data_3SYI # _model_server_result.job_id Otl-SBeOhz8SYwQ4LwXFWA _model_server_result.datetime_utc '2024-11-26 23:01:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3syi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3SYI # _exptl.entry_id 3SYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 34.081 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROSULFURIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SYI _cell.length_a 149.79 _cell.length_b 149.79 _cell.length_c 81.911 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -27.303667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id H2S _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id H2S _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.226 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'H2 S' _chem_comp.formula_weight 34.081 _chem_comp.id H2S _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROSULFURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROGEN SULFIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S HS1 H2S sing 220 n n S HS2 H2S sing 221 n n # _atom_sites.entry_id 3SYI _atom_sites.fract_transf_matrix[1][1] 0.006676 _atom_sites.fract_transf_matrix[1][2] 0.003854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 LMT A 1 501 501 LMT LMT . D 4 H2S A 1 502 502 H2S H2S . E 4 H2S A 1 503 503 H2S H2S . F 4 H2S A 1 504 504 H2S H2S . G 5 SO4 A 1 505 505 SO4 SO4 . H 4 H2S A 1 506 506 H2S H2S . I 4 H2S A 1 507 507 H2S H2S . J 6 HOH A 1 509 509 HOH HOH . J 6 HOH A 2 510 510 HOH HOH . J 6 HOH A 3 511 511 HOH HOH . J 6 HOH A 4 512 512 HOH HOH . J 6 HOH A 5 513 513 HOH HOH . J 6 HOH A 6 514 514 HOH HOH . J 6 HOH A 7 515 515 HOH HOH . J 6 HOH A 8 516 516 HOH HOH . J 6 HOH A 9 517 517 HOH HOH . J 6 HOH A 10 518 518 HOH HOH . J 6 HOH A 11 519 519 HOH HOH . J 6 HOH A 12 520 520 HOH HOH . J 6 HOH A 13 521 521 HOH HOH . J 6 HOH A 14 522 522 HOH HOH . J 6 HOH A 15 523 523 HOH HOH . J 6 HOH A 16 524 524 HOH HOH . J 6 HOH A 17 525 525 HOH HOH . J 6 HOH A 18 526 526 HOH HOH . J 6 HOH A 19 528 528 HOH HOH . J 6 HOH A 20 529 529 HOH HOH . J 6 HOH A 21 530 530 HOH HOH . J 6 HOH A 22 531 531 HOH HOH . J 6 HOH A 23 532 532 HOH HOH . J 6 HOH A 24 533 533 HOH HOH . J 6 HOH A 25 534 534 HOH HOH . J 6 HOH A 26 535 535 HOH HOH . J 6 HOH A 27 536 536 HOH HOH . J 6 HOH A 28 537 537 HOH HOH . J 6 HOH A 29 538 538 HOH HOH . J 6 HOH A 30 539 539 HOH HOH . J 6 HOH A 31 540 540 HOH HOH . J 6 HOH A 32 541 541 HOH HOH . J 6 HOH A 33 542 542 HOH HOH . J 6 HOH A 34 543 543 HOH HOH . J 6 HOH A 35 544 544 HOH HOH . J 6 HOH A 36 545 545 HOH HOH . J 6 HOH A 37 546 546 HOH HOH . J 6 HOH A 38 547 547 HOH HOH . J 6 HOH A 39 548 548 HOH HOH . J 6 HOH A 40 549 549 HOH HOH . J 6 HOH A 41 550 550 HOH HOH . J 6 HOH A 42 551 551 HOH HOH . J 6 HOH A 43 552 552 HOH HOH . J 6 HOH A 44 553 553 HOH HOH . J 6 HOH A 45 554 554 HOH HOH . J 6 HOH A 46 555 555 HOH HOH . J 6 HOH A 47 556 556 HOH HOH . J 6 HOH A 48 557 557 HOH HOH . J 6 HOH A 49 558 558 HOH HOH . J 6 HOH A 50 559 559 HOH HOH . J 6 HOH A 51 560 560 HOH HOH . J 6 HOH A 52 561 561 HOH HOH . J 6 HOH A 53 562 562 HOH HOH . J 6 HOH A 54 563 563 HOH HOH . J 6 HOH A 55 564 564 HOH HOH . J 6 HOH A 56 565 565 HOH HOH . J 6 HOH A 57 566 566 HOH HOH . J 6 HOH A 58 567 567 HOH HOH . J 6 HOH A 59 568 568 HOH HOH . J 6 HOH A 60 569 569 HOH HOH . J 6 HOH A 61 570 570 HOH HOH . J 6 HOH A 62 572 572 HOH HOH . J 6 HOH A 63 573 573 HOH HOH . J 6 HOH A 64 574 574 HOH HOH . J 6 HOH A 65 575 575 HOH HOH . J 6 HOH A 66 576 576 HOH HOH . J 6 HOH A 67 577 577 HOH HOH . J 6 HOH A 68 578 578 HOH HOH . J 6 HOH A 69 579 579 HOH HOH . J 6 HOH A 70 580 580 HOH HOH . J 6 HOH A 71 581 581 HOH HOH . J 6 HOH A 72 582 582 HOH HOH . J 6 HOH A 73 583 583 HOH HOH . J 6 HOH A 74 584 584 HOH HOH . J 6 HOH A 75 585 585 HOH HOH . J 6 HOH A 76 586 586 HOH HOH . J 6 HOH A 77 587 587 HOH HOH . J 6 HOH A 78 588 588 HOH HOH . J 6 HOH A 79 589 589 HOH HOH . J 6 HOH A 80 590 590 HOH HOH . J 6 HOH A 81 591 591 HOH HOH . J 6 HOH A 82 592 592 HOH HOH . J 6 HOH A 83 593 593 HOH HOH . J 6 HOH A 84 594 594 HOH HOH . J 6 HOH A 85 595 595 HOH HOH . J 6 HOH A 86 596 596 HOH HOH . J 6 HOH A 87 597 597 HOH HOH . J 6 HOH A 88 598 598 HOH HOH . J 6 HOH A 89 599 599 HOH HOH . J 6 HOH A 90 600 600 HOH HOH . J 6 HOH A 91 601 601 HOH HOH . J 6 HOH A 92 602 602 HOH HOH . J 6 HOH A 93 603 603 HOH HOH . J 6 HOH A 94 604 604 HOH HOH . J 6 HOH A 95 605 605 HOH HOH . J 6 HOH A 96 606 606 HOH HOH . J 6 HOH A 97 607 607 HOH HOH . J 6 HOH A 98 608 608 HOH HOH . J 6 HOH A 99 609 609 HOH HOH . J 6 HOH A 100 610 610 HOH HOH . J 6 HOH A 101 611 611 HOH HOH . J 6 HOH A 102 612 612 HOH HOH . J 6 HOH A 103 613 613 HOH HOH . J 6 HOH A 104 614 614 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol S _atom_site.label_atom_id S _atom_site.label_comp_id H2S _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 50.829 _atom_site.Cartn_y -27.731 _atom_site.Cartn_z 11.205 _atom_site.occupancy 0.41 _atom_site.B_iso_or_equiv 41.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id S _atom_site.auth_comp_id H2S _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #