2 602 5 HOH HOH . AA 4 HOH C 3 603 10 HOH HOH . AA 4 HOH C 4 604 14 HOH HOH . AA 4 HOH C 5 605 24 HOH HOH . AA 4 HOH C 6 606 25 HOH HOH . AA 4 HOH C 7 607 32 HOH HOH . AA 4 HOH C 8 608 33 HOH HOH . AA 4 HOH C 9 609 37 HOH HOH . AA 4 HOH C 10 610 38 HOH HOH . AA 4 HOH C 11 611 44 HOH HOH . AA 4 HOH C 12 612 53 HOH HOH . AA 4 HOH C 13 613 57 HOH HOH . AA 4 HOH C 14 614 60 HOH HOH . AA 4 HOH C 15 615 63 HOH HOH . AA 4 HOH C 16 616 67 HOH HOH . AA 4 HOH C 17 617 68 HOH HOH . AA 4 HOH C 18 618 72 HOH HOH . AA 4 HOH C 19 619 81 HOH HOH . AA 4 HOH C 20 620 82 HOH HOH . AA 4 HOH C 21 621 89 HOH HOH . AA 4 HOH C 22 622 96 HOH HOH . AA 4 HOH C 23 623 104 HOH HOH . AA 4 HOH C 24 624 105 HOH HOH . AA 4 HOH C 25 625 108 HOH HOH . AA 4 HOH C 26 626 114 HOH HOH . AA 4 HOH C 27 627 119 HOH HOH . AA 4 HOH C 28 628 121 HOH HOH . AA 4 HOH C 29 629 126 HOH HOH . AA 4 HOH C 30 630 127 HOH HOH . AA 4 HOH C 31 631 128 HOH HOH . AA 4 HOH C 32 632 129 HOH HOH . BA 4 HOH D 1 601 1 HOH HOH . BA 4 HOH D 2 602 8 HOH HOH . BA 4 HOH D 3 603 18 HOH HOH . BA 4 HOH D 4 604 20 HOH HOH . BA 4 HOH D 5 605 27 HOH HOH . BA 4 HOH D 6 606 31 HOH HOH . BA 4 HOH D 7 607 35 HOH HOH . BA 4 HOH D 8 608 41 HOH HOH . BA 4 HOH D 9 609 46 HOH HOH . BA 4 HOH D 10 610 47 HOH HOH . BA 4 HOH D 11 611 75 HOH HOH . BA 4 HOH D 12 612 84 HOH HOH . BA 4 HOH D 13 613 85 HOH HOH . BA 4 HOH D 14 614 87 HOH HOH . BA 4 HOH D 15 615 92 HOH HOH . BA 4 HOH D 16 616 102 HOH HOH . BA 4 HOH D 17 617 117 HOH HOH . BA 4 HOH D 18 618 120 HOH HOH . BA 4 HOH D 19 619 122 HOH HOH . BA 4 HOH D 20 620 130 HOH HOH . BA 4 HOH D 21 621 131 HOH HOH . BA 4 HOH D 22 622 132 HOH HOH . BA 4 HOH D 23 623 133 HOH HOH . BA 4 HOH D 24 624 134 HOH HOH . BA 4 HOH D 25 625 135 HOH HOH . BA 4 HOH D 26 626 136 HOH HOH . BA 4 HOH D 27 627 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . Q 3 29.738 -76.544 37.573 1 97.62 ? C1 BOG 507 B 1 HETATM 2 O O1 BOG . . . Q 3 31.123 -76.67 37.816 1 92.02 ? O1 BOG 507 B 1 HETATM 3 C C2 BOG . . . Q 3 29.412 -76.941 36.123 1 110.71 ? C2 BOG 507 B 1 HETATM 4 O O2 BOG . . . Q 3 29.117 -75.805 35.312 1 113.95 ? O2 BOG 507 B 1 HETATM 5 C C3 BOG . . . Q 3 28.301 -77.867 35.885 1 113.49 ? C3 BOG 507 B 1 HETATM 6 O O3 BOG . . . Q 3 27.83 -77.563 34.51 1 116.1 ? O3 BOG 507 B 1 HETATM 7 C C4 BOG . . . Q 3 27.231 -77.783 36.815 1 105.07 ? C4 BOG 507 B 1 HETATM 8 O O4 BOG . . . Q 3 26.33 -76.761 36.372 1 106.46 ? O4 BOG 507 B 1 HETATM 9 C C5 BOG . . . Q 3 27.585 -77.552 38.253 1 92.97 ? C5 BOG 507 B 1 HETATM 10 O O5 BOG . . . Q 3 28.98 -77.16 38.567 1 84.94 ? O5 BOG 507 B 1 HETATM 11 C C6 BOG . . . Q 3 26.651 -76.604 38.859 1 87.56 ? C6 BOG 507 B 1 HETATM 12 O O6 BOG . . . Q 3 25.957 -77.071 39.988 1 85.78 ? O6 BOG 507 B 1 HETATM 13 C C1' BOG . . . Q 3 31.716 -76.514 39.112 1 71.5 ? C1' BOG 507 B 1 HETATM 14 C C2' BOG . . . Q 3 32.75 -75.424 39.359 1 58.23 ? C2' BOG 507 B 1 HETATM 15 C C3' BOG . . . Q 3 34.225 -75.747 39.134 1 49.13 ? C3' BOG 507 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 15 #