data_3SYB # _model_server_result.job_id nmf4uz1eux9i0J7IpgwVOA _model_server_result.datetime_utc '2025-02-17 11:11:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3syb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":472}' # _entry.id 3SYB # _exptl.entry_id 3SYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SYB _cell.length_a 99.93 _cell.length_b 159.828 _cell.length_c 82.064 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 3SYB _atom_sites.fract_transf_matrix[1][1] 0.010007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 468 1 SO4 SO4 . C 2 SO4 A 1 469 2 SO4 SO4 . D 3 C8E A 1 470 1 C8E C8E . E 3 C8E A 1 471 2 C8E C8E . F 3 C8E A 1 472 3 C8E C8E . G 4 HOH A 1 473 1 HOH HOH . G 4 HOH A 2 474 2 HOH HOH . G 4 HOH A 3 475 3 HOH HOH . G 4 HOH A 4 476 4 HOH HOH . G 4 HOH A 5 477 5 HOH HOH . G 4 HOH A 6 478 6 HOH HOH . G 4 HOH A 7 479 7 HOH HOH . G 4 HOH A 8 480 8 HOH HOH . G 4 HOH A 9 481 9 HOH HOH . G 4 HOH A 10 482 10 HOH HOH . G 4 HOH A 11 483 11 HOH HOH . G 4 HOH A 12 484 12 HOH HOH . G 4 HOH A 13 485 13 HOH HOH . G 4 HOH A 14 486 14 HOH HOH . G 4 HOH A 15 487 15 HOH HOH . G 4 HOH A 16 488 16 HOH HOH . G 4 HOH A 17 489 17 HOH HOH . G 4 HOH A 18 490 18 HOH HOH . G 4 HOH A 19 491 19 HOH HOH . G 4 HOH A 20 492 20 HOH HOH . G 4 HOH A 21 493 21 HOH HOH . G 4 HOH A 22 494 22 HOH HOH . G 4 HOH A 23 495 23 HOH HOH . G 4 HOH A 24 496 24 HOH HOH . G 4 HOH A 25 497 25 HOH HOH . G 4 HOH A 26 498 26 HOH HOH . G 4 HOH A 27 499 27 HOH HOH . G 4 HOH A 28 500 28 HOH HOH . G 4 HOH A 29 501 29 HOH HOH . G 4 HOH A 30 502 30 HOH HOH . G 4 HOH A 31 503 31 HOH HOH . G 4 HOH A 32 504 32 HOH HOH . G 4 HOH A 33 505 33 HOH HOH . G 4 HOH A 34 506 34 HOH HOH . G 4 HOH A 35 507 35 HOH HOH . G 4 HOH A 36 508 36 HOH HOH . G 4 HOH A 37 509 37 HOH HOH . G 4 HOH A 38 510 38 HOH HOH . G 4 HOH A 39 511 39 HOH HOH . G 4 HOH A 40 512 40 HOH HOH . G 4 HOH A 41 513 41 HOH HOH . G 4 HOH A 42 514 42 HOH HOH . G 4 HOH A 43 515 43 HOH HOH . G 4 HOH A 44 516 44 HOH HOH . G 4 HOH A 45 517 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 C8E . . . F 3 31.672 41.067 -19.984 1 55 ? C5 C8E 472 A 1 HETATM 2 C C6 C8E . . . F 3 32.394 40.117 -20.942 1 55.65 ? C6 C8E 472 A 1 HETATM 3 C C7 C8E . . . F 3 31.802 38.715 -20.866 1 54.6 ? C7 C8E 472 A 1 HETATM 4 C C8 C8E . . . F 3 31.732 37.996 -22.209 1 58.94 ? C8 C8E 472 A 1 HETATM 5 O O9 C8E . . . F 3 31.043 36.758 -22.091 1 61.24 ? O9 C8E 472 A 1 HETATM 6 C C10 C8E . . . F 3 29.798 36.781 -22.758 1 57.85 ? C10 C8E 472 A 1 HETATM 7 C C11 C8E . . . F 3 28.91 35.61 -22.355 1 52.83 ? C11 C8E 472 A 1 HETATM 8 O O12 C8E . . . F 3 27.583 35.914 -22.756 1 63.83 ? O12 C8E 472 A 1 HETATM 9 C C13 C8E . . . F 3 26.656 34.907 -22.412 1 59.27 ? C13 C8E 472 A 1 HETATM 10 C C14 C8E . . . F 3 26.801 33.707 -23.348 1 63.69 ? C14 C8E 472 A 1 HETATM 11 O O15 C8E . . . F 3 25.648 32.89 -23.27 1 70.39 ? O15 C8E 472 A 1 HETATM 12 C C16 C8E . . . F 3 25.934 31.517 -23.044 1 66.68 ? C16 C8E 472 A 1 HETATM 13 C C17 C8E . . . F 3 26.049 30.732 -24.353 1 72.47 ? C17 C8E 472 A 1 HETATM 14 O O18 C8E . . . F 3 25.598 29.401 -24.17 1 70.67 ? O18 C8E 472 A 1 HETATM 15 C C19 C8E . . . F 3 24.329 29.346 -23.545 1 66.29 ? C19 C8E 472 A 1 HETATM 16 C C20 C8E . . . F 3 23.203 29.491 -24.571 1 69.21 ? C20 C8E 472 A 1 HETATM 17 O O21 C8E . . . F 3 22.307 28.401 -24.489 1 66.03 ? O21 C8E 472 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #