data_3SYI # _model_server_result.job_id VDroalA_4t7kNGEVTnb9fQ _model_server_result.datetime_utc '2024-11-23 06:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3syi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3SYI # _exptl.entry_id 3SYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SYI _cell.length_a 149.79 _cell.length_b 149.79 _cell.length_c 81.911 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -27.303667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id H2S _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id H2S _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.226 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 287 n n C1B O1B LMT sing 288 n n C1B O5B LMT sing 289 n n C1B H1B LMT sing 290 n n C2B C3B LMT sing 291 n n C2B O2B LMT sing 292 n n C2B H2B LMT sing 293 n n C3B C4B LMT sing 294 n n C3B O3B LMT sing 295 n n C3B H3B LMT sing 296 n n C4B C5B LMT sing 297 n n C4B O4' LMT sing 298 n n C4B H4B LMT sing 299 n n C5B C6B LMT sing 300 n n C5B O5B LMT sing 301 n n C5B H5B LMT sing 302 n n C6B O6B LMT sing 303 n n C6B "H6'2" LMT sing 304 n n C6B "H6'1" LMT sing 305 n n O1B C4' LMT sing 306 n n O2B H2O1 LMT sing 307 n n O3B H3O1 LMT sing 308 n n O4' H4O1 LMT sing 309 n n O6B H6B LMT sing 310 n n C1' C2' LMT sing 311 n n C1' O1' LMT sing 312 n n C1' O5' LMT sing 313 n n C1' H1' LMT sing 314 n n C2' C3' LMT sing 315 n n C2' O2' LMT sing 316 n n C2' H2' LMT sing 317 n n C3' C4' LMT sing 318 n n C3' O3' LMT sing 319 n n C3' H3' LMT sing 320 n n C4' C5' LMT sing 321 n n C4' H4' LMT sing 322 n n C5' C6' LMT sing 323 n n C5' O5' LMT sing 324 n n C5' H5' LMT sing 325 n n C6' O6' LMT sing 326 n n C6' H6D LMT sing 327 n n C6' H6E LMT sing 328 n n O1' C1 LMT sing 329 n n O2' H2O2 LMT sing 330 n n O3' H3O2 LMT sing 331 n n O6' H6' LMT sing 332 n n C1 C2 LMT sing 333 n n C1 H12 LMT sing 334 n n C1 H11 LMT sing 335 n n C2 C3 LMT sing 336 n n C2 H22 LMT sing 337 n n C2 H21 LMT sing 338 n n C3 C4 LMT sing 339 n n C3 H32 LMT sing 340 n n C3 H31 LMT sing 341 n n C4 C5 LMT sing 342 n n C4 H42 LMT sing 343 n n C4 H41 LMT sing 344 n n C5 C6 LMT sing 345 n n C5 H52 LMT sing 346 n n C5 H51 LMT sing 347 n n C6 C7 LMT sing 348 n n C6 H62 LMT sing 349 n n C6 H61 LMT sing 350 n n C7 C8 LMT sing 351 n n C7 H72 LMT sing 352 n n C7 H71 LMT sing 353 n n C8 C9 LMT sing 354 n n C8 H82 LMT sing 355 n n C8 H81 LMT sing 356 n n C9 C10 LMT sing 357 n n C9 H92 LMT sing 358 n n C9 H91 LMT sing 359 n n C10 C11 LMT sing 360 n n C10 H102 LMT sing 361 n n C10 H101 LMT sing 362 n n C11 C12 LMT sing 363 n n C11 H112 LMT sing 364 n n C11 H111 LMT sing 365 n n C12 H123 LMT sing 366 n n C12 H122 LMT sing 367 n n C12 H121 LMT sing 368 n n # _atom_sites.entry_id 3SYI _atom_sites.fract_transf_matrix[1][1] 0.006676 _atom_sites.fract_transf_matrix[1][2] 0.003854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 LMT A 1 501 501 LMT LMT . D 4 H2S A 1 502 502 H2S H2S . E 4 H2S A 1 503 503 H2S H2S . F 4 H2S A 1 504 504 H2S H2S . G 5 SO4 A 1 505 505 SO4 SO4 . H 4 H2S A 1 506 506 H2S H2S . I 4 H2S A 1 507 507 H2S H2S . J 6 HOH A 1 509 509 HOH HOH . J 6 HOH A 2 510 510 HOH HOH . J 6 HOH A 3 511 511 HOH HOH . J 6 HOH A 4 512 512 HOH HOH . J 6 HOH A 5 513 513 HOH HOH . J 6 HOH A 6 514 514 HOH HOH . J 6 HOH A 7 515 515 HOH HOH . J 6 HOH A 8 516 516 HOH HOH . J 6 HOH A 9 517 517 HOH HOH . J 6 HOH A 10 518 518 HOH HOH . J 6 HOH A 11 519 519 HOH HOH . J 6 HOH A 12 520 520 HOH HOH . J 6 HOH A 13 521 521 HOH HOH . J 6 HOH A 14 522 522 HOH HOH . J 6 HOH A 15 523 523 HOH HOH . J 6 HOH A 16 524 524 HOH HOH . J 6 HOH A 17 525 525 HOH HOH . J 6 HOH A 18 526 526 HOH HOH . J 6 HOH A 19 528 528 HOH HOH . J 6 HOH A 20 529 529 HOH HOH . J 6 HOH A 21 530 530 HOH HOH . J 6 HOH A 22 531 531 HOH HOH . J 6 HOH A 23 532 532 HOH HOH . J 6 HOH A 24 533 533 HOH HOH . J 6 HOH A 25 534 534 HOH HOH . J 6 HOH A 26 535 535 HOH HOH . J 6 HOH A 27 536 536 HOH HOH . J 6 HOH A 28 537 537 HOH HOH . J 6 HOH A 29 538 538 HOH HOH . J 6 HOH A 30 539 539 HOH HOH . J 6 HOH A 31 540 540 HOH HOH . J 6 HOH A 32 541 541 HOH HOH . J 6 HOH A 33 542 542 HOH HOH . J 6 HOH A 34 543 543 HOH HOH . J 6 HOH A 35 544 544 HOH HOH . J 6 HOH A 36 545 545 HOH HOH . J 6 HOH A 37 546 546 HOH HOH . J 6 HOH A 38 547 547 HOH HOH . J 6 HOH A 39 548 548 HOH HOH . J 6 HOH A 40 549 549 HOH HOH . J 6 HOH A 41 550 550 HOH HOH . J 6 HOH A 42 551 551 HOH HOH . J 6 HOH A 43 552 552 HOH HOH . J 6 HOH A 44 553 553 HOH HOH . J 6 HOH A 45 554 554 HOH HOH . J 6 HOH A 46 555 555 HOH HOH . J 6 HOH A 47 556 556 HOH HOH . J 6 HOH A 48 557 557 HOH HOH . J 6 HOH A 49 558 558 HOH HOH . J 6 HOH A 50 559 559 HOH HOH . J 6 HOH A 51 560 560 HOH HOH . J 6 HOH A 52 561 561 HOH HOH . J 6 HOH A 53 562 562 HOH HOH . J 6 HOH A 54 563 563 HOH HOH . J 6 HOH A 55 564 564 HOH HOH . J 6 HOH A 56 565 565 HOH HOH . J 6 HOH A 57 566 566 HOH HOH . J 6 HOH A 58 567 567 HOH HOH . J 6 HOH A 59 568 568 HOH HOH . J 6 HOH A 60 569 569 HOH HOH . J 6 HOH A 61 570 570 HOH HOH . J 6 HOH A 62 572 572 HOH HOH . J 6 HOH A 63 573 573 HOH HOH . J 6 HOH A 64 574 574 HOH HOH . J 6 HOH A 65 575 575 HOH HOH . J 6 HOH A 66 576 576 HOH HOH . J 6 HOH A 67 577 577 HOH HOH . J 6 HOH A 68 578 578 HOH HOH . J 6 HOH A 69 579 579 HOH HOH . J 6 HOH A 70 580 580 HOH HOH . J 6 HOH A 71 581 581 HOH HOH . J 6 HOH A 72 582 582 HOH HOH . J 6 HOH A 73 583 583 HOH HOH . J 6 HOH A 74 584 584 HOH HOH . J 6 HOH A 75 585 585 HOH HOH . J 6 HOH A 76 586 586 HOH HOH . J 6 HOH A 77 587 587 HOH HOH . J 6 HOH A 78 588 588 HOH HOH . J 6 HOH A 79 589 589 HOH HOH . J 6 HOH A 80 590 590 HOH HOH . J 6 HOH A 81 591 591 HOH HOH . J 6 HOH A 82 592 592 HOH HOH . J 6 HOH A 83 593 593 HOH HOH . J 6 HOH A 84 594 594 HOH HOH . J 6 HOH A 85 595 595 HOH HOH . J 6 HOH A 86 596 596 HOH HOH . J 6 HOH A 87 597 597 HOH HOH . J 6 HOH A 88 598 598 HOH HOH . J 6 HOH A 89 599 599 HOH HOH . J 6 HOH A 90 600 600 HOH HOH . J 6 HOH A 91 601 601 HOH HOH . J 6 HOH A 92 602 602 HOH HOH . J 6 HOH A 93 603 603 HOH HOH . J 6 HOH A 94 604 604 HOH HOH . J 6 HOH A 95 605 605 HOH HOH . J 6 HOH A 96 606 606 HOH HOH . J 6 HOH A 97 607 607 HOH HOH . J 6 HOH A 98 608 608 HOH HOH . J 6 HOH A 99 609 609 HOH HOH . J 6 HOH A 100 610 610 HOH HOH . J 6 HOH A 101 611 611 HOH HOH . J 6 HOH A 102 612 612 HOH HOH . J 6 HOH A 103 613 613 HOH HOH . J 6 HOH A 104 614 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . C 3 62.361 1.298 6.185 1 53.57 ? C1B LMT 501 A 1 HETATM 2 C C2B LMT . . . C 3 62.808 2.532 6.915 1 57.7 ? C2B LMT 501 A 1 HETATM 3 C C3B LMT . . . C 3 61.817 2.972 7.871 1 61.6 ? C3B LMT 501 A 1 HETATM 4 C C4B LMT . . . C 3 60.466 3.014 7.347 1 53.36 ? C4B LMT 501 A 1 HETATM 5 C C5B LMT . . . C 3 60.114 1.78 6.529 1 49.25 ? C5B LMT 501 A 1 HETATM 6 C C6B LMT . . . C 3 58.737 1.954 5.939 1 51.58 ? C6B LMT 501 A 1 HETATM 7 O O1B LMT . . . C 3 62.268 0.263 7.087 1 57.86 ? O1B LMT 501 A 1 HETATM 8 O O2B LMT . . . C 3 64.033 2.213 7.589 1 50.26 ? O2B LMT 501 A 1 HETATM 9 O O3B LMT . . . C 3 62.138 4.312 8.358 1 62.21 ? O3B LMT 501 A 1 HETATM 10 O O4' LMT . . . C 3 59.546 3.164 8.414 1 53.83 ? O4' LMT 501 A 1 HETATM 11 O O5B LMT . . . C 3 61.053 1.502 5.532 1 44.58 ? O5B LMT 501 A 1 HETATM 12 O O6B LMT . . . C 3 58.234 0.924 5.148 1 62.45 ? O6B LMT 501 A 1 HETATM 13 C C1' LMT . . . C 3 63.14 -3.72 7.488 1 52.19 ? C1' LMT 501 A 1 HETATM 14 C C2' LMT . . . C 3 64.175 -2.745 7.96 1 59.04 ? C2' LMT 501 A 1 HETATM 15 C C3' LMT . . . C 3 63.618 -1.385 8.087 1 56.52 ? C3' LMT 501 A 1 HETATM 16 C C4' LMT . . . C 3 63.091 -0.874 6.828 1 55.64 ? C4' LMT 501 A 1 HETATM 17 C C5' LMT . . . C 3 62.286 -1.866 6.072 1 53.02 ? C5' LMT 501 A 1 HETATM 18 C C6' LMT . . . C 3 62.571 -1.589 4.688 1 52.6 ? C6' LMT 501 A 1 HETATM 19 O O1' LMT . . . C 3 63.725 -4.957 7.309 1 52.92 ? O1' LMT 501 A 1 HETATM 20 O O2' LMT . . . C 3 64.64 -3.185 9.207 1 61.83 ? O2' LMT 501 A 1 HETATM 21 O O3' LMT . . . C 3 64.672 -0.508 8.509 1 57.6 ? O3' LMT 501 A 1 HETATM 22 O O5' LMT . . . C 3 62.611 -3.337 6.238 1 51.34 ? O5' LMT 501 A 1 HETATM 23 O O6' LMT . . . C 3 61.531 -1.702 3.834 1 58.58 ? O6' LMT 501 A 1 HETATM 24 C C1 LMT . . . C 3 63.076 -6.114 7.822 1 52.81 ? C1 LMT 501 A 1 HETATM 25 C C2 LMT . . . C 3 61.911 -6.694 7.011 1 52.38 ? C2 LMT 501 A 1 HETATM 26 C C3 LMT . . . C 3 61.532 -8.122 7.334 1 56.59 ? C3 LMT 501 A 1 HETATM 27 C C4 LMT . . . C 3 60.09 -8.587 7.086 1 55.23 ? C4 LMT 501 A 1 HETATM 28 C C5 LMT . . . C 3 59.783 -10.063 7.457 1 57.74 ? C5 LMT 501 A 1 HETATM 29 C C6 LMT . . . C 3 58.8 -10.843 6.574 1 53.5 ? C6 LMT 501 A 1 HETATM 30 C C7 LMT . . . C 3 57.341 -10.845 6.999 1 50.02 ? C7 LMT 501 A 1 HETATM 31 C C8 LMT . . . C 3 56.361 -11.783 6.315 1 45.26 ? C8 LMT 501 A 1 HETATM 32 C C9 LMT . . . C 3 56.295 -11.784 4.811 1 43.01 ? C9 LMT 501 A 1 HETATM 33 C C10 LMT . . . C 3 55.245 -10.891 4.153 1 44.35 ? C10 LMT 501 A 1 HETATM 34 C C11 LMT . . . C 3 53.816 -11.135 4.504 1 50.39 ? C11 LMT 501 A 1 HETATM 35 C C12 LMT . . . C 3 53.149 -10.124 5.363 1 44.85 ? C12 LMT 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #